
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/226958/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/OV/1971866/1.GDAC_clinicalDataPicker.Finished/OV.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=OV", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"    "-oT=OV"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=580, in cluster file=562, common to both=554
[1]  80 554
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              103               451 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              103               451 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              154               400 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              154               400 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              124               430 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              124               430 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               98               456 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               98               456 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
              107               447 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
              107               447 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              204               350 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              204               350 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               30               524 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               30               524 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               17               537 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               17               537 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              139               415 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              139               415 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               31               523 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               31               523 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              121               433 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              121               433 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               61               493 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               61               493 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              121               433 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              121               433 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              144               410 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              144               410 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               86               468 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               86               468 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              203               351 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              203               351 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               59               495 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               59               495 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               26               528 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               26               528 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               133                421 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               133                421 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                69                485 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                69                485 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                40                514 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                40                514 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                60                494 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                60                494 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               201                353 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               201                353 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               116                438 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               116                438 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                38                516 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                38                516 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                33                521 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                33                521 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                24                530 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                24                530 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                32                522 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                32                522 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                16                538 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                16                538 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                10                544 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                10                544 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                23                531 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                23                531 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                75                479 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                75                479 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                41                513 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                41                513 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                97                457 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                97                457 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                90                464 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                90                464 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               229                325 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               229                325 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               266                288 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               266                288 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                68                486 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                68                486 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                545 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                545 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               33               521 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               33               521 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               34               520 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               34               520 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               22               532 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               22               532 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               26               528 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               26               528 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               524 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               524 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               58               496 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               58               496 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               23               531 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               23               531 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              251               303 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              251               303 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              292               262 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              292               262 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               82               472 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               82               472 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              167               387 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              167               387 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              120               434 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              120               434 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              188               366 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              188               366 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               90               464 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               90               464 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               49               505 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               49               505 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              226               328 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              226               328 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               60               494 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               60               494 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              208               346 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              208               346 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              236               318 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              236               318 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                61                493 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                61                493 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                86                468 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                86                468 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               140                414 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               140                414 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               107                447 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               107                447 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                49                505 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                49                505 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                72                482 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                72                482 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               251                303 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               251                303 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               160                394 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               160                394 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               213                341 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               213                341 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               258                296 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               258                296 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               346                208 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               346                208 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               416                138 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               416                138 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               320                234 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               320                234 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               179                375 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               179                375 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               225                329 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               225                329 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               138                416 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               138                416 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               138                416 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               138                416 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                35                519 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                35                519 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                21                533 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                21                533 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               145                409 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               145                409 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               376                178 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               376                178 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              100               454 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              100               454 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                                      
 [2] "DAYSTODEATH"                                       
 [3] "DAYSTOLASTFOLLOWUP"                                
 [4] "VITALSTATUS"                                       
 [5] "DCCUPLOADDATE"                                     
 [6] "PRIMARYSITEOFDESEASE"                              
 [7] "GENDER"                                            
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"                  
 [9] "RADIATIONTHERAPY"                                  
[10] "KARNOFSKYPERFORMANCESCORE"                         
[11] "EXAMINATIONS.EXAMINATION.KARNOFSKYPERFORMANCESCORE"
[12] "HISTOLOGICALTYPE"                                  
[13] "TUMORGRADE"                                        
[14] "TUMORSTAGE"                                        
[15] "PATIENTTUMORRECURRENCESTATUS"                      
[16] "DAYSTOTUMORRECURRENCE"                             
[17] "CHEMOTHERAPY"                                      
[18] "RADIATIONS.RADIATION.REGIMENINDICATION"            
[19] "NEOADJUVANTTHERAPY"                                
[20] "BATCHNUMBER"                                       

Input Data has 20 rows and 554 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
        1224         1247           55         1495           61         1418 
TCGA-04-1341 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 
          NA          563          361         1992         1918         1483 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1357 TCGA-04-1360 
         656         1946         1991         1499           NA           NA 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
         989         1348         1024         2328         2174         2505 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1519 TCGA-04-1525 TCGA-04-1530 
        1720         1265          608           NA         1167         3622 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
         884         2561         1685         1487          848          871 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
        1966         1102          969         1451         1379          887 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
         288         1756          546         1081          303         1169 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
        2717         2278         1265         1751         1882         1684 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
         927          547          178           92          260         2967 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
         187          186         1069          137         3418         2163 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
        1919         1209          636          819          379         1652 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
         788         2478          562         1011          982          356 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
         118         1077         1089          460          604          189 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
         748         1355         1204           83          377          945 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
         462          541         1678           75          340          346 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
         351         1036          981          944          651          256 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
        1184         1117          873          923          595          265 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
         237          247          252          249         1333         1073 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
        1073          414         2096         3260         2780         2259 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
        2027         2141         1880         2068         2099         1319 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
        1748         1708         1736          589         1441         1470 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
        1455         1367         1364         1128          842         1036 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
         912          643          453          420          141          195 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
         185          331          201          224          184          180 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
         208          143          128          162         1661         2648 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
        1877          894         2982          629          681         2154 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
        2521         1595         2237         1161         1497          129 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
        1652         1144         1167          425          999          504 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
         128          134          145          126           78          118 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
          94          433          372          261          328          266 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
         191          701          789          797         2196          836 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
         772          580          507           89           81         1446 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
        1293         1233          468          816          965         1503 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
         268          885          574           68         1562         1658 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
          98          949         2089          139         1013         2616 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
        3953          130          194         1189         1018         1768 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
          16          759         3525         2661         2788         2342 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
        1516           84          143          137          232          597 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
         354          663         1264          233          679         1645 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
        1933         1442          192          194          238          243 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
         239           23          190          183          181          163 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
         146          528          862          583          568         1324 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
         260         2218          379         1373         3224          277 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
         104           36          675          820         1745         1955 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
         493         1721         1249         1579         1259         1767 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
        2692         2148         1213          594         1341         1384 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
        1451          787          312          524         2742         2687 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
        1470         1163          253          106          113          116 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
         133          343          175          167          298          689 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
         919          499          336         2467          148         4623 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
        1364         1769         1059         3336          439         1641 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
         562          857         1947         1353         1736         1100 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
          24           11         1446          962         2143         1356 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
          25         2049         1102          506         1007         1699 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
        1620           31          819          973         1553         1126 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
          31         1064         1977         1124         1033           91 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
         365           90          565          548          480           11 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
         626          239            9         1732         1843         1081 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
        1558          454          760          549         2587          396 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
        1492           31         1157           92          365         1369 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
         608         1278           90          882          942          820 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
        2399         1360         1435         3095         1172           24 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
        1025          948         2077           16          514          567 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
        1815          555         1276          889         1053          517 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
        2606         2031         1914         1189          950          699 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
         741          685          526          376          360          374 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
         454          254          219          163         1053         2621 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
        1977         1900         1372          148         1285          360 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
         349          297         1158         1579         1103           75 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
         477            8         1462         1366         1058          185 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
        1114           36         1751          738          914         1484 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
        1386          918          571          683          204         1293 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
        1341           66          874          884          655          695 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
         686          260          914          783          847          737 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2533 TCGA-36-2534 
         751         1066         1004          897           NA          906 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
         788          763          724          657           68          638 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
         557          624          431          184          491          349 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
         435          276          287          230          227          232 
TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
          NA          731          346          643           53          679 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
         881          762          761         5480         2437          679 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
        3532          286         1046           65          164         1362 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
         338          245          637          955          564          848 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
         132          966          866         1484         1364         1089 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
          74         1024         1329           43          256          176 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
         347          396          276         1038          952         1126 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
        1292         1488         1721         2060         1321          479 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
        1161           60          168          441          547          121 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
         931         1212          932           36         1398         1381 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
         146          145         1573         2182         1875         1776 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
        1844         1992         1688          197         2337          629 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
        1354         3824          676         1579          483          193 
TCGA-61-2613 TCGA-61-2614 
         945          261 
Variable 1:'AGE':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=263,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=471,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'RADIATION.THERAPY':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'EXAMINATIONS.EXAMINATION.KARNOFSKYPERFORMANCESCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'TUMOR.GRADE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'PATIENTTUMORRECURRENCESTATUS':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'DAYSTOTUMORRECURRENCE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'CHEMOTHERAPY':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "PRIMARY.SITE.OF.DISEASE"               
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "TUMOR.STAGE"                           
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[6] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE" "4"           
[1] "stage2"
vv
  1   2   3   4 
 16  26 425  82 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 554 columns, 1 survival variables, and 6 non-survival variables.
AGE, nv=55, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=3, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=4, binary=FALSE, numeric=TRUE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 16  26 425  82 
[1] "table(vv)"
vv
  I  II III  IV 
 16  26 425  82 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 16  26 425  82 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 16  26 425  82 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    43  59
  1P GAIN WILD-TYPE 220 226
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              102               446 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               59               226 
$`1P GAIN MUTATED`
TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1364 TCGA-04-1525 TCGA-04-1649 
       18.51        65.49        63.06        33.67        38.37        64.64 
TCGA-04-1655 TCGA-09-0365 TCGA-09-0366 TCGA-09-1670 TCGA-09-2045 TCGA-09-2048 
       45.34         9.47        57.73        17.98        35.15         4.50 
TCGA-09-2049 TCGA-09-2051 TCGA-09-2056 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 
      112.37        63.09        12.46        24.59        39.58         2.73 
TCGA-13-0726 TCGA-13-0751 TCGA-13-0760 TCGA-13-0888 TCGA-13-0893 TCGA-13-0911 
       31.07        55.17        11.54        70.39        43.36        27.68 
TCGA-13-1410 TCGA-13-1496 TCGA-13-1506 TCGA-13-1512 TCGA-13-2061 TCGA-20-0987 
        4.70         4.24         4.41         3.09        10.78        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-23-1031 TCGA-23-1117 TCGA-23-1124 TCGA-23-1809 
       25.94        26.20        18.87        33.30        58.13         0.53 
TCGA-23-2077 TCGA-23-2084 TCGA-24-1104 TCGA-24-1417 TCGA-24-1431 TCGA-24-1436 
      115.89        49.84        63.55         7.82        19.17         8.55 
TCGA-24-1466 TCGA-24-1471 TCGA-24-1474 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       45.14         1.18        22.19        39.88        19.53        44.09 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1842 TCGA-24-1845 TCGA-24-1924 TCGA-24-1930 
       25.87        10.26         8.32         3.81        30.21        81.11 
TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2038 TCGA-24-2271 TCGA-24-2290 
       34.82        14.43        53.95        44.48        31.63        36.23 
TCGA-25-1312 TCGA-25-1329 TCGA-25-1627 TCGA-25-1633 TCGA-25-2392 TCGA-29-1698 
        1.02         2.96         0.36        60.59         1.02        68.28 
TCGA-29-1701 TCGA-29-1764 TCGA-29-1769 TCGA-29-1770 TCGA-29-1775 TCGA-29-1784 
       16.90        62.93        22.98        24.36        12.36         5.36 
TCGA-29-2425 TCGA-29-2432 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 
       65.00        11.84        38.07        51.91         2.47        15.68 
TCGA-30-1862 TCGA-30-1867 TCGA-31-1959 TCGA-36-1577 TCGA-36-2529 TCGA-36-2551 
        6.08         1.18         2.17        25.74        35.05        16.14 
TCGA-57-1582 TCGA-59-2351 TCGA-59-2355 TCGA-61-1730 TCGA-61-1733 TCGA-61-1740 
       24.03       116.12         2.14         4.34        31.76         2.43 
TCGA-61-1899 TCGA-61-1911 TCGA-61-2008 TCGA-61-2009 TCGA-61-2088 TCGA-61-2092 
        8.42        42.48        30.61        39.85         4.77        51.72 
TCGA-61-2097 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2111 TCGA-61-2614 
       60.62         6.48        76.83        20.68       125.72         8.58 

$`1P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       11.87        48.76        21.57        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       32.52        44.32        76.54        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 
       41.59        19.99       119.08        29.06        84.20        55.40 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       48.89        27.88        28.64        36.23        31.86        47.70 
TCGA-09-0364 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       29.16        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 TCGA-10-0926 
       71.11        39.75        20.91        26.93        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 
       35.41        35.80        15.12        19.86         6.21        44.55 
TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       12.39        15.19        17.79         2.47        11.18        11.38 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       61.81        67.99        69.01        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       37.08        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        6.05         5.92         6.84         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       70.82        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 
        4.21         4.77         4.14         2.56         3.88        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0996 TCGA-20-1682 
       12.23         8.58         8.75         6.28        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       25.38        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
        8.81        29.10         2.24        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       31.20        68.68         4.57        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 
        6.38        39.09        33.47        24.95        87.48        91.66 
TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       77.00         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
       47.41         6.31         6.38         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 
       28.34        18.67        43.53        72.92        12.46       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
        9.11         3.42        26.96        57.37        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       56.58        41.06        51.91        41.39        58.09        88.50 
TCGA-24-1556 TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       70.62        45.50        47.70        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 
       48.33        38.24         3.48         3.72         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 
        5.75         5.49         9.80        22.65        16.41        11.05 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2033 
        4.87       151.99        44.84        58.16       109.68        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       28.18        64.01        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2293 
       47.54        70.45        44.58         0.82        67.36        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       33.11        55.86        53.26        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 
        2.99        12.00        18.58        18.02        15.78        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        7.86         0.30        56.94        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 
       24.99        18.05        85.05        13.02        49.05        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 
      101.75        38.53         0.79        33.70        31.17         0.53 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       18.64        59.67        18.25        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 TCGA-29-1771 
       17.00        85.68        66.77        39.09        31.23        22.52 
TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       17.29        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
       34.62        86.17        62.47        45.11         4.87        42.25 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1853 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       11.47         9.76        36.26         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       34.78        36.62        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 
       44.09        28.73        29.06        21.53        22.85        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 
        8.55        30.05        27.85        24.23        24.69        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
        2.24        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       11.47        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
        7.63        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 
       25.05        25.02       180.16        80.12        22.32         9.40 
TCGA-59-2354 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
       34.39         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       31.40        18.54        27.88        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 
       35.80        33.67        43.69         1.41         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 
       13.02         9.07        34.13        31.30        37.02        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2012 TCGA-61-2016 
        5.52        14.50        17.98         3.98        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
       45.96        45.40         4.80        71.74        61.64        58.39 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2110 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       65.49        55.50        44.52        22.22        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 
        6.35        31.07 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.36              0.26 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           125.72            180.16 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           25.165            28.845 
[1] "0.4 - 125.7 (25.2)" "0.3 - 180.2 (28.8)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
[1] "hr=" "1.2"
D1V2, continuous
D1V3, multiclass
                    clus
vv                   1P GAIN MUTATED 1P GAIN WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          101               449
  PERITONEUM (OVARY)               1                 1
D1V4, continuous
D1V5, multiclass
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  I                 1                15
  II                7                19
  III              76               349
  IV               19                63
D1V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      2  101
  1P GAIN WILD-TYPE    1  450
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                2                 1
  YES             101               450
D1V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     83   20
  1P GAIN WILD-TYPE  367   84
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO               83               367
  YES              20                84

Clustering(2) Variable = 1q gain mutation analysis
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED    68  85
  1Q GAIN WILD-TYPE 195 200
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              153               395 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               85               200 
$`1Q GAIN MUTATED`
TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1356 TCGA-04-1364 TCGA-04-1516 
       18.51        65.49        63.06        49.28        33.67        41.59 
TCGA-04-1525 TCGA-04-1542 TCGA-04-1649 TCGA-04-1655 TCGA-09-0365 TCGA-09-0366 
       38.37        84.20        64.64        45.34         9.47        57.73 
TCGA-09-1661 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 TCGA-09-1674 TCGA-09-2045 
       38.43        55.36        17.98         5.85         8.55        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-09-2056 TCGA-10-0933 TCGA-10-0935 
        4.50       112.37        63.09        12.46        11.70        35.41 
TCGA-10-0938 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 TCGA-13-0727 TCGA-13-0751 
       19.86        24.59        39.58         2.73        15.19        55.17 
TCGA-13-0760 TCGA-13-0762 TCGA-13-0795 TCGA-13-0799 TCGA-13-0800 TCGA-13-0888 
       11.54        32.25        19.56         7.79         8.12        70.39 
TCGA-13-0901 TCGA-13-0911 TCGA-13-0921 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
       19.36        27.68         4.64         5.92         6.84         4.70 
TCGA-13-1481 TCGA-13-1484 TCGA-13-1495 TCGA-13-1506 TCGA-13-1512 TCGA-20-0987 
       87.06        98.04        49.22         4.41         3.09        23.05 
TCGA-20-0991 TCGA-20-1683 TCGA-20-1684 TCGA-23-1031 TCGA-23-1114 TCGA-23-1124 
       26.20        25.38        19.07        18.87        68.68        58.13 
TCGA-23-1809 TCGA-23-2077 TCGA-24-1104 TCGA-24-1413 TCGA-24-1422 TCGA-24-1423 
        0.53       115.89        63.55         6.31         0.76         6.25 
TCGA-24-1431 TCGA-24-1436 TCGA-24-1466 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
       19.17         8.55        45.14         1.18        22.19        26.96 
TCGA-24-1553 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1564 TCGA-24-1565 
       58.09        39.88        19.53        44.09        25.87        10.26 
TCGA-24-1604 TCGA-24-1842 TCGA-24-1845 TCGA-24-1924 TCGA-24-1930 TCGA-24-2026 
       88.34         8.32         3.81        30.21        81.11        34.82 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2038 TCGA-24-2271 TCGA-24-2290 TCGA-25-1312 
       14.43        53.95        44.48        31.63        36.23         1.02 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1329 TCGA-25-1627 TCGA-25-1633 TCGA-25-1634 TCGA-25-1871 TCGA-25-2392 
        2.96         0.36        60.59        35.54        24.99         1.02 
TCGA-25-2396 TCGA-29-1688 TCGA-29-1690 TCGA-29-1695 TCGA-29-1698 TCGA-29-1701 
        3.02        78.87        44.71         0.79        68.28        16.90 
TCGA-29-1702 TCGA-29-1710 TCGA-29-1711 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 
       18.64        29.23        34.62        62.93        39.09        22.98 
TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1784 TCGA-29-2425 TCGA-29-2432 
       24.36        17.29        12.36         5.36        65.00        11.84 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1862 
       11.47        38.07        51.91         2.47        15.68         6.08 
TCGA-30-1867 TCGA-31-1959 TCGA-36-1569 TCGA-36-1571 TCGA-36-1581 TCGA-36-2529 
        1.18         2.17        29.06        22.85        24.69        35.05 
TCGA-36-2551 TCGA-36-2552 TCGA-57-1582 TCGA-57-1586 TCGA-59-2351 TCGA-59-2355 
       16.14        11.47        24.03        22.32       116.12         2.14 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1740 TCGA-61-1743 TCGA-61-1899 
        4.34        31.76        28.47         2.43        43.69         8.42 
TCGA-61-1904 TCGA-61-1911 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2088 
        9.07        42.48         3.98        30.61        39.85         4.77 
TCGA-61-2092 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       51.72        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2111 TCGA-61-2614 
       20.68       125.72         8.58 

$`1Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1361 
       11.87        48.76        21.57        63.98        65.46        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 
       44.32        76.54        71.47        82.36        56.55        19.99 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
      119.08        29.06        55.40        48.89        27.88        28.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0367 TCGA-09-0369 
       36.23        31.86        47.70        29.16        17.95        35.54 
TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
        9.96        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1669 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2050 
       30.48         3.02        97.55         6.15         6.12        71.11 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       39.75        20.91        26.93        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 
       18.48        33.24        32.28         3.88        35.80        15.12 
TCGA-13-0714 TCGA-13-0720 TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0755 
        6.21        44.55        12.39        31.07        17.79         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.18        11.38        34.06        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0801 
       38.93        36.72        28.70        30.35         8.71         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 
      107.18        91.40        74.27        66.64        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 
       69.01        43.36        57.47        56.15        57.07        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0912 
       48.33        47.84        44.94        44.84        37.08        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 
       29.98        21.14        14.89        13.81         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1411 TCGA-13-1412 
       10.88         6.61         7.36         6.05         4.21         5.33 
TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       54.61        61.71        29.39        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        73.55        38.17         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 TCGA-13-2059 
        4.77         4.14         2.56         3.88        14.24        12.23 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 TCGA-20-0996 
        8.58        10.78         8.75         6.28        25.94        72.20 
TCGA-20-1682 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       27.48        16.67         2.93         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       29.10         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       39.09        33.47        24.95        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1105 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1424 
       47.41         6.38         7.82         7.99         7.86         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1434 
        5.95         5.36         4.80        17.36        28.34        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       43.53        72.92        12.46       105.99         9.11         3.42 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1555 TCGA-24-1556 TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 
       41.39        88.50        70.62        45.50        47.70        17.23 
TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 
       90.15        48.33        38.24         3.48         3.72         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
       11.28         5.75         5.49         9.80        22.65        16.41 
TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       11.05         4.87       151.99        44.84        58.16       109.68 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       18.48        28.18        64.01        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
        0.36        47.54        70.45        44.58         0.82        67.36 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 
       16.64        33.11        55.86        53.26        26.93        31.99 
TCGA-25-1315 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       51.06         2.99        12.00        18.58        18.02        15.78 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1635 TCGA-25-1870 
       20.58         7.86         0.30        56.94        51.22        14.93 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2397 
       18.05        85.05        13.02        49.05        38.04        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       26.96        47.18       101.75        38.53        33.70        31.17 
TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1761 TCGA-29-1762 
        0.53        59.67        18.25        41.95        17.00        85.68 
TCGA-29-1763 TCGA-29-1768 TCGA-29-1771 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       66.77        31.23        22.52        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 
        8.35         7.20        34.62        86.17        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2436 TCGA-30-1853 TCGA-30-1857 TCGA-30-1859 
        4.87        42.25         9.76        36.26         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
       44.91        34.78        36.62        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 TCGA-36-1575 
       42.51        44.09        28.73        21.53        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 
       30.05        25.74        27.85        24.23        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-42-2582 
       20.98        18.31        20.52        14.17         6.05        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 
        9.07         9.44         7.56         7.46         7.63        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
       21.14         1.74        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 TCGA-59-2372 
       80.12        22.32         9.40        34.39         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1741 TCGA-61-1895 TCGA-61-1900 
       48.79        44.84        35.80        33.67         1.41         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 
       11.41        13.02        34.13        31.30        37.02        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
        5.52        14.50        17.98        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2110 
       45.40         4.80        71.74        61.64        58.39        44.52 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       22.22        51.91        15.88         6.35        31.07 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.36              0.26 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           125.72            180.16 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            24.99             29.00 
[1] "0.4 - 125.7 (25.0)" "0.3 - 180.2 (29.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
[1] "hr=" "1.1"
D2V2, continuous
D2V3, multiclass
                    clus
vv                   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          151               399
  PERITONEUM (OVARY)               2                 0
D2V4, continuous
D2V5, multiclass
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  I                 3                13
  II               10                16
  III             124               301
  IV               17                65
D2V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      1  153
  1Q GAIN WILD-TYPE    2  398
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO                1                 2
  YES             153               398
D2V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED    124   30
  1Q GAIN WILD-TYPE  326   74
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO              124               326
  YES              30                74

Clustering(3) Variable = 2p gain mutation analysis
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    55  69
  2P GAIN WILD-TYPE 208 216
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              124               424 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               69               216 
$`2P GAIN MUTATED`
TCGA-04-1342 TCGA-04-1347 TCGA-04-1350 TCGA-04-1356 TCGA-04-1364 TCGA-04-1371 
       18.51        63.06        63.98        49.28        33.67        82.36 
TCGA-04-1542 TCGA-04-1646 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-1661 
       84.20        27.88        45.34        29.16         9.47        38.43 
TCGA-09-1672 TCGA-09-1674 TCGA-09-2043 TCGA-09-2048 TCGA-10-0927 TCGA-10-0930 
        5.85         8.55         6.15         4.50        81.47        33.24 
TCGA-10-0933 TCGA-10-0935 TCGA-13-0724 TCGA-13-0730 TCGA-13-0800 TCGA-13-0802 
       11.70        35.41         2.73        17.79         8.12         8.19 
TCGA-13-0888 TCGA-13-0893 TCGA-13-0901 TCGA-13-0906 TCGA-13-0920 TCGA-13-0921 
       70.39        43.36        19.36        44.94        13.81         4.64 
TCGA-13-1407 TCGA-13-1409 TCGA-13-1410 TCGA-13-1412 TCGA-13-1501 TCGA-13-1505 
        6.05         6.84         4.70         5.33        32.84         4.21 
TCGA-13-2057 TCGA-13-2060 TCGA-20-1686 TCGA-23-1021 TCGA-23-1024 TCGA-23-1114 
       14.24         8.58         2.93        47.54        15.39        68.68 
TCGA-23-1121 TCGA-23-1809 TCGA-23-2078 TCGA-23-2643 TCGA-24-0970 TCGA-24-1422 
        6.38         0.53        87.48         4.70        11.64         0.76 
TCGA-24-1424 TCGA-24-1436 TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 TCGA-24-1544 
        6.02         8.55       105.99         9.11        22.19        26.96 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1558 TCGA-24-1560 TCGA-24-1604 TCGA-24-1616 
       41.39        58.09        19.53        44.09        88.34        38.24 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1850 TCGA-24-2019 TCGA-24-2029 TCGA-24-2033 
        3.72         3.81         5.49         4.87        14.43        18.48 
TCGA-24-2261 TCGA-24-2289 TCGA-24-2295 TCGA-25-1312 TCGA-25-1315 TCGA-25-1317 
        0.79        67.36        33.11         1.02        51.06         1.02 
TCGA-25-1319 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1628 TCGA-25-1634 
       65.00         2.96        18.58        15.78        20.58        35.54 
TCGA-25-1870 TCGA-25-1877 TCGA-25-2391 TCGA-25-2393 TCGA-25-2398 TCGA-25-2400 
       14.93        18.05        49.05        38.04        45.01        42.02 
TCGA-25-2409 TCGA-29-1695 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 TCGA-29-1764 
       26.96         0.79        68.28        16.90        18.64        62.93 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1778 TCGA-29-2425 TCGA-29-2429 TCGA-30-1714 
       17.29        12.36        14.93        65.00         4.87        38.07 
TCGA-30-1859 TCGA-30-1862 TCGA-31-1959 TCGA-36-1571 TCGA-36-1575 TCGA-36-1578 
       48.07         6.08         2.17        22.85         8.55        27.85 
TCGA-36-2552 TCGA-42-2589 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-57-1994 
       11.47         7.56        11.38         1.74        22.32        25.02 
TCGA-59-2348 TCGA-59-2372 TCGA-61-1730 TCGA-61-1733 TCGA-61-1899 TCGA-61-1900 
      180.16        44.78         4.34        31.76         8.42         5.79 
TCGA-61-2000 TCGA-61-2009 TCGA-61-2018 TCGA-61-2088 TCGA-61-2097 TCGA-61-2098 
       14.50        39.85        45.40         4.77        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2612 TCGA-61-2614 
       55.50         6.48         6.35         8.58 

$`2P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1361 
       11.87        65.49        48.76        21.57        65.46        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       44.32        76.54        71.47        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
       38.37       119.08        29.06        55.40        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0366 TCGA-09-0367 
       64.64        36.23        31.86        47.70        57.73        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
       35.54         9.96        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 
       61.87        55.36        30.48        17.98         3.02        97.55 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
        6.12        35.15       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 
       20.91        26.93        12.46        54.31        25.91        18.48 
TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
       32.28         3.88        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       24.59        44.55        39.58        12.39        31.07        15.19 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
       28.70        30.35        19.56         8.71         7.79         8.28 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       91.40        74.27        66.64        61.81        67.99        69.01 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       57.47        56.15        57.07        47.38        48.33        47.84 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
       14.89         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1408 TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        5.92         4.21        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       38.37        13.97        16.57         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 
        2.56         3.88         3.09        12.23        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        6.28        23.05        25.94        26.20        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 
       25.38        19.07        16.67         2.66        42.51        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 
        2.24        51.35        54.51         3.22        31.20         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 
       33.30        86.01       129.96         4.27        39.09        33.47 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       58.13        24.95       115.89        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0975 TCGA-24-0979 
        2.76         4.50         7.63        19.63        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1423 TCGA-24-1425 
        6.38         7.82         7.99         7.86         6.25         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1470 TCGA-24-1471 
       43.53        72.92        12.46        45.14         3.42         1.18 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       88.50        70.62        39.88        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 
       10.26        17.23        90.15        48.33         8.32         3.48 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
        4.37        11.28         5.75         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       16.41        11.05        81.11       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       34.82       109.68        53.95        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       57.07        36.16         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 
       44.58         0.82        36.23        16.64        55.86        53.26 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1316 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 
       26.93        31.99        37.02        34.98        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1625 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 
        2.99        12.00        18.02         0.36         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 
       56.94        60.59        51.22        24.99        85.05        13.02 
TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 
        1.02         3.02        12.00        19.99         2.96        29.00 
TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       30.97        78.87        44.71        47.18       101.75        38.53 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       33.70        31.17         0.53        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 
       29.23        34.62        17.00        85.68        66.77        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1776 TCGA-29-1777 
       31.23        22.98        24.36        22.52        11.84        12.30 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 
        8.35         7.20         5.36        34.62        86.17        62.47 
TCGA-29-2428 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 
       45.11        42.25        11.84        11.47         9.76        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 
       36.26         2.47        15.68         0.26        44.91        34.78 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1576 
       44.09        28.73        29.06        21.53        22.55        30.05 
TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       25.74        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
       14.30         9.07         9.44         7.46         7.63        24.03 
TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       21.14        28.96        25.05        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 
        9.40        34.39         2.14         5.39        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 TCGA-61-1736 
       20.94        31.40        18.54        27.88        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       42.48        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
       38.17         1.97         5.52        17.98         3.98        30.61 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 
       30.64         1.18        45.96         4.80        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       61.64        58.39        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 
       22.22        51.91        15.88        31.07 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.53              0.26 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           180.16            151.99 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           18.265            30.015 
[1] "0.5 - 180.2 (18.3)" "0.3 - 152.0 (30.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
[1] "hr=" "1.3"
D3V2, continuous
D3V3, multiclass
                    clus
vv                   2P GAIN MUTATED 2P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          124               426
  PERITONEUM (OVARY)               0                 2
D3V4, continuous
D3V5, multiclass
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  I                 3                13
  II                5                21
  III              97               328
  IV               17                65
D3V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      1  123
  2P GAIN WILD-TYPE    2  428
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                1                 2
  YES             123               428
D3V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     99   25
  2P GAIN WILD-TYPE  351   79
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO               99               351
  YES              25                79

Clustering(4) Variable = 2q gain mutation analysis
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    42  56
  2Q GAIN WILD-TYPE 221 229
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               98               450 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               56               229 
$`2Q GAIN MUTATED`
TCGA-04-1347 TCGA-04-1350 TCGA-04-1356 TCGA-04-1364 TCGA-04-1516 TCGA-04-1542 
       63.06        63.98        49.28        33.67        41.59        84.20 
TCGA-04-1646 TCGA-04-1649 TCGA-04-1655 TCGA-09-0365 TCGA-09-1661 TCGA-09-1672 
       27.88        64.64        45.34         9.47        38.43         5.85 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2048 TCGA-10-0927 TCGA-10-0930 TCGA-10-0933 
        8.55         6.15         4.50        81.47        33.24        11.70 
TCGA-10-0935 TCGA-13-0724 TCGA-13-0730 TCGA-13-0888 TCGA-13-0893 TCGA-13-0901 
       35.41         2.73        17.79        70.39        43.36        19.36 
TCGA-13-0906 TCGA-13-0920 TCGA-13-1407 TCGA-13-1409 TCGA-13-1410 TCGA-13-1412 
       44.94        13.81         6.05         6.84         4.70         5.33 
TCGA-13-1496 TCGA-13-1501 TCGA-13-1505 TCGA-13-2057 TCGA-13-2060 TCGA-23-1021 
        4.24        32.84         4.21        14.24         8.58        47.54 
TCGA-23-1024 TCGA-23-1111 TCGA-23-1114 TCGA-23-1121 TCGA-23-1809 TCGA-23-2643 
       15.39         3.22        68.68         6.38         0.53         4.70 
TCGA-24-1422 TCGA-24-1424 TCGA-24-1430 TCGA-24-1436 TCGA-24-1467 TCGA-24-1469 
        0.76         6.02        28.34         8.55       105.99         9.11 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1553 TCGA-24-1558 TCGA-24-1560 TCGA-24-1604 
       22.19        26.96        58.09        19.53        44.09        88.34 
TCGA-24-1616 TCGA-24-1844 TCGA-24-2033 TCGA-24-2261 TCGA-24-2289 TCGA-24-2295 
       38.24         3.72        18.48         0.79        67.36        33.11 
TCGA-25-1317 TCGA-25-1319 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1634 
        1.02        65.00         2.96        18.58        15.78        35.54 
TCGA-25-1870 TCGA-25-1877 TCGA-29-1695 TCGA-29-1696 TCGA-29-1698 TCGA-29-1764 
       14.93        18.05         0.79        33.70        68.28        62.93 
TCGA-29-1775 TCGA-29-2425 TCGA-29-2429 TCGA-30-1714 TCGA-30-1859 TCGA-30-1862 
       12.36        65.00         4.87        38.07        48.07         6.08 
TCGA-31-1959 TCGA-36-1578 TCGA-36-2552 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 
        2.17        27.85        11.47        11.38         1.74        22.32 
TCGA-57-1994 TCGA-59-2348 TCGA-61-1730 TCGA-61-1743 TCGA-61-1899 TCGA-61-2012 
       25.02       180.16         4.34        43.69         8.42        30.64 
TCGA-61-2018 TCGA-61-2088 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       45.40         4.77        60.62        65.49        55.50         6.48 
TCGA-61-2612 TCGA-61-2614 
        6.35         8.58 

$`2Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 
       18.51        11.87        65.49        48.76        21.57        65.46 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       32.52        44.32        76.54        71.47        82.36        56.55 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 
       19.99        38.37       119.08        29.06        55.40        48.89 
TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0366 
       28.64        36.23        31.86        47.70        29.16        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       17.95        35.54         9.96        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 
       57.57        61.87        55.36        30.48        17.98         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
       97.55         6.12        35.15       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0928 TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       18.48        32.28         3.88        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 
        6.21        24.59        44.55        39.58        12.39        31.07 
TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       15.19        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       61.81        67.99        69.01        57.47        56.15        57.07 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        47.84        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 
       34.06        29.98        21.14        14.89         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1411 
        6.08        10.88         6.61         7.36         5.92         4.21 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       22.39        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1504 
       49.22        54.31        37.61        38.37        13.97        16.57 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
       12.23        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 
        2.93         2.66        42.51        40.54        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       54.51        31.20         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
        4.27        39.09        33.47        58.13        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 
       87.48        91.66        77.00        49.84         2.76         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 
        7.82         7.99         7.86         6.25         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 
        4.80        17.36        19.17        18.67        43.53        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1470 TCGA-24-1471 TCGA-24-1545 TCGA-24-1546 
       12.46        45.14         3.42         1.18        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 
       16.21        56.58        41.06        51.91        41.39        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       70.62        39.88        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 TCGA-24-1845 
       17.23        90.15        48.33         8.32         3.48         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       30.21        16.41        11.05        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 
       28.18        64.01        44.48        57.07        36.16         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 
       47.54        31.63        70.45        44.58         0.82        36.23 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 
       16.64        55.86        53.26         1.02        26.93        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
       51.06        37.02        34.98        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1625 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       12.00        18.02         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 
       56.94        60.59        51.22        24.99        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1697 
       78.87        44.71        47.18       101.75        38.53        31.17 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 
       29.23        34.62        17.00        85.68        66.77        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 
       31.23        22.98        24.36        22.52        17.29        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       12.30        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       86.17        62.47        45.11        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
        9.76        51.91        36.26         2.47        15.68         0.26 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       44.91        34.78        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
        6.71        42.51        44.09        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 
       22.85        22.55         8.55        30.05        25.74        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 
       20.52        14.17         6.05        16.14        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 
        9.44         7.56         7.46         7.63        24.03        21.14 
TCGA-57-1992 TCGA-57-1993 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       28.96        25.05        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 
       20.94        31.40        18.54        27.88        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 
       48.79        44.84        35.80         2.43        33.67         1.41 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       37.02        42.48        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 
        3.98        30.61        39.85         1.18        45.96         4.80 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2104 TCGA-61-2109 
       51.72        71.74        61.64        58.39        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 
       44.52       125.72        22.22        51.91        15.88        31.07 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.53              0.26 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           180.16            151.99 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            18.97             29.08 
[1] "0.5 - 180.2 (19.0)" "0.3 - 152.0 (29.1)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
[1] "hr=" "1.3"
D4V2, continuous
D4V3, multiclass
                    clus
vv                   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           98               452
  PERITONEUM (OVARY)               0                 2
D4V4, continuous
D4V5, multiclass
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  I                 4                12
  II                6                20
  III              72               353
  IV               14                68
D4V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      2   96
  2Q GAIN WILD-TYPE    1  455
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                2                 1
  YES              96               455
D4V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     77   21
  2Q GAIN WILD-TYPE  373   83
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO               77               373
  YES              21                83

Clustering(5) Variable = 3p gain mutation analysis
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    55  51
  3P GAIN WILD-TYPE 208 234
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
              106               442 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               51               234 
$`3P GAIN MUTATED`
TCGA-04-1337 TCGA-04-1338 TCGA-04-1349 TCGA-04-1362 TCGA-04-1516 TCGA-04-1646 
        2.01        46.62        21.57        44.32        41.59        27.88 
TCGA-04-1655 TCGA-09-0364 TCGA-09-1665 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 
       45.34        29.16        41.59        55.36        17.98         5.85 
TCGA-09-1674 TCGA-09-2043 TCGA-10-0935 TCGA-10-0936 TCGA-13-0723 TCGA-13-0724 
        8.55         6.15        35.41        35.80        39.58         2.73 
TCGA-13-0751 TCGA-13-0760 TCGA-13-0795 TCGA-13-0800 TCGA-13-0884 TCGA-13-0911 
       55.17        11.54        19.56         8.12       107.18        27.68 
TCGA-13-0921 TCGA-13-1403 TCGA-13-1410 TCGA-13-1484 TCGA-13-1489 TCGA-13-1495 
        4.64        10.88         4.70        98.04        82.88        49.22 
TCGA-13-1504 TCGA-13-1507 TCGA-13-2060 TCGA-20-1683 TCGA-20-1686 TCGA-23-1109 
       16.57         4.77         8.58        25.38         2.93        51.35 
TCGA-23-1117 TCGA-23-2078 TCGA-23-2079 TCGA-24-0979 TCGA-24-0982 TCGA-24-1424 
       33.30        87.48        91.66        41.56        22.32         6.02 
TCGA-24-1426 TCGA-24-1428 TCGA-24-1434 TCGA-24-1467 TCGA-24-1470 TCGA-24-1474 
        5.36        17.36        18.67       105.99         3.42        22.19 
TCGA-24-1553 TCGA-24-1557 TCGA-24-1558 TCGA-24-1842 TCGA-24-1847 TCGA-24-1850 
       58.09        39.88        19.53         8.32        11.28         5.49 
TCGA-24-1920 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 TCGA-24-2038 
        9.80        16.41        11.05         4.87       151.99        44.48 
TCGA-24-2267 TCGA-24-2295 TCGA-25-1319 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 
       47.54        33.11        65.00         2.96        18.58        15.78 
TCGA-25-1634 TCGA-25-1877 TCGA-25-1878 TCGA-25-2400 TCGA-25-2404 TCGA-29-1701 
       35.54        18.05        85.05        42.02        29.00        16.90 
TCGA-29-1710 TCGA-29-1770 TCGA-29-1778 TCGA-29-1783 TCGA-29-2425 TCGA-29-2428 
       29.23        24.36        14.93         7.20        65.00        45.11 
TCGA-29-2431 TCGA-30-1718 TCGA-30-1859 TCGA-30-1861 TCGA-30-1867 TCGA-30-1892 
       42.25        51.91        48.07        34.78         1.18        48.79 
TCGA-31-1950 TCGA-36-1574 TCGA-36-1578 TCGA-36-2529 TCGA-42-2587 TCGA-42-2590 
       18.77        22.55        27.85        35.05         9.07         7.46 
TCGA-57-1582 TCGA-57-1994 TCGA-59-2351 TCGA-61-1899 TCGA-61-1903 TCGA-61-1904 
       24.03        25.02       116.12         8.42        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1915 TCGA-61-2003 TCGA-61-2008 TCGA-61-2097 
       34.13        31.30        67.73         3.98        30.61        60.62 
TCGA-61-2111 TCGA-61-2611 TCGA-61-2612 TCGA-61-2614 
      125.72        15.88         6.35         8.58 

$`3P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1342 TCGA-04-1343 
       40.24        41.00         1.81        49.15        18.51        11.87 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       65.49        63.06        48.76        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       32.52        33.67        76.54        71.47        82.36        56.55 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 
       19.99        38.37       119.08        29.06        84.20        55.40 
TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       48.89        28.64        64.64        36.23        31.86        47.70 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1673 
       89.33        74.89        57.57        61.87        30.48         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       97.55         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
        3.88        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 
       12.39        31.07        15.19        17.79         2.47        11.18 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.38        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
       38.93        36.72        28.70        30.35         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
       68.91        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       37.08        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.41         6.08         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        6.84         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       29.39        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1494 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       38.17         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       32.84         4.21         4.41         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        3.09        14.24        12.23        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 
       23.05        25.94        26.20        72.20        27.48        19.07 
TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
       16.67         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
        2.24        54.51         3.22        31.20        68.68         4.57 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2081 TCGA-23-2084 
       58.13         0.53        24.95       115.89        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       21.80         7.66        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1425 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 TCGA-24-1436 
        5.95         4.80        28.34        19.17        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1471 TCGA-24-1544 
       72.92        12.46        45.14         9.11         1.18        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1555 TCGA-24-1556 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       41.39        88.50        70.62        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 
       38.24         3.48         3.72         3.81         4.37         5.75 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1930 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       22.65        30.21        81.11        44.84        58.16        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
      109.68        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 
       57.07        36.16         0.79         0.36        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 
       44.58         0.82        67.36        36.23        16.64        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       53.26         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
        1.02        34.98        36.95        33.96         2.99        12.00 
TCGA-25-1625 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       18.02         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 
       60.59        51.22        14.93        24.99        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
        2.96        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 
        0.53        18.64        59.67        18.25        41.95        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       17.00        85.68        66.77        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       22.98        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2429 
        8.35         5.36        34.62        86.17        62.47         4.87 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 
       11.84        11.47         9.76        38.07        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 
       15.68         0.26        44.91         6.08        36.62        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 
       24.26        30.05        45.57        30.18        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       22.85         8.55        30.05        25.74        24.23        24.69 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
        6.05        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
        7.63        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 
       25.05       180.16        80.12        22.32         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       31.40        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        1.41         5.79        11.41        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       56.58        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
       14.50        17.98        39.85        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       58.39        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2113 TCGA-61-2610 TCGA-61-2613 
       44.52        22.22        51.91        31.07 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             1.18              0.26 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           151.99            180.16 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           24.690            28.845 
[1] "1.2 - 152.0 (24.7)" "0.3 - 180.2 (28.8)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
[1] "hr=" "1.1"
D5V2, continuous
D5V3, multiclass
                    clus
vv                   3P GAIN MUTATED 3P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          106               444
  PERITONEUM (OVARY)               1                 1
D5V4, continuous
D5V5, multiclass
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  I                 3                13
  II                6                20
  III              82               343
  IV               13                69
D5V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      0  107
  3P GAIN WILD-TYPE    3  444
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                0                 3
  YES             107               444
D5V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     83   24
  3P GAIN WILD-TYPE  367   80
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO               83               367
  YES              24                80

Clustering(6) Variable = 3q gain mutation analysis
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED    97 105
  3Q GAIN WILD-TYPE 166 180
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              202               346 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              105               180 
$`3Q GAIN MUTATED`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 
        1.81        49.15         2.01        46.62        11.87        65.49 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1371 
       21.57        63.98        32.52        44.32        33.67        82.36 
TCGA-04-1516 TCGA-04-1530 TCGA-04-1542 TCGA-04-1646 TCGA-04-1655 TCGA-09-0364 
       41.59       119.08        84.20        27.88        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-1665 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
        9.47        57.73        41.59        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 TCGA-09-2049 TCGA-09-2053 
        5.85         8.55         6.15         6.12       112.37        39.75 
TCGA-10-0933 TCGA-10-0935 TCGA-10-0936 TCGA-13-0723 TCGA-13-0724 TCGA-13-0727 
       11.70        35.41        35.80        39.58         2.73        15.19 
TCGA-13-0751 TCGA-13-0757 TCGA-13-0760 TCGA-13-0768 TCGA-13-0795 TCGA-13-0800 
       55.17        11.18        11.54         8.42        19.56         8.12 
TCGA-13-0802 TCGA-13-0804 TCGA-13-0884 TCGA-13-0888 TCGA-13-0897 TCGA-13-0901 
        8.19        35.28       107.18        70.39        57.47        19.36 
TCGA-13-0911 TCGA-13-0921 TCGA-13-1403 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
       27.68         4.64        10.88         6.84         4.70         4.21 
TCGA-13-1484 TCGA-13-1487 TCGA-13-1489 TCGA-13-1495 TCGA-13-1496 TCGA-13-1504 
       98.04        22.39        82.88        49.22         4.24        16.57 
TCGA-13-1506 TCGA-13-1507 TCGA-13-2057 TCGA-13-2060 TCGA-13-2065 TCGA-20-0990 
        4.41         4.77        14.24         8.58         8.75        25.94 
TCGA-20-1683 TCGA-20-1686 TCGA-23-1021 TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 
       25.38         2.93        47.54        18.87        51.35        54.51 
TCGA-23-1114 TCGA-23-1117 TCGA-23-1122 TCGA-23-1123 TCGA-23-1809 TCGA-23-2078 
       68.68        33.30        39.09        33.47         0.53        87.48 
TCGA-23-2079 TCGA-23-2084 TCGA-24-0968 TCGA-24-0970 TCGA-24-0979 TCGA-24-0982 
       91.66        49.84        19.63        11.64        41.56        22.32 
TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1467 
        6.02         5.36         4.80        17.36        18.67       105.99 
TCGA-24-1470 TCGA-24-1474 TCGA-24-1553 TCGA-24-1557 TCGA-24-1558 TCGA-24-1604 
        3.42        22.19        58.09        39.88        19.53        88.34 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1847 TCGA-24-1850 TCGA-24-1920 
       38.24         8.32         3.48        11.28         5.49         9.80 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 
       16.41        11.05        81.11         4.87       151.99        34.82 
TCGA-24-2033 TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       18.48        44.48        36.16         0.79         0.36        47.54 
TCGA-24-2280 TCGA-24-2295 TCGA-25-1312 TCGA-25-1317 TCGA-25-1319 TCGA-25-1321 
       70.45        33.11         1.02         1.02        65.00        33.96 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1630 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
        7.86        35.54        14.93        24.99        18.05        85.05 
TCGA-25-2396 TCGA-25-2398 TCGA-25-2400 TCGA-25-2404 TCGA-29-1698 TCGA-29-1701 
        3.02        45.01        42.02        29.00        68.28        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1710 TCGA-29-1761 TCGA-29-1766 TCGA-29-1770 
       18.64        59.67        29.23        17.00        39.09        24.36 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1783 TCGA-29-2425 TCGA-29-2428 
       12.36        11.84        14.93         7.20        65.00        45.11 
TCGA-29-2431 TCGA-29-2432 TCGA-30-1718 TCGA-30-1857 TCGA-30-1859 TCGA-30-1861 
       42.25        11.84        51.91         0.26        48.07        34.78 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1950 TCGA-31-1956 
       36.62         1.18        24.26        48.79        18.77        44.09 
TCGA-36-1569 TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 
       29.06        22.55        30.05        27.85        24.69        35.05 
TCGA-36-2530 TCGA-36-2534 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2587 
       33.01        29.79        14.17        16.14        11.47         9.07 
TCGA-42-2590 TCGA-57-1582 TCGA-57-1586 TCGA-57-1994 TCGA-59-2350 TCGA-59-2351 
        7.46        24.03        22.32        25.02        22.32       116.12 
TCGA-61-1722 TCGA-61-1728 TCGA-61-1733 TCGA-61-1899 TCGA-61-1903 TCGA-61-1904 
        8.05        27.88        31.76         8.42        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-2002 
       34.13        31.30        67.73        43.43        15.75        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 TCGA-61-2111 
        3.98        30.61        60.62        65.49         6.48       125.72 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2614 
       51.91        15.88         6.35         8.58 

$`3Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1342 TCGA-04-1347 TCGA-04-1348 TCGA-04-1351 
       40.24        41.00        18.51        63.06        48.76        65.46 
TCGA-04-1356 TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 
       49.28        76.54        71.47        56.55        19.99        38.37 
TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       29.06        55.40        48.89        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
       31.86        47.70        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1673 TCGA-09-1675 
       89.33        74.89        57.57        61.87         3.02        97.55 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 
       35.15         4.50        71.11        63.09        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0934 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       32.28         3.88        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0755 TCGA-13-0758 
       44.55        12.39        31.07        17.79         2.47        11.38 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 TCGA-13-0792 
       34.06        32.25        31.04        21.40        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0803 
       28.70        30.35         8.71         7.79         8.28        43.82 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       35.28        13.61        68.91        91.40        74.27        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 TCGA-13-0900 
       61.81        67.99        69.01        43.36        56.15        57.07 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 
       34.06        29.98        21.14        14.89        13.81         6.41 
TCGA-13-0924 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1412 
        6.08         6.61         7.36         6.05         5.92         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1485 TCGA-13-1488 
       54.61        87.06        61.71        29.39        20.68        70.82 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       52.44        73.55        38.17        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       13.97        32.84         4.21         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 
        3.09        12.23        10.78         6.28        23.05        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 
       72.20        27.48        19.07        16.67         2.66        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1032 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1118 
       29.10         2.24         3.22        31.20         4.57        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
      129.96         4.27         6.38        58.13        24.95       115.89 
TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0975 
       77.00         2.76         4.70         4.50         7.63        21.80 
TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
        7.66        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 
        7.82         7.99         7.86         0.76         6.25         5.95 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       28.34        19.17        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1469 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
       45.14         9.11         1.18        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 
       16.21        56.58        41.06        51.91        41.39        88.50 
TCGA-24-1556 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       70.62        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       17.23        90.15        48.33         3.72         3.81         4.37 
TCGA-24-1849 TCGA-24-1923 TCGA-24-1924 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
        5.75        22.65        30.21        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2271 
       14.43        53.95        28.18        64.01        57.07        31.63 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 
       44.58         0.82        67.36        36.23        16.64        55.86 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 
       53.26        26.93        31.99        51.06        37.02        34.98 
TCGA-25-1320 TCGA-25-1322 TCGA-25-1628 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
       36.95         2.99        20.58         0.30        56.94        60.59 
TCGA-25-1635 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 
       51.22        13.02        49.05         1.02        38.04        12.00 
TCGA-25-2399 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
       19.99         2.96        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1699 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1762 TCGA-29-1763 
        0.53        18.25        41.95        34.62        85.68        66.77 
TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1777 
       62.93        31.23        22.98        22.52        17.29        12.30 
TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2429 
        8.35         5.36        34.62        86.17        62.47         4.87 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
       11.47         9.76        38.07        36.26         2.47        15.68 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1880 TCGA-30-1891 TCGA-31-1944 TCGA-31-1946 
       44.91         6.08        57.57        30.05        45.57        30.18 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 TCGA-36-1568 TCGA-36-1570 
       22.45         6.71        42.51         2.17        28.73        21.53 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 TCGA-36-1580 TCGA-36-2532 TCGA-36-2537 
       22.85         8.55        25.74        24.23        29.49        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2549 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2591 
       20.52         6.05        14.30         9.44         7.56         7.63 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-59-2348 
       11.38        21.14         1.74        28.96        25.05       180.16 
TCGA-59-2349 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
       80.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1730 TCGA-61-1734 
       11.11        20.94        31.40        18.54         4.34        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        1.41         5.79        11.41        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2009 
       56.58        38.17         1.97         5.52        14.50        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2101 TCGA-61-2104 
       51.72        71.74        61.64        58.39        55.50        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2613 
       20.68        44.52        22.22        31.07 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.26              0.30 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           151.99            180.16 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           24.145            30.015 
[1] "0.3 - 152.0 (24.1)" "0.3 - 180.2 (30.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
[1] "hr=" "1.1"
D6V2, continuous
D6V3, multiclass
                    clus
vv                   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          202               348
  PERITONEUM (OVARY)               2                 0
D6V4, continuous
D6V5, multiclass
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  I                 5                11
  II               10                16
  III             161               264
  IV               24                58
D6V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      0  204
  3Q GAIN WILD-TYPE    3  347
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                0                 3
  YES             204               347
D6V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED    159   45
  3Q GAIN WILD-TYPE  291   59
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO              159               291
  YES              45                59

Clustering(7) Variable = 4p gain mutation analysis
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED    11  19
  4P GAIN WILD-TYPE 252 266
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               30               518 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               19               266 
$`4P GAIN MUTATED`
TCGA-04-1349 TCGA-04-1356 TCGA-04-1364 TCGA-04-1530 TCGA-04-1646 TCGA-09-1668 
       21.57        49.28        33.67       119.08        27.88        55.36 
TCGA-09-2048 TCGA-13-0714 TCGA-13-0802 TCGA-13-0883 TCGA-13-2060 TCGA-23-1026 
        4.50         6.21         8.19        68.91         8.58        26.83 
TCGA-23-1110 TCGA-23-1114 TCGA-23-2645 TCGA-24-1427 TCGA-24-1428 TCGA-24-1558 
       54.51        68.68         4.50         4.80        17.36        19.53 
TCGA-24-1843 TCGA-24-1928 TCGA-24-2033 TCGA-25-1635 TCGA-25-1877 TCGA-25-2392 
        3.48        11.05        18.48        51.22        18.05         1.02 
TCGA-25-2396 TCGA-29-1691 TCGA-30-1718 TCGA-36-1570 TCGA-61-1915 TCGA-61-1918 
        3.02        47.18        51.91        21.53        67.73        15.75 

$`4P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       18.51        11.87        65.49        63.06        48.76        63.98 
TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       65.46        32.52        44.32        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 TCGA-04-1542 
       56.55        41.59        19.99        38.37        29.06        84.20 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 
       55.40        48.89        28.64        64.64        36.23        31.86 
TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 
       47.70        45.34        29.16         9.47        57.73        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       35.54         9.96        38.43        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       57.57        61.87        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 
        8.55        97.55         6.15         6.12        35.15       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
       71.11        63.09        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        7.79         8.12         8.28        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       13.61       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 
       61.81        67.99        69.01        43.36        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       57.07        19.36        47.38        48.33        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.61         7.36         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
       12.23        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
        2.93         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       51.35         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       49.84         2.76         4.70         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1430 
        0.76         6.25         6.02         5.95         5.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       19.17        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 
       90.15        88.34        48.33        38.24         8.32         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.81         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       22.65        30.21        16.41        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 
        7.86         0.30        56.94        60.59        35.54        14.93 
TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2397 
       24.99        85.05        13.02        49.05        38.04        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       26.96        78.87        44.71       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       65.00        62.47        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
       11.47         9.76        38.07        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 
        0.26        48.07        44.91        34.78         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
        1.18        57.57        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       30.18        18.77        22.45         6.71        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
        2.17        28.73        29.06        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       30.05        25.74        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
        6.05        16.14        11.47        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.56         7.46         7.63        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        5.39        44.78        11.11         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       18.54        27.88         4.34        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 
       31.30        37.02        42.48        48.92        56.58        43.43 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       30.61        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       44.52       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             1.02              0.26 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           119.08            180.16 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           20.530            28.715 
[1] "1.0 - 119.1 (20.5)" "0.3 - 180.2 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D7V2, continuous
D7V3, multiclass
                    clus
vv                   4P GAIN MUTATED 4P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           30               520
  PERITONEUM (OVARY)               0                 2
D7V4, continuous
D7V5, multiclass
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  I                 0                16
  II                2                24
  III              23               402
  IV                5                77
D7V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      0   30
  4P GAIN WILD-TYPE    3  521
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                0                 3
  YES              30               521
D7V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED     21    9
  4P GAIN WILD-TYPE  429   95
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO               21               429
  YES               9                95

Clustering(8) Variable = 4q gain mutation analysis
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     7  10
  4Q GAIN WILD-TYPE 256 275
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               17               531 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               10               275 
$`4Q GAIN MUTATED`
TCGA-04-1349 TCGA-04-1356 TCGA-04-1530 TCGA-09-1668 TCGA-10-0936 TCGA-13-0714 
       21.57        49.28       119.08        55.36        35.80         6.21 
TCGA-13-0802 TCGA-13-2060 TCGA-23-2645 TCGA-24-1427 TCGA-24-1558 TCGA-24-1843 
        8.19         8.58         4.50         4.80        19.53         3.48 
TCGA-25-1877 TCGA-25-2396 TCGA-29-1691 TCGA-29-1702 TCGA-61-1915 
       18.05         3.02        47.18        18.64        67.73 

$`4Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       18.51        11.87        65.49        63.06        48.76        63.98 
TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       65.46        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 
       82.36        56.55        41.59        19.99        38.37        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 
       74.89        41.59        57.57        61.87        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       15.12        19.86        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       11.18        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 
       19.56         8.71         7.79         8.12         8.28        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       35.28        35.28        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       74.27        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       70.82        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
        4.24        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       16.57         4.21         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 
        3.88         3.09        14.24        12.23        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        6.28        23.05        25.94        26.20        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       25.38        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       49.84         2.76         4.70         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1428 
        0.76         6.25         6.02         5.95         5.36        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       39.88        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       17.23        90.15        88.34        48.33        38.24         8.32 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 
       33.11        55.86        53.26         1.02        26.93        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
       51.06        37.02         1.02        34.98        65.00        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       33.96         2.99        12.00         2.96        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       15.78         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 
       60.59        35.54        51.22        14.93        24.99        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 
       13.02        49.05         1.02        38.04        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        44.71       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 
       31.17        68.28         0.53        16.90        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       17.29        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       45.11         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       38.07        51.91        36.26         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       30.05        25.74        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
        6.05        16.14        11.47        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.56         7.46         7.63        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        5.39        44.78        11.11         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       18.54        27.88         4.34        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 
       31.30        37.02        42.48        48.92        56.58        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
        3.98        30.61        39.85        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       58.39        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       20.68        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             3.02              0.26 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           119.08            180.16 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            18.64             28.64 
[1] "3.0 - 119.1 (18.6)" "0.3 - 180.2 (28.6)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D8V2, continuous
D8V3, multiclass
                    clus
vv                   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           17               533
  PERITONEUM (OVARY)               0                 2
D8V4, continuous
D8V5, multiclass
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  I                 0                16
  II                2                24
  III              12               413
  IV                3                79
D8V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      0   17
  4Q GAIN WILD-TYPE    3  534
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                0                 3
  YES              17               534
D8V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED     10    7
  4Q GAIN WILD-TYPE  440   97
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO               10               440
  YES               7                97

Clustering(9) Variable = 5p gain mutation analysis
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED    66  70
  5P GAIN WILD-TYPE 197 215
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              136               412 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               70               215 
$`5P GAIN MUTATED`
TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1530 TCGA-04-1542 
        2.01        18.51        65.49        63.06       119.08        84.20 
TCGA-04-1646 TCGA-04-1654 TCGA-09-0367 TCGA-09-1661 TCGA-09-1674 TCGA-09-1675 
       27.88        47.70        17.95        38.43         8.55        97.55 
TCGA-09-2043 TCGA-10-0927 TCGA-10-0930 TCGA-10-0933 TCGA-10-0936 TCGA-13-0717 
        6.15        81.47        33.24        11.70        35.80        24.59 
TCGA-13-0723 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 
       39.58        12.39        15.19        17.79        55.17        11.18 
TCGA-13-0760 TCGA-13-0766 TCGA-13-0792 TCGA-13-0801 TCGA-13-0883 TCGA-13-0886 
       11.54        21.40        36.72         8.28        68.91        74.27 
TCGA-13-0889 TCGA-13-0899 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0911 
       61.81        56.15        48.33        47.84        44.94        27.68 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1481 TCGA-13-1484 
       10.88         6.61         6.05         5.92        87.06        98.04 
TCGA-13-1488 TCGA-13-1492 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 
       70.82        73.55        32.84        16.57         4.41         4.77 
TCGA-13-1512 TCGA-20-1685 TCGA-20-1686 TCGA-23-1024 TCGA-23-1029 TCGA-23-1111 
        3.09        16.67         2.93        15.39         8.81         3.22 
TCGA-23-1116 TCGA-23-1122 TCGA-23-1809 TCGA-23-2079 TCGA-23-2084 TCGA-23-2643 
        4.57        39.09         0.53        91.66        49.84         4.70 
TCGA-23-2645 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1104 TCGA-24-1417 
        4.50        21.80        41.56        22.32        63.55         7.82 
TCGA-24-1418 TCGA-24-1423 TCGA-24-1425 TCGA-24-1428 TCGA-24-1436 TCGA-24-1471 
        7.99         6.25         5.95        17.36         8.55         1.18 
TCGA-24-1474 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1604 
       22.19        58.09        88.50        70.62        39.88        88.34 
TCGA-24-1616 TCGA-24-1845 TCGA-24-1847 TCGA-24-1850 TCGA-24-1923 TCGA-24-2020 
       38.24         3.81        11.28         5.49        22.65       151.99 
TCGA-24-2026 TCGA-24-2260 TCGA-24-2267 TCGA-24-2288 TCGA-24-2289 TCGA-24-2295 
       34.82        36.16        47.54         0.82        67.36        33.11 
TCGA-24-2298 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1329 TCGA-25-1627 
       53.26        34.98        65.00        33.96         2.96         0.36 
TCGA-25-1634 TCGA-25-1877 TCGA-25-1878 TCGA-25-2396 TCGA-29-1688 TCGA-29-1691 
       35.54        18.05        85.05         3.02        78.87        47.18 
TCGA-29-1695 TCGA-29-1707 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 
        0.79        41.95        17.00        66.77        39.09        31.23 
TCGA-29-1770 TCGA-29-1774 TCGA-29-2425 TCGA-29-2432 TCGA-30-1718 TCGA-31-1950 
       24.36        17.29        65.00        11.84        51.91        18.77 
TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 TCGA-36-2548 TCGA-42-2582 TCGA-42-2588 
       27.85        24.69        35.05        14.17        14.30         9.44 
TCGA-57-1582 TCGA-57-1585 TCGA-57-1993 TCGA-61-1725 TCGA-61-1733 TCGA-61-1903 
       24.03         1.74        25.05        31.40        31.76        13.02 
TCGA-61-1918 TCGA-61-1919 TCGA-61-2003 TCGA-61-2012 TCGA-61-2087 TCGA-61-2098 
       15.75        38.17         3.98        30.64         4.80        65.49 
TCGA-61-2101 TCGA-61-2111 TCGA-61-2612 TCGA-61-2614 
       55.50       125.72         6.35         8.58 

$`5P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00         1.81        49.15        46.62        11.87 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 
       48.76        21.57        63.98        65.46        49.28        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       44.32        33.67        76.54        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 
       41.59        19.99        38.37        29.06        55.40        48.89 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 
       28.64        64.64        36.23        31.86        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 
        9.47        57.73        35.54         9.96        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
        5.85         3.02         6.12        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
       71.11        63.09        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 
       54.31        25.91        18.48        32.28         3.88        35.41 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0724 TCGA-13-0726 
       15.12        19.86         6.21        44.55         2.73        31.07 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0768 
        2.47        11.38        34.06        32.25        31.04         8.42 
TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       38.93        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.12         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0887 TCGA-13-0888 TCGA-13-0890 TCGA-13-0891 
      107.18        91.40        66.64        70.39        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0908 
       43.36        57.47        57.07        19.36        47.38        44.84 
TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       37.08        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1405 TCGA-13-1409 TCGA-13-1410 
        4.64         6.41         6.08         7.36         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 TCGA-13-1485 
        4.21         5.33        54.61        61.71        29.39        20.68 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       22.39        82.88        52.44        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1505 TCGA-13-1509 
       54.31        37.61        38.37        13.97         4.21         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        2.56         3.88        14.24        12.23         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       27.48        25.38        19.07         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 
       40.54        26.83        31.73        49.41        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 
        2.24        51.35        54.51        31.20        68.68        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 
       86.01       129.96         4.27         6.38        33.47        58.13 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 TCGA-24-0966 
       24.95       115.89        87.48        77.00         2.76         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0980 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 
       19.63        11.64         7.66        54.08        47.41         6.31 
TCGA-24-1416 TCGA-24-1419 TCGA-24-1422 TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 
        6.38         7.86         0.76         6.02         5.36         4.80 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 
       28.34        19.17        18.67        43.53        72.92        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1544 TCGA-24-1545 
       45.14       105.99         9.11         3.42        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       17.23        90.15        48.33         8.32         3.48         3.72 
TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 
        4.37         5.75         9.80        30.21        16.41        11.05 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
       81.11         4.87        44.84        58.16       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2290 
        0.79         0.36        31.63        70.45        44.58        36.23 
TCGA-24-2293 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       16.64        55.86         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 
       37.02         1.02        36.95         2.99        12.00        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       18.02        15.78        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 
       60.59        51.22        14.93        24.99        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
        1.02        38.04        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1693 
        2.96        29.00        30.97        26.96        44.71       101.75 
TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
       38.53        33.70        31.17        68.28         0.53        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1762 
       18.64        59.67        18.25        29.23        34.62        85.68 
TCGA-29-1764 TCGA-29-1769 TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       62.93        22.98        22.52        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 
       62.47        45.11         4.87        42.25        11.47         9.76 
TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       38.07        36.26         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 
       24.26        30.05        48.79        45.57        30.18        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       24.23        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2587 TCGA-42-2589 TCGA-42-2590 
        6.05        16.14        11.47         9.07         7.56         7.46 
TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 
        7.63        11.38        21.14        22.32        28.96        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       18.54        27.88         4.34        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        5.79        11.41         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1995 
       42.48        48.92        56.58        67.73        43.43         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 
        5.52        14.50        17.98        30.61        39.85         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96        45.40         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       58.39        60.62         6.48        76.83        20.68        44.52 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 
       22.22        51.91        15.88        31.07 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.36              0.26 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           151.99            180.16 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           24.870            28.715 
[1] "0.4 - 152.0 (24.9)" "0.3 - 180.2 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, multiclass
                    clus
vv                   5P GAIN MUTATED 5P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          137               413
  PERITONEUM (OVARY)               2                 0
D9V4, continuous
D9V5, multiclass
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  I                 5                11
  II                7                19
  III             107               318
  IV               19                63
D9V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      1  138
  5P GAIN WILD-TYPE    2  413
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO                1                 2
  YES             138               413
D9V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED    115   24
  5P GAIN WILD-TYPE  335   80
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO              115               335
  YES              24                80

Clustering(10) Variable = 5q gain mutation analysis
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    16  14
  5Q GAIN WILD-TYPE 247 271
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               30               518 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               14               271 
$`5Q GAIN MUTATED`
TCGA-04-1337 TCGA-04-1347 TCGA-04-1530 TCGA-10-0930 TCGA-10-0936 TCGA-13-0792 
        2.01        63.06       119.08        33.24        35.80        36.72 
TCGA-13-0911 TCGA-13-1492 TCGA-23-1111 TCGA-23-1116 TCGA-23-2079 TCGA-23-2645 
       27.68        73.55         3.22         4.57        91.66         4.50 
TCGA-24-1104 TCGA-24-1417 TCGA-24-1428 TCGA-24-1436 TCGA-24-1471 TCGA-24-1556 
       63.55         7.82        17.36         8.55         1.18        70.62 
TCGA-24-1604 TCGA-24-1845 TCGA-24-2288 TCGA-25-1329 TCGA-29-1688 TCGA-29-1763 
       88.34         3.81         0.82         2.96        78.87        66.77 
TCGA-29-2432 TCGA-36-1569 TCGA-36-2529 TCGA-61-1725 TCGA-61-2612 TCGA-61-2614 
       11.84        29.06        35.05        31.40         6.35         8.58 

$`5Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81        49.15        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       11.87        65.49        48.76        21.57        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       49.28        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 
       82.36        56.55        41.59        19.99        38.37        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       81.47        18.48        32.28        11.70         3.88        35.41 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       15.12        19.86         6.21        24.59        44.55        39.58 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
        2.73        12.39        31.07        15.19        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
        2.47        11.18        11.38        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 
       31.04        21.40         8.42        38.93        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       70.82        82.88        52.44        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
        4.21         4.41         4.77         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
        3.09        14.24        12.23         8.58        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        6.28        23.05        25.94        26.20        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       25.38        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       31.20        68.68        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        6.38        39.09        33.47        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
      115.89        87.48        77.00        49.84         2.76         4.70 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 
       22.32        54.08        47.41         6.31         6.38         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 
        4.80        28.34        19.17        18.67        43.53        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 
       12.46        45.14       105.99         9.11         3.42        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 
       51.91        41.39        58.09        88.50        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       90.15        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       30.21        16.41        11.05        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 
        2.96        29.00        30.97        26.96        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 
       29.23        34.62        17.00        85.68        62.93        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       31.23        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       11.84        12.30        14.93         8.35         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       42.25        11.47         9.76        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1570 TCGA-36-1571 
       42.51        44.09         2.17        28.73        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.55         8.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       24.69        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       14.17         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       18.54        27.88         4.34        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       31.30        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       17.98         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2613 
       15.88        31.07 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.82              0.26 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           119.08            180.16 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            28.37             28.26 
[1] "0.8 - 119.1 (28.4)" "0.3 - 180.2 (28.3)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
[1] "hr=" "1.3"
D10V2, continuous
D10V3, multiclass
                    clus
vv                   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           30               520
  PERITONEUM (OVARY)               1                 1
D10V4, continuous
D10V5, multiclass
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  I                 1                15
  II                2                24
  III              24               401
  IV                4                78
D10V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      0   31
  5Q GAIN WILD-TYPE    3  520
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                0                 3
  YES              31               520
D10V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     25    6
  5Q GAIN WILD-TYPE  425   98
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO               25               425
  YES               6                98

Clustering(11) Variable = 6p gain mutation analysis
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    64  54
  6P GAIN WILD-TYPE 199 231
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              118               430 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               54               231 
$`6P GAIN MUTATED`
TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 TCGA-04-1362 TCGA-04-1364 
       18.51        65.49        63.06        21.57        44.32        33.67 
TCGA-04-1525 TCGA-09-0364 TCGA-09-0366 TCGA-09-1662 TCGA-09-1665 TCGA-09-1667 
       38.37        29.16        57.73        89.33        41.59        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1674 TCGA-09-2049 TCGA-09-2051 TCGA-09-2054 
       55.36        30.48         8.55       112.37        63.09        20.91 
TCGA-10-0930 TCGA-10-0933 TCGA-13-0717 TCGA-13-0724 TCGA-13-0760 TCGA-13-0764 
       33.24        11.70        24.59         2.73        11.54        31.04 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 TCGA-13-0800 TCGA-13-0886 TCGA-13-0920 
       36.72        28.70        19.56         8.12        74.27        13.81 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1407 TCGA-13-1488 TCGA-13-1496 TCGA-13-1499 
        6.41         6.08         6.05        70.82         4.24        38.37 
TCGA-13-1510 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-20-0990 TCGA-20-1685 
        2.56        14.24         8.58        10.78        25.94        16.67 
TCGA-20-1686 TCGA-23-1023 TCGA-23-1031 TCGA-23-1110 TCGA-23-1114 TCGA-23-1120 
        2.93        40.54        18.87        54.51        68.68         4.27 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-24-0982 TCGA-24-1417 
       58.13         0.53       115.89        91.66        22.32         7.82 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1469 TCGA-24-1474 TCGA-24-1558 TCGA-24-1563 
        6.25         6.02         9.11        22.19        19.53        47.70 
TCGA-24-1604 TCGA-24-2026 TCGA-24-2254 TCGA-24-2261 TCGA-24-2281 TCGA-25-1317 
       88.34        34.82        57.07         0.79        44.58         1.02 
TCGA-25-1319 TCGA-25-1323 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
       65.00        12.00        35.54        14.93        24.99        18.05 
TCGA-25-1878 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-29-1695 TCGA-29-1698 
       85.05        42.02         2.96        29.00         0.79        68.28 
TCGA-29-1702 TCGA-29-1710 TCGA-29-1764 TCGA-29-1770 TCGA-29-1774 TCGA-29-1778 
       18.64        29.23        62.93        24.36        17.29        14.93 
TCGA-29-2414 TCGA-29-2425 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       86.17        65.00         6.71        42.51        44.09         2.17 
TCGA-36-1576 TCGA-36-1581 TCGA-36-2529 TCGA-36-2545 TCGA-36-2552 TCGA-57-1582 
       30.05        24.69        35.05        18.31        11.47        24.03 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 TCGA-61-1722 TCGA-61-1730 TCGA-61-1741 
        1.74        22.32        25.05         8.05         4.34        33.67 
TCGA-61-1743 TCGA-61-1899 TCGA-61-1907 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 
       43.69         8.42        31.30        67.73        15.75        38.17 
TCGA-61-1998 TCGA-61-2003 TCGA-61-2009 TCGA-61-2088 TCGA-61-2097 TCGA-61-2098 
        5.52         3.98        39.85         4.77        60.62        65.49 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2612 TCGA-61-2614 
       22.22        51.91         6.35         8.58 

$`6P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 
       11.87        48.76        63.98        65.46        49.28        32.52 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1664 
        9.47        17.95        35.54         9.96        38.43        74.89 
TCGA-09-1666 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 
       57.57        17.98         5.85         3.02        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2053 TCGA-09-2055 
        6.12        35.15         4.50        71.11        39.75        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 
       12.46        54.31        25.91        81.47        18.48        32.28 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       44.55        39.58        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 
       55.17         2.47        11.18        11.38        34.06        32.25 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
       21.40         8.42        38.93        30.35         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
       68.91       107.18        91.40        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0921 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 
        4.64        10.88         6.61         7.36         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        4.70         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 
       29.39        98.04        20.68        22.39        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 
       73.55        38.17        49.22        54.31        37.61        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
        3.88         3.09        12.23         8.75         6.28        23.05 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1687 
       26.20        72.20        27.48        25.38        19.07         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       47.54        42.51        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 
        8.81        29.10         2.24        51.35         3.22        31.20 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 TCGA-23-1122 
        4.57        33.30        86.01       129.96         6.38        39.09 
TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
       33.47        24.95        87.48        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       41.56         7.66        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 
        6.38         7.99         7.86         0.76         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        4.80        17.36        28.34        19.17        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 
        8.55        72.92        12.46        45.14       105.99         3.42 
TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        1.18        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       39.88        44.09        45.50        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       90.15        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.81         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
      151.99        44.84        58.16       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 TCGA-24-2262 
       18.48        28.18        64.01        44.48        36.16         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       47.54        31.63        70.45         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       16.64        33.11        55.86        53.26         1.02        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 
       31.99        51.06        37.02        34.98        36.95        33.96 
TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
        2.99         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 
       20.58         7.86         0.30        56.94        60.59        51.22 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
       45.01        19.99        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 
       47.18       101.75        38.53        33.70        31.17         0.53 
TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1761 
       16.90        59.67        18.25        41.95        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 
       85.68        66.77        39.09        31.23        22.98        22.52 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       12.36        11.84        12.30         8.35         7.20         5.36 
TCGA-29-1785 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       34.62        62.47        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       11.47         9.76        38.07        51.91        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-36-1568 TCGA-36-1569 
       45.57        30.18        18.77        22.45        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 
       21.53        22.85        22.55         8.55        25.74        27.85 
TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       24.23        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2547 TCGA-36-2548 
       23.80        21.60         2.24        20.98        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
        6.05        16.14        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-57-1992 TCGA-57-1994 
        7.46         7.63        11.38        21.14        28.96        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 
        2.14         5.39        44.78        11.11        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       18.54        27.88        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       35.80         2.43         1.41         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
        9.07        34.13        37.02        42.48        48.92        56.58 
TCGA-61-1917 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2012 
       43.43         1.97        14.50        17.98        30.61        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 
        1.18        45.96        45.40         4.80        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       61.64        58.39        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2611 TCGA-61-2613 
       44.52       125.72        15.88        31.07 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.53              0.26 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           115.89            180.16 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           24.640            28.845 
[1] "0.5 - 115.9 (24.6)" "0.3 - 180.2 (28.8)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
[1] "hr=" "1.1"
D11V2, continuous
D11V3, multiclass
                    clus
vv                   6P GAIN MUTATED 6P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          120               430
  PERITONEUM (OVARY)               1                 1
D11V4, continuous
D11V5, multiclass
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  I                 2                14
  II               11                15
  III              92               333
  IV               15                67
D11V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      0  121
  6P GAIN WILD-TYPE    3  430
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                0                 3
  YES             121               430
D11V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     96   25
  6P GAIN WILD-TYPE  354   79
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO               96               354
  YES              25                79

Clustering(12) Variable = 6q gain mutation analysis
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    34  26
  6Q GAIN WILD-TYPE 229 259
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               60               488 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               26               259 
$`6Q GAIN MUTATED`
TCGA-04-1342 TCGA-04-1346 TCGA-09-0364 TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 
       18.51        65.49        29.16        41.59        61.87        55.36 
TCGA-09-1669 TCGA-09-1674 TCGA-09-2051 TCGA-10-0930 TCGA-10-0933 TCGA-13-0723 
       30.48         8.55        63.09        33.24        11.70        39.58 
TCGA-13-0724 TCGA-13-0760 TCGA-13-0764 TCGA-13-0795 TCGA-13-0800 TCGA-13-0920 
        2.73        11.54        31.04        19.56         8.12        13.81 
TCGA-13-0924 TCGA-13-1488 TCGA-13-1496 TCGA-13-1499 TCGA-13-2057 TCGA-13-2061 
        6.08        70.82         4.24        38.37        14.24        10.78 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1114 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 
       54.51         3.22        68.68        58.13         0.53       115.89 
TCGA-23-2079 TCGA-24-1424 TCGA-24-1469 TCGA-24-1474 TCGA-24-1558 TCGA-24-1563 
       91.66         6.02         9.11        22.19        19.53        47.70 
TCGA-24-1850 TCGA-24-2281 TCGA-25-1871 TCGA-25-1877 TCGA-25-2404 TCGA-29-1695 
        5.49        44.58        24.99        18.05        29.00         0.79 
TCGA-29-1698 TCGA-29-1702 TCGA-29-1764 TCGA-29-1770 TCGA-29-1774 TCGA-29-1778 
       68.28        18.64        62.93        24.36        17.29        14.93 
TCGA-29-2425 TCGA-30-1862 TCGA-36-2552 TCGA-57-1582 TCGA-57-1993 TCGA-61-1741 
       65.00         6.08        11.47        24.03        25.05        33.67 
TCGA-61-1743 TCGA-61-1915 TCGA-61-2003 TCGA-61-2088 TCGA-61-2113 TCGA-61-2612 
       43.69        67.73         3.98         4.77        22.22         6.35 

$`6Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       11.87        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       49.28        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 
       64.64        36.23        31.86        47.70        45.34         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1666 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 
       74.89        57.57        17.98         5.85         3.02        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        6.15         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       81.47        18.48        32.28         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0725 
       15.12        19.86         6.21        24.59        44.55        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       31.07        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.38        34.06        32.25        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
       36.72        28.70        30.35         8.71         7.79         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0921 TCGA-13-0923 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        4.64         6.41        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 
       82.88        52.44        73.55        38.17        49.22        54.31 
TCGA-13-1498 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       37.61        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 
        4.77         4.14         2.56         3.88         3.09        12.23 
TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
        8.58         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       72.20        27.48        25.38        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
        2.66        47.54        42.51        40.54        15.39        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       51.35        31.20         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 
        4.27         6.38        39.09        33.47        24.95        87.48 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       54.08        63.55        47.41         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 
        7.99         7.86         0.76         6.25         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        4.80        17.36        28.34        19.17        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 
        8.55        72.92        12.46        45.14       105.99         3.42 
TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        1.18        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       39.88        44.09        45.50        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 
        3.72         3.81         4.37        11.28         5.75         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       53.26         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
        1.02        34.98        65.00        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       20.58         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       51.22        14.93        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
        2.96        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 
      101.75        38.53        33.70        31.17         0.53        16.90 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 
       85.68        66.77        39.09        31.23        22.98        22.52 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       12.36        11.84        12.30         8.35         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
       34.62        86.17        62.47        45.11         4.87        42.25 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       11.84        11.47         9.76        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.55         8.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 
       20.52        14.17         6.05        16.14        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 
        9.44         7.56         7.46         7.63        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
        1.74        22.32        28.96        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       35.80         2.43         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       13.02         9.07        34.13        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       48.92        56.58        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
        5.52        14.50        17.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 
        1.18        45.96        45.40         4.80        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 
       76.83        20.68        44.52       125.72        51.91        15.88 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.53              0.26 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           115.89            180.16 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           23.125            28.715 
[1] "0.5 - 115.9 (23.1)" "0.3 - 180.2 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, multiclass
                    clus
vv                   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           61               489
  PERITONEUM (OVARY)               0                 2
D12V4, continuous
D12V5, multiclass
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  I                 0                16
  II                8                18
  III              46               379
  IV                7                75
D12V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      0   61
  6Q GAIN WILD-TYPE    3  490
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                0                 3
  YES              61               490
D12V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     49   12
  6Q GAIN WILD-TYPE  401   92
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO               49               401
  YES              12                92

Clustering(13) Variable = 7p gain mutation analysis
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    56  64
  7P GAIN WILD-TYPE 207 221
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              120               428 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               64               221 
$`7P GAIN MUTATED`
TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1351 TCGA-04-1364 TCGA-04-1367 
        2.01        18.51        65.49        65.46        33.67        71.47 
TCGA-04-1542 TCGA-04-1646 TCGA-04-1649 TCGA-04-1652 TCGA-09-0365 TCGA-09-0367 
       84.20        27.88        64.64        31.86         9.47        17.95 
TCGA-09-1661 TCGA-09-1665 TCGA-09-1672 TCGA-09-1674 TCGA-09-2043 TCGA-09-2045 
       38.43        41.59         5.85         8.55         6.15        35.15 
TCGA-09-2049 TCGA-09-2054 TCGA-10-0926 TCGA-13-0717 TCGA-13-0730 TCGA-13-0757 
      112.37        20.91        25.91        24.59        17.79        11.18 
TCGA-13-0760 TCGA-13-0807 TCGA-13-0883 TCGA-13-0888 TCGA-13-0899 TCGA-13-0901 
       11.54        13.61        68.91        70.39        56.15        19.36 
TCGA-13-0904 TCGA-13-0921 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 
       48.33         4.64         6.05         5.92         4.70         4.21 
TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1496 TCGA-13-1504 TCGA-13-1509 
       61.71        98.04        20.68         4.24        16.57         4.14 
TCGA-13-2059 TCGA-13-2060 TCGA-20-0991 TCGA-20-1686 TCGA-23-1024 TCGA-23-1032 
       12.23         8.58        26.20         2.93        15.39         2.24 
TCGA-23-1111 TCGA-23-1116 TCGA-23-1121 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        3.22         4.57         6.38        58.13         0.53        24.95 
TCGA-23-2079 TCGA-24-0980 TCGA-24-1424 TCGA-24-1428 TCGA-24-1431 TCGA-24-1474 
       91.66         7.66         6.02        17.36        19.17        22.19 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1845 TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 
       39.88        19.53         3.81         4.87       151.99        34.82 
TCGA-24-2030 TCGA-24-2038 TCGA-24-2261 TCGA-24-2267 TCGA-24-2288 TCGA-24-2295 
       53.95        44.48         0.79        47.54         0.82        33.11 
TCGA-25-1312 TCGA-25-1320 TCGA-25-1323 TCGA-25-1627 TCGA-25-1628 TCGA-25-1870 
        1.02        36.95        12.00         0.36        20.58        14.93 
TCGA-25-1871 TCGA-25-2400 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 TCGA-29-1707 
       24.99        42.02         0.79        68.28         0.53        41.95 
TCGA-29-1710 TCGA-29-1775 TCGA-29-1778 TCGA-29-1783 TCGA-29-2428 TCGA-29-2429 
       29.23        12.36        14.93         7.20        45.11         4.87 
TCGA-29-2432 TCGA-29-2434 TCGA-30-1853 TCGA-30-1856 TCGA-30-1862 TCGA-30-1867 
       11.84        11.47        36.26        15.68         6.08         1.18 
TCGA-36-2547 TCGA-36-2548 TCGA-42-2582 TCGA-42-2587 TCGA-59-2348 TCGA-59-2349 
       20.52        14.17        14.30         9.07       180.16        80.12 
TCGA-59-2372 TCGA-61-1730 TCGA-61-1734 TCGA-61-1737 TCGA-61-1743 TCGA-61-1899 
       44.78         4.34        28.47        44.84        43.69         8.42 
TCGA-61-1904 TCGA-61-1907 TCGA-61-1911 TCGA-61-2003 TCGA-61-2088 TCGA-61-2098 
        9.07        31.30        42.48         3.98         4.77        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 TCGA-61-2113 TCGA-61-2614 
       55.50         6.48        76.83        44.52        22.22         8.58 

$`7P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00         1.81        49.15        46.62        11.87 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 
       63.06        48.76        21.57        63.98        49.28        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       44.32        76.54        82.36        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
       38.37       119.08        29.06        55.40        48.89        28.64 
TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0366 TCGA-09-0369 
       36.23        47.70        45.34        29.16        57.73        35.54 
TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
        9.96        89.33        74.89        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 TCGA-09-2048 
       30.48        17.98         3.02        97.55         6.12         4.50 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       71.11        63.09        39.75        26.93        12.46        54.31 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 
       35.41        35.80        15.12        19.86         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 
       39.58         2.73        12.39        31.07        15.19        55.17 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
        2.47        11.38        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       35.28        35.28       107.18        91.40        74.27        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 
       61.81        67.99        69.01        43.36        57.47        57.07 
TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 
       34.06        29.98        21.14        14.89        13.81         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1409 TCGA-13-1412 
        6.08        10.88         6.61         7.36         6.84         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1483 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       54.61        87.06        29.39        22.39        70.82        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 
       52.44        73.55        38.17        49.22        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       38.37        13.97        32.84         4.21         4.41         4.77 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2061 TCGA-13-2065 
        2.56         3.88         3.09        14.24        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
        6.28        23.05        25.94        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       19.07        16.67         2.66        47.54        42.51        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 TCGA-23-1118 
       51.35        54.51        31.20        68.68        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-2077 TCGA-23-2078 
      129.96         4.27        39.09        33.47       115.89        87.48 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 
       19.63        11.64        21.80        41.56        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        7.86         0.76         6.25         5.95         5.36         4.80 
TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       28.34        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 
       45.14       105.99         9.11         3.42         1.18        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1560 TCGA-24-1562 
       41.39        58.09        88.50        70.62        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 
       48.33        38.24         8.32         3.48         3.72         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       16.41        11.05        81.11        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 
       14.43        18.48        28.18        64.01        57.07        36.16 
TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 TCGA-24-2290 
        0.36        31.63        70.45        44.58        67.36        36.23 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       16.64        55.86        53.26        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1322 
       37.02         1.02        34.98        65.00        33.96         2.99 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1630 TCGA-25-1631 
        2.96        18.58        18.02        15.78         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 
       56.94        60.59        35.54        51.22        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       45.01        19.99         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 
       78.87        44.71        47.18       101.75        38.53        33.70 
TCGA-29-1697 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1711 
       31.17        16.90        18.64        59.67        18.25        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       17.00        85.68        66.77        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 
       22.98        24.36        22.52        17.29        11.84        12.30 
TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        8.35         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2431 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1857 
       42.25         9.76        38.07        51.91         2.47         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 
       48.07        44.91        34.78        36.62        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2588 
       20.98        18.31         6.05        16.14        11.47         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.56         7.46         7.63        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2350 
        1.74        22.32        28.96        25.05        25.02        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 
      116.12         9.40        34.39         2.14         5.39        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 
        8.05        20.94        31.40        18.54        27.88        31.76 
TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1900 
       48.79        35.80         2.43        33.67         1.41         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 
       11.41        13.02        34.13        37.02        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       14.50        17.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96        45.40         4.80        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2109 TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 
       58.39        60.62        20.68       125.72        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 
        6.35        31.07 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.36              0.26 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           180.16            129.96 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            18.84             30.05 
[1] "0.4 - 180.2 (18.8)" "0.3 - 130.0 (30.1)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
[1] "hr=" "1.2"
D13V2, continuous
D13V3, multiclass
                    clus
vv                   7P GAIN MUTATED 7P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          121               429
  PERITONEUM (OVARY)               0                 2
D13V4, continuous
D13V5, multiclass
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  I                 5                11
  II                8                18
  III              93               332
  IV               15                67
D13V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      0  121
  7P GAIN WILD-TYPE    3  430
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                0                 3
  YES             121               430
D13V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     93   28
  7P GAIN WILD-TYPE  357   76
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO               93               357
  YES              28                76

Clustering(14) Variable = 7q gain mutation analysis
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    64  76
  7Q GAIN WILD-TYPE 199 209
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              140               408 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               76               209 
$`7Q GAIN MUTATED`
TCGA-04-1337 TCGA-04-1342 TCGA-04-1347 TCGA-04-1351 TCGA-04-1364 TCGA-04-1514 
        2.01        18.51        63.06        65.46        33.67        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1542 TCGA-04-1646 TCGA-04-1649 TCGA-04-1652 
       41.59        19.99        84.20        27.88        64.64        31.86 
TCGA-04-1655 TCGA-09-0365 TCGA-09-1661 TCGA-09-1665 TCGA-09-1672 TCGA-09-1674 
       45.34         9.47        38.43        41.59         5.85         8.55 
TCGA-09-2043 TCGA-09-2045 TCGA-10-0926 TCGA-10-0927 TCGA-13-0717 TCGA-13-0724 
        6.15        35.15        25.91        81.47        24.59         2.73 
TCGA-13-0757 TCGA-13-0760 TCGA-13-0762 TCGA-13-0795 TCGA-13-0803 TCGA-13-0805 
       11.18        11.54        32.25        19.56        43.82        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0888 TCGA-13-0899 TCGA-13-0901 
       13.61        68.91        91.40        70.39        56.15        19.36 
TCGA-13-0904 TCGA-13-0921 TCGA-13-1407 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
       48.33         4.64         6.05         4.70         4.21         5.33 
TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1496 TCGA-13-1504 TCGA-13-1509 
       61.71        98.04        20.68         4.24        16.57         4.14 
TCGA-13-2059 TCGA-13-2060 TCGA-20-0991 TCGA-20-1686 TCGA-23-1021 TCGA-23-1024 
       12.23         8.58        26.20         2.93        47.54        15.39 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1111 TCGA-23-1121 TCGA-23-1809 TCGA-23-2072 
       18.87         2.24         3.22         6.38         0.53        24.95 
TCGA-23-2079 TCGA-24-1104 TCGA-24-1424 TCGA-24-1428 TCGA-24-1431 TCGA-24-1436 
       91.66        63.55         6.02        17.36        19.17         8.55 
TCGA-24-1474 TCGA-24-1546 TCGA-24-1548 TCGA-24-1557 TCGA-24-1558 TCGA-24-1844 
       22.19        64.27        16.21        39.88        19.53         3.72 
TCGA-24-1845 TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 TCGA-24-2030 TCGA-24-2033 
        3.81         4.87       151.99        34.82        53.95        18.48 
TCGA-24-2038 TCGA-24-2261 TCGA-24-2267 TCGA-24-2295 TCGA-25-1312 TCGA-25-1314 
       44.48         0.79        47.54        33.11         1.02        31.99 
TCGA-25-1320 TCGA-25-1323 TCGA-25-1623 TCGA-25-1627 TCGA-25-1628 TCGA-25-1870 
       36.95        12.00        18.58         0.36        20.58        14.93 
TCGA-25-1871 TCGA-25-1878 TCGA-25-2400 TCGA-25-2401 TCGA-29-1695 TCGA-29-1699 
       24.99        85.05        42.02         2.96         0.79         0.53 
TCGA-29-1707 TCGA-29-1764 TCGA-29-1775 TCGA-29-1778 TCGA-29-1783 TCGA-29-2428 
       41.95        62.93        12.36        14.93         7.20        45.11 
TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 TCGA-30-1853 TCGA-30-1862 TCGA-30-1866 
        4.87        11.84        11.47        36.26         6.08        36.62 
TCGA-30-1867 TCGA-31-1944 TCGA-36-2529 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
        1.18        45.57        35.05        18.31        20.52        14.17 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2590 TCGA-57-1586 TCGA-59-2348 TCGA-59-2349 
       14.30         9.07         7.46        22.32       180.16        80.12 
TCGA-59-2351 TCGA-59-2372 TCGA-61-1725 TCGA-61-1730 TCGA-61-1734 TCGA-61-1737 
      116.12        44.78        31.40         4.34        28.47        44.84 
TCGA-61-1743 TCGA-61-1899 TCGA-61-1901 TCGA-61-1904 TCGA-61-1911 TCGA-61-2003 
       43.69         8.42        11.41         9.07        42.48         3.98 
TCGA-61-2088 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 
        4.77        65.49        55.50         6.48        76.83        44.52 
TCGA-61-2113 TCGA-61-2614 
       22.22         8.58 

$`7Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00         1.81        49.15        46.62        11.87 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 
       65.49        48.76        21.57        63.98        49.28        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1525 TCGA-04-1530 
       44.32        76.54        71.47        82.36        38.37       119.08 
TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1651 TCGA-04-1654 
       29.06        55.40        48.89        28.64        36.23        47.70 
TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 
       29.16        57.73        17.95        35.54         9.96        89.33 
TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       74.89        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        3.02        97.55         6.12         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 
       35.80        15.12        19.86         6.21        44.55        39.58 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.38        34.06        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       36.72        28.70        30.35         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0804 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 
        8.28         8.19        35.28       107.18        74.27        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 
       61.81        67.99        69.01        43.36        57.47        57.07 
TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 
       34.06        29.98        21.14        14.89        13.81         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 
        6.08        10.88         6.61         7.36         5.92         6.84 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1483 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       54.61        87.06        29.39        22.39        70.82        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 
       52.44        73.55        38.17        49.22        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       38.37        13.97        32.84         4.21         4.41         4.77 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2061 TCGA-13-2065 
        2.56         3.88         3.09        14.24        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
        6.28        23.05        25.94        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 
       19.07        16.67         2.66        42.51        40.54        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1109 TCGA-23-1110 
       31.73        49.41         8.81        29.10        51.35        54.51 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       31.20        68.68         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2077 TCGA-23-2078 
        4.27        39.09        33.47        58.13       115.89        87.48 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       54.08        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        7.86         0.76         6.25         5.95         5.36         4.80 
TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       28.34        18.67        43.53        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 
      105.99         9.11         3.42         1.18        26.96        57.37 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       56.58        41.06        51.91        41.39        58.09        88.50 
TCGA-24-1556 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       70.62        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       17.23        90.15        88.34        48.33        38.24         8.32 
TCGA-24-1843 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.48         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2023 
       22.65        30.21        16.41        11.05        81.11        44.84 
TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 
       58.16       109.68        14.43        28.18        64.01        57.07 
TCGA-24-2260 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
       36.16         0.36        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 
       67.36        36.23        16.64        55.86        53.26        26.93 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 
       51.06        37.02         1.02        34.98        65.00        33.96 
TCGA-25-1322 TCGA-25-1329 TCGA-25-1625 TCGA-25-1626 TCGA-25-1630 TCGA-25-1631 
        2.99         2.96        18.02        15.78         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1877 TCGA-25-2042 
       56.94        60.59        35.54        51.22        18.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
       19.99        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
       47.18       101.75        38.53        33.70        31.17        68.28 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 
       16.90        18.64        59.67        18.25        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       17.00        85.68        66.77        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 
       24.36        22.52        17.29        11.84        12.30         8.35 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2431 
        5.36        34.62        86.17        65.00        62.47        42.25 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
        9.76        38.07        51.91         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
       48.07        44.91        34.78        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       48.79        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.55         8.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       24.69        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2549 TCGA-36-2551 
       23.80        21.60         2.24        20.98         6.05        16.14 
TCGA-36-2552 TCGA-42-2588 TCGA-42-2589 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
       11.47         9.44         7.56         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2350 
       21.14         1.74        28.96        25.05        25.02        22.32 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 
        9.40        34.39         2.14         5.39        11.11         8.05 
TCGA-61-1724 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1736 TCGA-61-1738 
       20.94        18.54        27.88        31.76        48.79        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1900 TCGA-61-1903 TCGA-61-1906 
        2.43        33.67         1.41         5.79        13.02        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       31.30        37.02        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       30.61        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.80        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2109 TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       20.68       125.72        51.91        15.88         6.35        31.07 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.36              0.26 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           180.16            129.96 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           20.255            29.440 
[1] "0.4 - 180.2 (20.3)" "0.3 - 130.0 (29.4)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, multiclass
                    clus
vv                   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          143               407
  PERITONEUM (OVARY)               1                 1
D14V4, continuous
D14V5, multiclass
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  I                 6                10
  II                8                18
  III             103               322
  IV               26                56
D14V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      0  144
  7Q GAIN WILD-TYPE    3  407
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                0                 3
  YES             144               407
D14V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED    110   34
  7Q GAIN WILD-TYPE  340   70
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO              110               340
  YES              34                70

Clustering(15) Variable = 8p gain mutation analysis
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    29  56
  8P GAIN WILD-TYPE 234 229
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               85               463 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               56               229 
$`8P GAIN MUTATED`
TCGA-04-1342 TCGA-04-1343 TCGA-04-1347 TCGA-04-1350 TCGA-04-1356 TCGA-04-1362 
       18.51        11.87        63.06        63.98        49.28        44.32 
TCGA-04-1364 TCGA-04-1542 TCGA-09-0365 TCGA-09-0369 TCGA-09-1659 TCGA-09-1665 
       33.67        84.20         9.47        35.54         9.96        41.59 
TCGA-09-1672 TCGA-09-2043 TCGA-10-0935 TCGA-10-0937 TCGA-13-0717 TCGA-13-0724 
        5.85         6.15        35.41        15.12        24.59         2.73 
TCGA-13-0726 TCGA-13-0751 TCGA-13-0755 TCGA-13-0760 TCGA-13-0800 TCGA-13-0884 
       31.07        55.17         2.47        11.54         8.12       107.18 
TCGA-13-0893 TCGA-13-0903 TCGA-13-0908 TCGA-13-1408 TCGA-13-1409 TCGA-13-1485 
       43.36        47.38        44.84         5.92         6.84        20.68 
TCGA-13-1488 TCGA-13-1497 TCGA-13-1506 TCGA-13-2057 TCGA-20-1683 TCGA-20-1685 
       70.82        54.31         4.41        14.24        25.38        16.67 
TCGA-20-1687 TCGA-23-1023 TCGA-23-1029 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
        2.66        40.54         8.81        51.35        54.51         3.22 
TCGA-23-2079 TCGA-24-1103 TCGA-24-1435 TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 
       91.66        54.08        43.53        58.09        70.62        39.88 
TCGA-24-2019 TCGA-24-2271 TCGA-25-1317 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
        4.87        31.63         1.02         2.96        18.58        18.02 
TCGA-25-1628 TCGA-25-1632 TCGA-25-1877 TCGA-25-2392 TCGA-25-2398 TCGA-25-2401 
       20.58        56.94        18.05         1.02        45.01         2.96 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1696 TCGA-29-1702 TCGA-29-1764 
       44.71        47.18       101.75        33.70        18.64        62.93 
TCGA-29-1776 TCGA-29-1785 TCGA-29-2431 TCGA-30-1714 TCGA-30-1853 TCGA-30-1861 
       11.84        34.62        42.25        38.07        36.26        34.78 
TCGA-30-1892 TCGA-31-1946 TCGA-36-1576 TCGA-36-2548 TCGA-57-1582 TCGA-59-2354 
       48.79        30.18        30.05        14.17        24.03        34.39 
TCGA-59-2355 TCGA-61-1743 TCGA-61-1906 TCGA-61-1918 TCGA-61-2009 TCGA-61-2111 
        2.14        43.69        34.13        15.75        39.85       125.72 
TCGA-61-2612 
        6.35 

$`8P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1361 TCGA-04-1365 
       65.49        48.76        21.57        65.46        32.52        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
      119.08        29.06        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 
       57.73        17.95        38.43        89.33        74.89        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 
       61.87        55.36        30.48        17.98         3.02         8.55 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       97.55         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0936 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 
        3.88        35.80        19.86         6.21        44.55        39.58 
TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 
       12.39        15.19        17.79        11.18        11.38        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
       28.70        30.35        19.56         8.71         7.79         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0904 
       69.01        57.47        56.15        57.07        19.36        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       47.84        44.94        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       21.14        14.89        13.81         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1410 TCGA-13-1411 
       10.88         6.61         7.36         6.05         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       22.39        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
        4.24        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.21         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       12.23         8.58        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1686 
       25.94        26.20        72.20        27.48        19.07         2.93 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       47.54        42.51        15.39        26.83        31.73        49.41 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
       29.10        18.87         2.24        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 
       33.30        86.01       129.96         4.27         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       33.47        58.13         0.53        24.95       115.89        87.48 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1436 
        4.80        17.36        28.34        19.17        18.67         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
        1.18        22.19        26.96        57.37        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1558 
       56.58        41.06        51.91        41.39        88.50        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 
       36.16         0.79         0.36        47.54        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       53.26         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 
       15.78         0.36         7.86         0.30        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       51.22        14.93        24.99        85.05        13.02        49.05 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2404 
       38.04         3.02        12.00        19.99        42.02        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1694 TCGA-29-1695 TCGA-29-1697 
       30.97        26.96        78.87        38.53         0.79        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       68.28         0.53        16.90        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 
       29.23        34.62        17.00        85.68        66.77        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       31.23        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-2414 
       12.30        14.93         8.35         7.20         5.36        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 
       65.00        62.47        45.11         4.87        11.84        11.47 
TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
        9.76        51.91         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       44.91         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-31-1944 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       30.05        45.57        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
       22.55         8.55        25.74        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
        6.05        16.14        11.47        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.56         7.46         7.63        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
       22.32       116.12         9.40         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       33.67         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
        9.07        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       67.73        43.43        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
       17.98         3.98        30.61        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       58.39        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 
       20.68        44.52        22.22        51.91        15.88        31.07 
TCGA-61-2614 
        8.58 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             1.02              0.26 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           125.72            180.16 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            33.67             27.68 
[1] "1.0 - 125.7 (33.7)" "0.3 - 180.2 (27.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D15V2, continuous
D15V3, multiclass
                    clus
vv                   8P GAIN MUTATED 8P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           86               464
  PERITONEUM (OVARY)               0                 2
D15V4, continuous
D15V5, multiclass
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  I                 2                14
  II                4                22
  III              62               363
  IV               18                64
D15V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      1   85
  8P GAIN WILD-TYPE    2  466
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                1                 2
  YES              85               466
D15V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     67   19
  8P GAIN WILD-TYPE  383   85
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO               67               383
  YES              19                85

Clustering(16) Variable = 8q gain mutation analysis
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED    83 118
  8Q GAIN WILD-TYPE 180 167
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              201               347 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              118               167 
$`8Q GAIN MUTATED`
TCGA-04-1335 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 TCGA-04-1347 TCGA-04-1349 
        1.81        46.62        18.51        11.87        63.06        21.57 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1542 
       65.46        49.28        44.32        33.67        76.54        84.20 
TCGA-04-1646 TCGA-04-1652 TCGA-09-0365 TCGA-09-0369 TCGA-09-1659 TCGA-09-1665 
       27.88        31.86         9.47        35.54         9.96        41.59 
TCGA-09-1667 TCGA-09-1670 TCGA-09-1672 TCGA-09-2043 TCGA-10-0925 TCGA-10-0927 
       61.87        17.98         5.85         6.15        54.31        81.47 
TCGA-10-0933 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 
       11.70        35.41        35.80        15.12        19.86        24.59 
TCGA-13-0724 TCGA-13-0726 TCGA-13-0751 TCGA-13-0755 TCGA-13-0760 TCGA-13-0761 
        2.73        31.07        55.17         2.47        11.54        34.06 
TCGA-13-0792 TCGA-13-0800 TCGA-13-0802 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       36.72         8.12         8.19        13.61        68.91       107.18 
TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0911 
       67.99        43.36        57.47        57.07        47.38        27.68 
TCGA-13-0919 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1408 TCGA-13-1409 
       14.89         6.08        10.88         6.61         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1497 
        4.70         4.21        98.04        20.68        70.82        54.31 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-2060 
       13.97        32.84         4.21         4.41         4.77         8.58 
TCGA-20-0987 TCGA-20-0991 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       23.05        26.20        25.38        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1029 TCGA-23-1031 TCGA-23-1109 
       42.51        40.54        26.83         8.81        18.87        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1119 TCGA-23-1121 
       54.51         3.22         4.57        33.30       129.96         6.38 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2079 TCGA-23-2084 TCGA-23-2645 TCGA-24-0975 
       58.13        24.95        91.66        49.84         4.50        21.80 
TCGA-24-0979 TCGA-24-1103 TCGA-24-1105 TCGA-24-1419 TCGA-24-1423 TCGA-24-1435 
       41.56        54.08        47.41         7.86         6.25        43.53 
TCGA-24-1436 TCGA-24-1464 TCGA-24-1467 TCGA-24-1546 TCGA-24-1552 TCGA-24-1553 
        8.55        12.46       105.99        64.27        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 
       88.50        70.62        39.88        19.53        47.70        25.87 
TCGA-24-1847 TCGA-24-1924 TCGA-24-1927 TCGA-24-2019 TCGA-24-2020 TCGA-24-2027 
       11.28        30.21        16.41         4.87       151.99       109.68 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2262 TCGA-24-2271 TCGA-24-2290 TCGA-24-2295 
       18.48        28.18         0.36        31.63        36.23        33.11 
TCGA-25-1312 TCGA-25-1317 TCGA-25-1321 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
        1.02         1.02        33.96         2.96        18.58        18.02 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1632 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 
        0.36        20.58        56.94        18.05        85.05         1.02 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       45.01        19.99         2.96        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 
       38.53         0.79        33.70        68.28        16.90        18.64 
TCGA-29-1703 TCGA-29-1764 TCGA-29-1766 TCGA-29-1776 TCGA-29-1778 TCGA-29-1783 
       59.67        62.93        39.09        11.84        14.93         7.20 
TCGA-29-1785 TCGA-29-2427 TCGA-29-2431 TCGA-29-2432 TCGA-30-1714 TCGA-30-1853 
       34.62        62.47        42.25        11.84        38.07        36.26 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1861 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 
        0.26        48.07        34.78        24.26        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1956 TCGA-31-1959 TCGA-36-1569 
       30.18        18.77        22.45        44.09         2.17        29.06 
TCGA-36-1570 TCGA-36-1574 TCGA-36-1576 TCGA-36-1580 TCGA-36-2529 TCGA-36-2548 
       21.53        22.55        30.05        24.23        35.05        14.17 
TCGA-42-2588 TCGA-57-1582 TCGA-57-1585 TCGA-57-1586 TCGA-59-2348 TCGA-59-2354 
        9.44        24.03         1.74        22.32       180.16        34.39 
TCGA-59-2355 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1736 TCGA-61-1743 
        2.14        20.94        31.40        27.88        48.79        43.69 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1914 TCGA-61-1918 TCGA-61-1919 
       34.13        31.30        37.02        56.58        15.75        38.17 
TCGA-61-1998 TCGA-61-2009 TCGA-61-2016 TCGA-61-2088 TCGA-61-2109 TCGA-61-2111 
        5.52        39.85         1.18         4.77        20.68       125.72 
TCGA-61-2610 TCGA-61-2612 TCGA-61-2614 
       51.91         6.35         8.58 

$`8Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1346 TCGA-04-1348 
       40.24        41.00        49.15         2.01        65.49        48.76 
TCGA-04-1350 TCGA-04-1361 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       63.98        32.52        71.47        82.36        56.55        41.59 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 
       19.99        38.37       119.08        29.06        55.40        48.89 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       28.64        64.64        36.23        47.70        45.34        29.16 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 
       57.73        17.95        38.43        89.33        74.89        57.57 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 
       55.36        30.48         3.02         8.55        97.55         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0926 TCGA-10-0928 TCGA-10-0930 
       20.91        26.93        12.46        25.91        18.48        33.24 
TCGA-10-0931 TCGA-10-0934 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 
       32.28         3.88         6.21        44.55        39.58        12.39 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0758 TCGA-13-0762 TCGA-13-0764 
       15.19        17.79        11.18        11.38        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
       21.40         8.42        38.93        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.71         7.79         8.28        43.82        35.28        35.28 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0891 
       91.40        74.27        66.64        70.39        61.81        69.01 
TCGA-13-0899 TCGA-13-0901 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       56.15        19.36        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 TCGA-13-0921 
       37.08        34.06        29.98        21.14        13.81         4.64 
TCGA-13-0923 TCGA-13-1405 TCGA-13-1407 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.41         7.36         6.05         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       61.71        29.39        22.39        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1504 
       38.17        49.22         4.24        37.61        38.37        16.57 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 
        4.14         2.56         3.88         3.09        14.24        12.23 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 TCGA-20-0996 TCGA-20-1682 
       10.78         8.75         6.28        25.94        72.20        27.48 
TCGA-20-1684 TCGA-23-1021 TCGA-23-1024 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 
       19.07        47.54        15.39        31.73        49.41        29.10 
TCGA-23-1032 TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1120 TCGA-23-1122 
        2.24        31.20        68.68        86.01         4.27        39.09 
TCGA-23-1123 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 
       33.47         0.53       115.89        87.48        77.00         2.76 
TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0980 TCGA-24-0982 
        4.70         7.63        19.63        11.64         7.66        22.32 
TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 
       63.55         6.31         6.38         7.82         7.99         0.76 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        6.02         5.95         5.36         4.80        17.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1463 TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 
       19.17        18.67        72.92        45.14         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1548 TCGA-24-1549 
        1.18        22.19        26.96        57.37        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1560 TCGA-24-1562 TCGA-24-1565 TCGA-24-1567 
       41.06        51.91        44.09        45.50        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         3.81         4.37         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1928 TCGA-24-1930 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       22.65        11.05        81.11        44.84        58.16        34.82 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       14.43        53.95        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
        0.79        47.54        70.45        44.58         0.82        67.36 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       16.64        55.86        53.26        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 
       37.02        34.98        65.00        36.95         2.99        12.00 
TCGA-25-1626 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
       15.78         7.86         0.30        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 
       14.93        24.99        13.02        49.05        38.04         3.02 
TCGA-25-2397 TCGA-25-2400 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       12.00        42.02        29.00        30.97        26.96        78.87 
TCGA-29-1697 TCGA-29-1699 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       31.17         0.53        18.25        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       17.00        85.68        66.77        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 
       22.52        17.29        12.36        12.30         8.35         5.36 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2434 TCGA-29-2436 
       86.17        65.00        45.11         4.87        11.47         9.76 
TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 
       51.91         2.47        15.68        44.91         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-31-1953 TCGA-31-1955 TCGA-36-1568 
        1.18        57.57        30.05         6.71        42.51        28.73 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2530 
       22.85         8.55        25.74        27.85        24.69        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 TCGA-36-2551 
        2.24        20.98        18.31        20.52         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       11.47        14.30         9.07         7.56         7.46         7.63 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 
       11.38        21.14        28.96        25.05        25.02        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
       22.32       116.12         9.40         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1737 
        8.05        18.54         4.34        31.76        28.47        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
       35.80         2.43        33.67         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1911 TCGA-61-1913 TCGA-61-1915 
       11.41        13.02         9.07        42.48        48.92        67.73 
TCGA-61-1917 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
       43.43         1.97        14.50        17.98         3.98        30.61 
TCGA-61-2012 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 
       30.64        45.96        45.40         4.80        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2110 TCGA-61-2113 TCGA-61-2611 TCGA-61-2613 
       76.83        44.52        22.22        15.88        31.07 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.26              0.30 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           180.16            119.08 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            27.88             28.64 
[1] "0.3 - 180.2 (27.9)" "0.3 - 119.1 (28.6)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, multiclass
                    clus
vv                   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          200               350
  PERITONEUM (OVARY)               2                 0
D16V4, continuous
D16V5, multiclass
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  I                 3                13
  II                7                19
  III             157               268
  IV               35                47
D16V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      1  202
  8Q GAIN WILD-TYPE    2  349
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO                1                 2
  YES             202               349
D16V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED    156   47
  8Q GAIN WILD-TYPE  294   57
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO              156               294
  YES              47                57

Clustering(17) Variable = 9p gain mutation analysis
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    27  31
  9P GAIN WILD-TYPE 236 254
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               58               490 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               31               254 
$`9P GAIN MUTATED`
TCGA-04-1516 TCGA-09-1668 TCGA-09-2045 TCGA-09-2051 TCGA-10-0933 TCGA-10-0935 
       41.59        55.36        35.15        63.09        11.70        35.41 
TCGA-10-0936 TCGA-13-0723 TCGA-13-0751 TCGA-13-0807 TCGA-13-0884 TCGA-13-0893 
       35.80        39.58        55.17        13.61       107.18        43.36 
TCGA-13-0911 TCGA-13-0923 TCGA-13-1488 TCGA-13-1505 TCGA-13-1507 TCGA-13-1511 
       27.68         6.41        70.82         4.21         4.77         3.88 
TCGA-20-0990 TCGA-20-1683 TCGA-20-1686 TCGA-23-1024 TCGA-23-1026 TCGA-23-1032 
       25.94        25.38         2.93        15.39        26.83         2.24 
TCGA-23-1121 TCGA-23-1809 TCGA-23-2077 TCGA-23-2084 TCGA-24-1424 TCGA-24-1428 
        6.38         0.53       115.89        49.84         6.02        17.36 
TCGA-24-1436 TCGA-24-1466 TCGA-24-1469 TCGA-24-1544 TCGA-24-1553 TCGA-24-1556 
        8.55        45.14         9.11        26.96        58.09        70.62 
TCGA-24-1614 TCGA-24-1842 TCGA-24-1847 TCGA-24-1850 TCGA-24-1924 TCGA-24-2026 
       48.33         8.32        11.28         5.49        30.21        34.82 
TCGA-24-2298 TCGA-25-1319 TCGA-25-1329 TCGA-25-1628 TCGA-25-1878 TCGA-25-2396 
       53.26        65.00         2.96        20.58        85.05         3.02 
TCGA-25-2404 TCGA-29-1762 TCGA-29-1763 TCGA-30-1859 TCGA-30-1862 TCGA-36-2532 
       29.00        85.68        66.77        48.07         6.08        29.49 
TCGA-61-1741 TCGA-61-1895 TCGA-61-2087 TCGA-61-2111 
       33.67         1.41         4.80       125.72 

$`9P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        82.36        56.55        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       29.16         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 
        6.15         6.12         4.50       112.37        71.11        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0937 TCGA-10-0938 
       18.48        33.24        32.28         3.88        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
        6.21        24.59        44.55         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       15.19        17.79         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
       68.91        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       67.99        69.01        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1489 
       61.71        29.39        98.04        20.68        22.39        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       52.44        73.55        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 
       37.61        38.37        13.97        32.84        16.57         4.41 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        4.14         2.56         3.09        14.24        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 
       10.78         8.75         6.28        23.05        26.20        72.20 
TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       27.48        19.07        16.67         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       40.54        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
       51.35        54.51         3.22        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 
       33.30        86.01       129.96         4.27        39.09        33.47 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 
       58.13        24.95        87.48        91.66        77.00         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 
        6.25         5.95         5.36         4.80        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1470 
       18.67        43.53        72.92        12.46       105.99         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        1.18        22.19        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 
       41.06        51.91        41.39        88.50        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       90.15        88.34        38.24         3.48         3.72         3.81 
TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 
        4.37         5.75         9.80        22.65        16.41        11.05 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       81.11         4.87       151.99        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       33.11        55.86         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
       37.02         1.02        34.98        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 
       12.00        18.58        18.02        15.78         0.36         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       24.99        18.05        13.02        49.05         1.02        38.04 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 
       12.00        45.01        19.99        42.02         2.96        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       26.96        78.87        44.71        47.18       101.75        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
        0.79        33.70        31.17        68.28         0.53        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       18.64        59.67        18.25        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       17.00        62.93        39.09        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
        9.76        38.07        51.91        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
        0.26        44.91        34.78        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       29.06        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       25.74        27.85        24.23        24.69        35.05        33.01 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       11.47        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.63        24.03        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
        2.43        43.69         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        9.07        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2088 TCGA-61-2092 
       30.64         1.18        45.96        45.40         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2610 
        6.48        76.83        20.68        44.52        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.53              0.26 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           125.72            180.16 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            28.34             28.26 
[1] "0.5 - 125.7 (28.3)" "0.3 - 180.2 (28.3)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D17V2, continuous
D17V3, multiclass
                    clus
vv                   9P GAIN MUTATED 9P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           59               491
  PERITONEUM (OVARY)               0                 2
D17V4, continuous
D17V5, multiclass
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  I                 2                14
  II                3                23
  III              42               383
  IV               11                71
D17V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      0   59
  9P GAIN WILD-TYPE    3  492
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                0                 3
  YES              59               492
D17V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     50    9
  9P GAIN WILD-TYPE  400   95
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO               50               400
  YES               9                95

Clustering(18) Variable = 9q gain mutation analysis
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    13  13
  9Q GAIN WILD-TYPE 250 272
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               26               522 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               13               272 
$`9Q GAIN MUTATED`
TCGA-04-1516 TCGA-09-1668 TCGA-13-0723 TCGA-13-0893 TCGA-13-0911 TCGA-13-1505 
       41.59        55.36        39.58        43.36        27.68         4.21 
TCGA-20-1683 TCGA-23-1809 TCGA-23-2084 TCGA-24-1466 TCGA-24-1552 TCGA-24-1614 
       25.38         0.53        49.84        45.14        41.39        48.33 
TCGA-24-1842 TCGA-24-1847 TCGA-24-1850 TCGA-25-1329 TCGA-25-1628 TCGA-25-1635 
        8.32        11.28         5.49         2.96        20.58        51.22 
TCGA-25-1878 TCGA-25-2404 TCGA-29-1762 TCGA-30-1862 TCGA-36-2542 TCGA-42-2591 
       85.05        29.00        85.68         6.08        21.60         7.63 
TCGA-61-1907 TCGA-61-2008 
       31.30        30.61 

$`9Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        82.36        56.55        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       29.16         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        6.15         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       24.59        44.55         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       17.79        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 
       70.39        61.81        67.99        69.01        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       57.07        19.36        47.38        48.33        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       44.84        37.08        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       13.81         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        7.36         6.05         5.92         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       20.68        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       13.97        32.84        16.57         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        2.56         3.88         3.09        14.24        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       72.20        27.48        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       47.54        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       54.51         3.22        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       58.13        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        0.76         6.25         6.02         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
       17.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       72.92        12.46       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       41.06        51.91        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 
       17.23        90.15        88.34        38.24         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
        3.81         4.37         5.75         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       16.41        11.05        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 
       18.58        18.02        15.78         0.36         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
       56.94        60.59        35.54        14.93        24.99        18.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 
       45.01        19.99        42.02         2.96        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       66.77        62.93        39.09        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
        9.76        38.07        51.91        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 
        0.26        48.07        44.91        34.78        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       30.05        25.74        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
        2.24        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
       16.14        11.47        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.46        24.03        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 
       11.41        13.02         9.07        34.13        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       48.92        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 
        1.97         5.52        14.50        17.98         3.98        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88         6.35        31.07         8.58 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.53              0.26 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
            85.68            180.16 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           29.805            28.030 
[1] "0.5 - 85.7 (29.8)"  "0.3 - 180.2 (28.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D18V2, continuous
D18V3, multiclass
                    clus
vv                   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           26               524
  PERITONEUM (OVARY)               0                 2
D18V4, continuous
[1] "Remove cluster labels:" "9Q GAIN MUTATED"       
clus
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                2                74 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1351        TCGA-04-1356 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1367        TCGA-10-0925        TCGA-10-0926        TCGA-13-0714 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0720        TCGA-13-0724        TCGA-13-0755        TCGA-13-0757 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0758        TCGA-13-0760        TCGA-13-0762        TCGA-13-0764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0768        TCGA-13-0791        TCGA-13-0792        TCGA-13-0793 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0794        TCGA-13-0795        TCGA-13-0797        TCGA-13-0799 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0801        TCGA-13-0802        TCGA-13-0885        TCGA-13-0887 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0888        TCGA-13-0889        TCGA-13-0891        TCGA-13-0897 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0910        TCGA-13-0912 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0913        TCGA-13-0919        TCGA-13-1404        TCGA-13-1405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1409        TCGA-13-1410        TCGA-13-1412        TCGA-13-1482 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1483        TCGA-13-1484        TCGA-13-1485        TCGA-13-1488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1489        TCGA-13-1491        TCGA-13-1492        TCGA-13-1495 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1506        TCGA-13-1507 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1509        TCGA-13-1511        TCGA-13-1512        TCGA-13-2057 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-2059        TCGA-13-2060        TCGA-13-2061        TCGA-13-2071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1930        TCGA-61-2101 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
D18V5, multiclass
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  I                 1                15
  II                2                24
  III              18               407
  IV                5                77
D18V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0   26
  9Q GAIN WILD-TYPE    3  525
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                0                 3
  YES              26               525
D18V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     21    5
  9Q GAIN WILD-TYPE  429   99
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO               21               429
  YES               5                99

Clustering(19) Variable = 10p gain mutation analysis
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    59  73
  10P GAIN WILD-TYPE 204 212
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               132                416 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                73                212 
$`10P GAIN MUTATED`
TCGA-04-1332 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 
       41.00        46.62        11.87        65.49        63.06        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1542 TCGA-04-1646 TCGA-04-1655 TCGA-09-0365 
       63.98        49.28        84.20        27.88        45.34         9.47 
TCGA-09-1661 TCGA-09-1668 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-2050 
       38.43        55.36         5.85         3.02         8.55        71.11 
TCGA-09-2051 TCGA-10-0933 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 
       63.09        11.70        15.19        17.79        55.17        11.18 
TCGA-13-0802 TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0888 TCGA-13-0890 
        8.19        13.61       107.18        91.40        70.39        67.99 
TCGA-13-0901 TCGA-13-1407 TCGA-13-1409 TCGA-13-1412 TCGA-13-1477 TCGA-13-1492 
       19.36         6.05         6.84         5.33        54.61        73.55 
TCGA-13-1496 TCGA-13-1499 TCGA-13-2060 TCGA-13-2061 TCGA-20-0987 TCGA-20-1683 
        4.24        38.37         8.58        10.78        23.05        25.38 
TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1031 
       16.67         2.93        47.54        42.51        15.39        18.87 
TCGA-23-1110 TCGA-23-1116 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2077 
       54.51         4.57        39.09        33.47        58.13       115.89 
TCGA-23-2643 TCGA-24-1417 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1436 
        4.70         7.82         6.02         4.80        17.36         8.55 
TCGA-24-1469 TCGA-24-1544 TCGA-24-1548 TCGA-24-1557 TCGA-24-1564 TCGA-24-1565 
        9.11        26.96        16.21        39.88        25.87        10.26 
TCGA-24-1616 TCGA-24-1843 TCGA-24-1928 TCGA-24-2260 TCGA-24-2261 TCGA-25-1312 
       38.24         3.48        11.05        36.16         0.79         1.02 
TCGA-25-1317 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 
        1.02        36.95        33.96         2.99         2.96        18.58 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1634 TCGA-25-1635 TCGA-25-1871 
        0.36        20.58         0.30        35.54        51.22        24.99 
TCGA-25-1877 TCGA-25-2398 TCGA-29-1691 TCGA-29-1693 TCGA-29-1701 TCGA-29-1702 
       18.05        45.01        47.18       101.75        16.90        18.64 
TCGA-29-1766 TCGA-29-1775 TCGA-29-1778 TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 
       39.09        12.36        14.93         7.20        34.62        86.17 
TCGA-29-2425 TCGA-29-2428 TCGA-29-2432 TCGA-30-1856 TCGA-30-1861 TCGA-30-1887 
       65.00        45.11        11.84        15.68        34.78        24.26 
TCGA-31-1950 TCGA-31-1953 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       18.77         6.71        27.85        24.23        24.69        35.05 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2588 TCGA-57-1582 TCGA-57-1583 
       14.17        16.14        11.47         9.44        24.03        11.38 
TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2352 TCGA-59-2372 
       22.32        25.05        25.02       180.16         9.40        44.78 
TCGA-61-1730 TCGA-61-1741 TCGA-61-1907 TCGA-61-1911 TCGA-61-1917 TCGA-61-1918 
        4.34        33.67        31.30        42.48        43.43        15.75 
TCGA-61-1919 TCGA-61-2003 TCGA-61-2018 TCGA-61-2098 TCGA-61-2101 TCGA-61-2612 
       38.17         3.98        45.40        65.49        55.50         6.35 

$`10P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1348 
       40.24         1.81        49.15         2.01        18.51        48.76 
TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       65.46        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       29.06        55.40        48.89        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       31.86        47.70        29.16        57.73        17.95        35.54 
TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
        9.96        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
       30.48        17.98        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
        4.50       112.37        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
        2.47        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 
       19.56         8.71         7.79         8.12         8.28        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 
       35.28        35.28        68.91        74.27        66.64        61.81 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 
       69.01        43.36        57.47        56.15        57.07        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 
        6.41         6.08        10.88         6.61         7.36         5.92 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        4.70         4.21        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 
       20.68        22.39        70.82        82.88        52.44        38.17 
TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       49.22        54.31        37.61        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
        4.21         4.41         4.77         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 
        3.09        14.24        12.23         8.75         6.28        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1687 TCGA-23-1023 
       26.20        72.20        27.48        19.07         2.66        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1032 
       26.83        31.73        49.41         8.81        29.10         2.24 
TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 TCGA-23-1118 
       51.35         3.22        31.20        68.68        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1809 TCGA-23-2072 TCGA-23-2078 
      129.96         4.27         6.38         0.53        24.95        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 
       91.66        77.00        49.84         2.76         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 
       54.08        63.55        47.41         6.31         6.38         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1430 
        7.86         0.76         6.25         5.95         5.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       19.17        18.67        43.53        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 
      105.99         3.42         1.18        22.19        57.37        64.27 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       56.58        41.06        51.91        41.39        58.09        88.50 
TCGA-24-1556 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 
       70.62        19.53        44.09        45.50        47.70        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 
       90.15        88.34        48.33         8.32         3.72         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       30.21        16.41        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2262 TCGA-24-2267 
       28.18        64.01        44.48        57.07         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       31.63        70.45        44.58         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 
       16.64        33.11        55.86        53.26        26.93        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1323 TCGA-25-1625 
       51.06        37.02        34.98        65.00        12.00        18.02 
TCGA-25-1626 TCGA-25-1630 TCGA-25-1632 TCGA-25-1633 TCGA-25-1870 TCGA-25-1878 
       15.78         7.86        56.94        60.59        14.93        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       78.87        44.71        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       68.28         0.53        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1768 
       34.62        17.00        85.68        66.77        62.93        31.23 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 
       22.98        24.36        22.52        17.29        11.84        12.30 
TCGA-29-1781 TCGA-29-1784 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 
        8.35         5.36        62.47         4.87        42.25        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 
        9.76        38.07        51.91        36.26         2.47         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       48.07        44.91         6.08        36.62         1.18        57.57 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1955 
       30.05        48.79        45.57        30.18        22.45        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-2530 TCGA-36-2532 
       22.55         8.55        30.05        25.74        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 TCGA-42-2582 TCGA-42-2587 
       20.98        18.31        20.52         6.05        14.30         9.07 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 
        7.56         7.46         7.63        21.14         1.74        28.96 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       80.12        22.32       116.12        34.39         2.14         5.39 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
        9.07        34.13        37.02        48.92        56.58        67.73 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 
        1.97         5.52        14.50        17.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
       30.64         1.18        45.96         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2102 TCGA-61-2104 
       71.74        61.64        58.39        60.62         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       20.68        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.30               0.26 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            180.16             151.99 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             23.54              29.31 
[1] "0.3 - 180.2 (23.5)" "0.3 - 152.0 (29.3)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D19V2, continuous
D19V3, multiclass
                    clus
vv                   10P GAIN MUTATED 10P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           131                419
  PERITONEUM (OVARY)                2                  0
D19V4, continuous
D19V5, multiclass
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  I                  3                 13
  II                 5                 21
  III              107                318
  IV                17                 65
D19V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      0  133
  10P GAIN WILD-TYPE    3  418
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 0                  3
  YES              133                418
D19V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED    102   31
  10P GAIN WILD-TYPE  348   73
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO               102                348
  YES               31                 73

Clustering(20) Variable = 10q gain mutation analysis
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED    29  39
  10Q GAIN WILD-TYPE 234 246
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                68                480 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                39                246 
$`10Q GAIN MUTATED`
TCGA-04-1332 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1542 TCGA-04-1646 
       41.00        21.57        63.98        49.28        84.20        27.88 
TCGA-04-1655 TCGA-09-0365 TCGA-09-1661 TCGA-09-1668 TCGA-09-1672 TCGA-09-1674 
       45.34         9.47        38.43        55.36         5.85         8.55 
TCGA-09-2055 TCGA-10-0933 TCGA-13-0727 TCGA-13-0730 TCGA-13-0802 TCGA-13-0884 
       26.93        11.70        15.19        17.79         8.19       107.18 
TCGA-13-0885 TCGA-13-0901 TCGA-13-1477 TCGA-13-1484 TCGA-13-1496 TCGA-13-2061 
       91.40        19.36        54.61        98.04         4.24        10.78 
TCGA-20-1685 TCGA-23-1021 TCGA-23-1022 TCGA-23-1110 TCGA-23-1123 TCGA-23-1124 
       16.67        47.54        42.51        54.51        33.47        58.13 
TCGA-23-2077 TCGA-23-2643 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1548 
      115.89         4.70         6.02         4.80        17.36        16.21 
TCGA-24-1564 TCGA-24-1616 TCGA-24-2261 TCGA-25-1312 TCGA-25-1317 TCGA-25-1321 
       25.87        38.24         0.79         1.02         1.02        33.96 
TCGA-25-1623 TCGA-25-1634 TCGA-25-1877 TCGA-29-1702 TCGA-29-1783 TCGA-29-2425 
       18.58        35.54        18.05        18.64         7.20        65.00 
TCGA-29-2428 TCGA-29-2432 TCGA-31-1950 TCGA-36-1578 TCGA-36-1580 TCGA-36-2529 
       45.11        11.84        18.77        27.85        24.23        35.05 
TCGA-36-2548 TCGA-36-2552 TCGA-57-1582 TCGA-57-1583 TCGA-57-1994 TCGA-59-2352 
       14.17        11.47        24.03        11.38        25.02         9.40 
TCGA-61-1730 TCGA-61-1907 TCGA-61-1915 TCGA-61-1919 TCGA-61-2003 TCGA-61-2098 
        4.34        31.30        67.73        38.17         3.98        65.49 
TCGA-61-2101 TCGA-61-2612 
       55.50         6.35 

$`10Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24         1.81        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1351 TCGA-04-1361 
       11.87        65.49        63.06        48.76        65.46        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       44.32        33.67        76.54        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 
       41.59        19.99        38.37       119.08        29.06        55.40 
TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       48.89        28.64        64.64        36.23        31.86        47.70 
TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 
       29.16        57.73        17.95        35.54         9.96        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 
       74.89        41.59        57.57        61.87        30.48        17.98 
TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        3.02        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2056 
      112.37        71.11        63.09        39.75        20.91        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.28        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       74.27        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 
       43.36        57.47        56.15        57.07        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       29.98        21.14        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 TCGA-13-1482 
        6.84         4.70         4.21         5.33        87.06        61.71 
TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       29.39        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       73.55        38.17        49.22        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 
        4.14         2.56         3.88         3.09        14.24        12.23 
TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
        8.58         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 
       72.20        27.48        25.38        19.07         2.93         2.66 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 
       29.10        18.87         2.24        51.35         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1809 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 
        6.38        39.09         0.53        24.95        87.48        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       77.00        49.84         2.76         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1430 
        7.86         0.76         6.25         5.95         5.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       19.17        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       26.96        57.37        64.27        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       44.09        45.50        47.70        10.26        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       88.34        48.33         8.32         3.48         3.72         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       30.21        16.41        11.05        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 
       26.93        31.99        51.06        37.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1625 TCGA-25-1626 
       36.95         2.99        12.00         2.96        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       51.22        14.93        24.99        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       44.71        47.18       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 
       31.17        68.28         0.53        16.90        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       17.29        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 
        5.36        34.62        86.17        62.47         4.87        42.25 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       11.47         9.76        38.07        51.91        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       45.57        30.18        22.45         6.71        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 
        2.17        28.73        29.06        21.53        22.85        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 
        8.55        30.05        25.74        24.69        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 
       20.98        18.31        20.52         6.05        16.14        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1584 
        9.07         9.44         7.56         7.46         7.63        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-59-2348 TCGA-59-2349 
        1.74        22.32        28.96        25.05       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
       22.32       116.12        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       13.02         9.07        34.13        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       56.58        43.43        15.75         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
       17.98        30.61        39.85        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       58.39        60.62         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22        51.91        15.88        31.07         8.58 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.79               0.26 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            115.89             180.16 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             24.13              28.98 
[1] "0.8 - 115.9 (24.1)" "0.3 - 180.2 (29.0)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D20V2, continuous
D20V3, multiclass
                    clus
vv                   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            68                482
  PERITONEUM (OVARY)                1                  1
D20V4, continuous
D20V5, multiclass
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  I                  3                 13
  II                 3                 23
  III               56                369
  IV                 6                 76
D20V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      0   69
  10Q GAIN WILD-TYPE    3  482
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 0                  3
  YES               69                482
D20V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED     49   20
  10Q GAIN WILD-TYPE  401   84
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                49                401
  YES               20                 84

Clustering(21) Variable = 11p gain mutation analysis
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    21  19
  11P GAIN WILD-TYPE 242 266
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                40                508 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                19                266 
$`11P GAIN MUTATED`
TCGA-04-1343 TCGA-04-1346 TCGA-04-1350 TCGA-09-2043 TCGA-10-0931 TCGA-13-0724 
       11.87        65.49        63.98         6.15        32.28         2.73 
TCGA-13-0727 TCGA-13-0797 TCGA-13-1407 TCGA-13-1410 TCGA-13-1497 TCGA-13-2057 
       15.19         8.71         6.05         4.70        54.31        14.24 
TCGA-23-1021 TCGA-23-1024 TCGA-23-1026 TCGA-23-1029 TCGA-23-1030 TCGA-23-1109 
       47.54        15.39        26.83         8.81        29.10        51.35 
TCGA-23-1111 TCGA-23-2084 TCGA-23-2645 TCGA-24-1551 TCGA-24-1556 TCGA-24-1604 
        3.22        49.84         4.50        51.91        70.62        88.34 
TCGA-24-2030 TCGA-25-1312 TCGA-25-1321 TCGA-25-1877 TCGA-29-1701 TCGA-29-1775 
       53.95         1.02        33.96        18.05        16.90        12.36 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1862 TCGA-36-1574 TCGA-36-1578 TCGA-42-2587 
        0.26        48.07         6.08        22.55        27.85         9.07 
TCGA-59-2348 TCGA-61-1907 TCGA-61-1915 TCGA-61-2097 
      180.16        31.30        67.73        60.62 

$`11P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 
       18.51        63.06        48.76        21.57        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       32.52        44.32        33.67        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 
       17.98         5.85         3.02         8.55        97.55         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       18.48        33.24        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       15.12        19.86         6.21        24.59        44.55        39.58 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       12.39        31.07        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       11.38        11.54        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       57.47        56.15        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       29.98        21.14        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 
        6.08        10.88         6.61         7.36         5.92         6.84 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 
       73.55        38.17        49.22         4.24        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 
        4.14         2.56         3.88         3.09        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       72.20        27.48        25.38        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1027 TCGA-23-1028 TCGA-23-1031 
        2.66        42.51        40.54        31.73        49.41        18.87 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
        2.24        54.51        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 
       58.13         0.53        24.95       115.89        87.48        91.66 
TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       77.00         2.76         4.70         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        0.76         6.25         6.02         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
       17.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
        1.18        22.19        26.96        57.37        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 
       56.58        41.06        41.39        58.09        88.50        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       17.23        90.15        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       14.43        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       55.86        53.26        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 
        1.02        34.98        65.00        36.95         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
        7.86         0.30        56.94        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       14.93        24.99        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       68.28         0.53        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       11.84        12.30        14.93         8.35         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 
       36.26         2.47        15.68        44.91        34.78        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
        1.18        57.57        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       30.18        18.77        22.45         6.71        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 
        2.17        28.73        29.06        21.53        22.85         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       30.05        25.74        24.23        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
        2.24        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       16.14        11.47        14.30         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.63        24.03        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       28.96        25.05        25.02        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       13.02         9.07        34.13        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       56.58        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       71.74        61.64        58.39        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.26               0.30 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            180.16             151.99 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            24.690             28.555 
[1] "0.3 - 180.2 (24.7)" "0.3 - 152.0 (28.6)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D21V2, continuous
D21V3, multiclass
                    clus
vv                   11P GAIN MUTATED 11P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            40                510
  PERITONEUM (OVARY)                0                  2
D21V4, continuous
D21V5, multiclass
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  I                  1                 15
  II                 3                 23
  III               25                400
  IV                10                 72
D21V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      0   40
  11P GAIN WILD-TYPE    3  511
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 0                  3
  YES               40                511
D21V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     27   13
  11P GAIN WILD-TYPE  423   91
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                27                423
  YES               13                 91

Clustering(22) Variable = 11q gain mutation analysis
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    27  33
  11Q GAIN WILD-TYPE 236 252
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                60                488 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                33                252 
$`11Q GAIN MUTATED`
TCGA-04-1343 TCGA-04-1346 TCGA-04-1350 TCGA-04-1652 TCGA-09-1661 TCGA-09-1668 
       11.87        65.49        63.98        31.86        38.43        55.36 
TCGA-10-0931 TCGA-13-0726 TCGA-13-0797 TCGA-13-0893 TCGA-13-0897 TCGA-13-1407 
       32.28        31.07         8.71        43.36        57.47         6.05 
TCGA-13-1410 TCGA-13-1412 TCGA-13-1497 TCGA-13-1506 TCGA-13-2057 TCGA-20-1685 
        4.70         5.33        54.31         4.41        14.24        16.67 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1029 TCGA-23-1030 
        2.66        47.54        42.51        15.39         8.81        29.10 
TCGA-23-1109 TCGA-23-1111 TCGA-23-2084 TCGA-23-2645 TCGA-24-1431 TCGA-24-1436 
       51.35         3.22        49.84         4.50        19.17         8.55 
TCGA-24-1551 TCGA-24-1556 TCGA-24-1558 TCGA-24-1563 TCGA-24-1604 TCGA-24-1616 
       51.91        70.62        19.53        47.70        88.34        38.24 
TCGA-24-1845 TCGA-24-2027 TCGA-24-2033 TCGA-25-1312 TCGA-25-1630 TCGA-25-1631 
        3.81       109.68        18.48         1.02         7.86         0.30 
TCGA-25-1877 TCGA-29-1701 TCGA-29-1702 TCGA-29-1783 TCGA-29-2425 TCGA-30-1856 
       18.05        16.90        18.64         7.20        65.00        15.68 
TCGA-30-1857 TCGA-30-1862 TCGA-36-1574 TCGA-36-1578 TCGA-42-2587 TCGA-57-1584 
        0.26         6.08        22.55        27.85         9.07        21.14 
TCGA-61-1907 TCGA-61-1915 TCGA-61-1918 TCGA-61-2097 TCGA-61-2109 TCGA-61-2612 
       31.30        67.73        15.75        60.62        20.68         6.35 

$`11Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 
       18.51        63.06        48.76        21.57        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       32.52        44.32        33.67        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       36.23        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       17.95        35.54         9.96        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       57.57        61.87        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0799 
       38.93        36.72        28.70        30.35        19.56         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0899 TCGA-13-0900 
       70.39        61.81        67.99        69.01        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       13.81         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 
        7.36         5.92         6.84         4.21        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       82.88        52.44        73.55        38.17        49.22         4.24 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 
        4.77         4.14         2.56         3.88         3.09        12.23 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
        8.58        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 
       26.20        72.20        27.48        25.38        19.07         2.93 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1031 TCGA-23-1032 
       40.54        26.83        31.73        49.41        18.87         2.24 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2641 TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        2.76         4.70         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       28.34        18.67        43.53        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 
       57.37        64.27        16.21        56.58        41.06        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1564 
       58.09        88.50        39.88        44.09        45.50        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 
       10.26        17.23        90.15        48.33         8.32         3.48 
TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 
      151.99        44.84        58.16        34.82        14.43        53.95 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1632 
       18.58        18.02        15.78         0.36        20.58        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 
       60.59        35.54        51.22        14.93        24.99        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       26.96        78.87        44.71        47.18       101.75        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1703 
        0.79        33.70        31.17        68.28         0.53        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       18.25        41.95        29.23        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       66.77        62.93        39.09        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 
        8.35         5.36        34.62        86.17        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
        4.87        42.25        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
       51.91        36.26         2.47        48.07        44.91        34.78 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
        8.55        30.05        25.74        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
        6.05        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 
        7.46         7.63        24.03        11.38         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 
       11.41        13.02         9.07        34.13        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       48.92        56.58        43.43        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       71.74        61.64        58.39        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       76.83        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.26               0.36 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            109.68             180.16 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            19.350             28.845 
[1] "0.3 - 109.7 (19.4)" "0.4 - 180.2 (28.8)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
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        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
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        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
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        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
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        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
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        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
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        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
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        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous
D22V3, multiclass
                    clus
vv                   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            60                490
  PERITONEUM (OVARY)                0                  2
D22V4, continuous
D22V5, multiclass
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  I                  0                 16
  II                 3                 23
  III               44                381
  IV                13                 69
D22V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      0   60
  11Q GAIN WILD-TYPE    3  491
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 0                  3
  YES               60                491
D22V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     45   15
  11Q GAIN WILD-TYPE  405   89
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                45                405
  YES               15                 89

Clustering(23) Variable = 12p gain mutation analysis
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    93 104
  12P GAIN WILD-TYPE 170 181
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               197                351 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               104                181 
$`12P GAIN MUTATED`
TCGA-04-1332 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1351 TCGA-04-1356 
       41.00        18.51        65.49        63.06        65.46        49.28 
TCGA-04-1362 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 
       44.32        82.36        41.59        19.99        38.37        29.06 
TCGA-04-1542 TCGA-04-1646 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       84.20        27.88        31.86        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1661 TCGA-09-1668 TCGA-09-1672 
       57.73        17.95        35.54        38.43        55.36         5.85 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-10-0926 
        8.55         6.15         4.50       112.37        63.09        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-13-0717 
       81.47        18.48        33.24        32.28        11.70        24.59 
TCGA-13-0723 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0760 TCGA-13-0762 
       39.58        15.19        17.79        11.18        11.54        32.25 
TCGA-13-0764 TCGA-13-0792 TCGA-13-0795 TCGA-13-0800 TCGA-13-0802 TCGA-13-0883 
       31.04        36.72        19.56         8.12         8.19        68.91 
TCGA-13-0884 TCGA-13-0888 TCGA-13-0899 TCGA-13-0901 TCGA-13-0906 TCGA-13-0912 
      107.18        70.39        56.15        19.36        44.94        34.06 
TCGA-13-0920 TCGA-13-0923 TCGA-13-1407 TCGA-13-1411 TCGA-13-1485 TCGA-13-1495 
       13.81         6.41         6.05         4.21        20.68        49.22 
TCGA-13-1496 TCGA-13-1499 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-2057 
        4.24        38.37        16.57         4.21         4.41        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-20-1682 TCGA-20-1686 TCGA-23-1021 TCGA-23-1024 
       12.23         8.58        27.48         2.93        47.54        15.39 
TCGA-23-1111 TCGA-23-1114 TCGA-23-1116 TCGA-23-1124 TCGA-23-1809 TCGA-23-2079 
        3.22        68.68         4.57        58.13         0.53        91.66 
TCGA-23-2643 TCGA-23-2645 TCGA-24-1418 TCGA-24-1422 TCGA-24-1424 TCGA-24-1427 
        4.70         4.50         7.99         0.76         6.02         4.80 
TCGA-24-1430 TCGA-24-1436 TCGA-24-1466 TCGA-24-1469 TCGA-24-1474 TCGA-24-1544 
       28.34         8.55        45.14         9.11        22.19        26.96 
TCGA-24-1545 TCGA-24-1548 TCGA-24-1553 TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 
       57.37        16.21        58.09        19.53        44.09        47.70 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1844 
       10.26        17.23        88.34        48.33        38.24         3.72 
TCGA-24-1845 TCGA-24-1850 TCGA-24-1920 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
        3.81         5.49         9.80        81.11         4.87       151.99 
TCGA-24-2033 TCGA-24-2038 TCGA-24-2260 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       18.48        44.48        36.16        44.58         0.82        67.36 
TCGA-24-2295 TCGA-25-1312 TCGA-25-1315 TCGA-25-1321 TCGA-25-1323 TCGA-25-1626 
       33.11         1.02        51.06        33.96        12.00        15.78 
TCGA-25-1627 TCGA-25-1630 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
        0.36         7.86        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       18.05        85.05        13.02         1.02        38.04         3.02 
TCGA-25-2398 TCGA-25-2400 TCGA-29-1690 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 
       45.01        42.02        44.71         0.79        68.28         0.53 
TCGA-29-1702 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 
       18.64        29.23        17.00        66.77        39.09        31.23 
TCGA-29-1769 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 
       22.98        17.29        12.36        12.30        14.93         7.20 
TCGA-29-1784 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2431 TCGA-30-1856 
        5.36        86.17        65.00        45.11        42.25        15.68 
TCGA-30-1859 TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 TCGA-31-1950 TCGA-31-1955 
       48.07         1.18        24.26        30.05        18.77        42.51 
TCGA-31-1959 TCGA-36-1569 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1580 
        2.17        29.06        22.85         8.55        30.05        24.23 
TCGA-36-2529 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-57-1583 TCGA-57-1586 
       35.05        14.17        16.14        11.47        11.38        22.32 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2351 TCGA-59-2352 TCGA-59-2363 
       25.05        25.02       180.16       116.12         9.40         5.39 
TCGA-59-2372 TCGA-61-1722 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1743 
       44.78         8.05        27.88         4.34        31.76        43.69 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1904 TCGA-61-1907 TCGA-61-1915 TCGA-61-2002 
        1.41         5.79         9.07        31.30        67.73        17.98 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2097 TCGA-61-2612 TCGA-61-2614 
       39.85        30.64        60.62         6.35         8.58 

$`12P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 
       40.24         1.81        49.15         2.01        46.62        11.87 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 
       48.76        21.57        63.98        32.52        33.67        76.54 
TCGA-04-1367 TCGA-04-1514 TCGA-04-1530 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
       71.47        56.55       119.08        55.40        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 
       64.64        36.23        47.70         9.96        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 
       41.59        57.57        61.87        30.48        17.98         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 
       97.55         6.12        35.15        71.11        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       26.93        12.46        54.31         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 
       15.12        19.86         6.21        44.55         2.73        12.39 
TCGA-13-0726 TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0761 TCGA-13-0766 
       31.07        55.17         2.47        11.38        34.06        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
        8.42        38.93        28.70        30.35         8.71         7.79 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0885 
        8.28        43.82        35.28        35.28        13.61        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       74.27        66.64        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 
       57.47        57.07        47.38        48.33        47.84        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 
       37.08        27.68        29.98        21.14        14.89         4.64 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 
        6.08        10.88         6.61         7.36         5.92         6.84 
TCGA-13-1410 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.70         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       98.04        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1501 TCGA-13-1507 
       38.17        54.31        37.61        13.97        32.84         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2061 TCGA-13-2065 
        4.14         2.56         3.88         3.09        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 
        6.28        23.05        25.94        26.20        72.20        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 
       19.07        16.67         2.66        42.51        40.54        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       51.35        54.51        31.20        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2077 
        4.27         6.38        39.09        33.47        24.95       115.89 
TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 
       87.48        77.00        49.84         2.76         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 
       63.55        47.41         6.31         6.38         7.82         7.86 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 
        6.25         5.95         5.36        17.36        19.17        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 
       43.53        72.92        12.46       105.99         3.42         1.18 
TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 
       64.27        56.58        41.06        51.91        41.39        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1562 TCGA-24-1564 TCGA-24-1603 TCGA-24-1842 
       70.62        39.88        45.50        25.87        90.15         8.32 
TCGA-24-1843 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1923 TCGA-24-1924 
        3.48         4.37        11.28         5.75        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
       16.41        11.05        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2261 
       14.43        53.95        28.18        64.01        57.07         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2290 TCGA-24-2293 
        0.36        47.54        31.63        70.45        36.23        16.64 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1316 TCGA-25-1317 
       55.86        53.26        26.93        31.99        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 
       34.98        65.00        36.95         2.99         2.96        18.58 
TCGA-25-1625 TCGA-25-1628 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-2391 
       18.02        20.58         0.30        56.94        60.59        49.05 
TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       12.00        19.99         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       78.87        47.18       101.75        38.53        33.70        31.17 
TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1762 
       16.90        59.67        18.25        41.95        34.62        85.68 
TCGA-29-1764 TCGA-29-1770 TCGA-29-1771 TCGA-29-1776 TCGA-29-1781 TCGA-29-1785 
       62.93        24.36        22.52        11.84         8.35        34.62 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
       62.47         4.87        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 
       51.91        36.26         2.47         0.26        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        6.08        36.62        57.57        48.79        45.57        30.18 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1956 TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 
       22.45         6.71        44.09        28.73        21.53        22.55 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       25.74        27.85        24.69        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
       18.31        20.52         6.05        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1585 
        7.56         7.46         7.63        24.03        21.14         1.74 
TCGA-57-1992 TCGA-59-2349 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 TCGA-61-1721 
       28.96        80.12        22.32        34.39         2.14        11.11 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       20.94        31.40        18.54        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 
       35.80         2.43        33.67         8.42        11.41        13.02 
TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 
       34.13        37.02        42.48        48.92        56.58        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 
       15.75        38.17         1.97         5.52        14.50         3.98 
TCGA-61-2008 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.61         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 
       51.72        71.74        61.64        58.39        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 
       51.91        15.88        31.07 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.36               0.26 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            180.16             129.96 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             24.26              29.79 
[1] "0.4 - 180.2 (24.3)" "0.3 - 130.0 (29.8)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
[1] "hr=" "1.1"
D23V2, continuous
D23V3, multiclass
                    clus
vv                   12P GAIN MUTATED 12P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           199                351
  PERITONEUM (OVARY)                2                  0
D23V4, continuous
D23V5, multiclass
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  I                  5                 11
  II                11                 15
  III              166                259
  IV                16                 66
D23V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      1  200
  12P GAIN WILD-TYPE    2  351
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 1                  2
  YES              200                351
D23V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED    154   47
  12P GAIN WILD-TYPE  296   57
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO               154                296
  YES               47                 57

Clustering(24) Variable = 12q gain mutation analysis
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    49  64
  12Q GAIN WILD-TYPE 214 221
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               113                435 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                64                221 
$`12Q GAIN MUTATED`
TCGA-04-1332 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1362 
       41.00         2.01        18.51        65.49        63.06        44.32 
TCGA-04-1525 TCGA-04-1646 TCGA-04-1652 TCGA-04-1655 TCGA-09-0365 TCGA-09-0366 
       38.37        27.88        31.86        45.34         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1668 TCGA-09-1672 TCGA-09-2048 TCGA-09-2049 
       17.95        35.54        55.36         5.85         4.50       112.37 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0936 TCGA-13-0717 TCGA-13-0723 
       25.91        81.47        33.24        35.80        24.59        39.58 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0795 TCGA-13-0800 TCGA-13-0804 TCGA-13-0884 
       15.19        17.79        19.56         8.12        35.28       107.18 
TCGA-13-0888 TCGA-13-0912 TCGA-13-0920 TCGA-13-1407 TCGA-13-1485 TCGA-13-1496 
       70.39        34.06        13.81         6.05        20.68         4.24 
TCGA-13-1506 TCGA-13-2057 TCGA-13-2060 TCGA-20-1686 TCGA-23-1021 TCGA-23-1111 
        4.41        14.24         8.58         2.93        47.54         3.22 
TCGA-23-1116 TCGA-23-1809 TCGA-23-2643 TCGA-24-1418 TCGA-24-1419 TCGA-24-1424 
        4.57         0.53         4.70         7.99         7.86         6.02 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1474 TCGA-24-1544 TCGA-24-1548 
       12.46        45.14         9.11        22.19        26.96        16.21 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 TCGA-24-1565 TCGA-24-1616 TCGA-24-1845 
       19.53        44.09        47.70        10.26        38.24         3.81 
TCGA-24-1850 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2038 TCGA-24-2260 
        5.49        81.11         4.87       151.99        44.48        36.16 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2295 TCGA-25-1312 TCGA-25-1321 TCGA-25-1634 
       44.58         0.82        33.11         1.02        33.96        35.54 
TCGA-25-1870 TCGA-25-1871 TCGA-25-2392 TCGA-25-2398 TCGA-29-1690 TCGA-29-1695 
       14.93        24.99         1.02        45.01        44.71         0.79 
TCGA-29-1761 TCGA-29-1763 TCGA-29-1768 TCGA-29-1774 TCGA-29-1778 TCGA-29-1783 
       17.00        66.77        31.23        17.29        14.93         7.20 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2431 TCGA-30-1856 TCGA-30-1859 
       86.17        65.00        45.11        42.25        15.68        48.07 
TCGA-30-1867 TCGA-31-1950 TCGA-31-1959 TCGA-36-1571 TCGA-36-1575 TCGA-36-2529 
        1.18        18.77         2.17        22.85         8.55        35.05 
TCGA-36-2548 TCGA-36-2551 TCGA-57-1583 TCGA-57-1586 TCGA-57-1993 TCGA-59-2348 
       14.17        16.14        11.38        22.32        25.05       180.16 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2372 TCGA-61-1730 TCGA-61-1907 TCGA-61-2009 
      116.12         9.40        44.78         4.34        31.30        39.85 
TCGA-61-2012 TCGA-61-2088 TCGA-61-2097 TCGA-61-2612 TCGA-61-2614 
       30.64         4.77        60.62         6.35         8.58 

$`12Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1348 
       40.24         1.81        49.15        46.62        11.87        48.76 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 
       21.57        63.98        65.46        49.28        32.52        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
      119.08        29.06        84.20        55.40        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-09-0364 TCGA-09-1659 TCGA-09-1661 
       64.64        36.23        47.70        29.16         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 
       89.33        74.89        41.59        57.57        61.87        30.48 
TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
       17.98         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
       35.15        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       12.46        54.31        18.48        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0724 
       35.41        15.12        19.86         6.21        44.55         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       12.39        31.07        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
       38.93        36.72        28.70        30.35         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.28         8.19        43.82        35.28        13.61        68.91 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       91.40        74.27        66.64        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       29.98        21.14        14.89         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
       10.88         6.61         7.36         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       98.04        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       38.17        49.22        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       32.84        16.57         4.21         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        3.88         3.09        12.23        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
       19.07        16.67         2.66        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 
        2.24        51.35        54.51        31.20        68.68        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       58.13        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       49.84         2.76         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1422 TCGA-24-1423 
       47.41         6.31         6.38         7.82         0.76         6.25 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1467 TCGA-24-1470 
       18.67        43.53         8.55        72.92       105.99         3.42 
TCGA-24-1471 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
        1.18        57.37        64.27        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1562 
       41.39        58.09        88.50        70.62        39.88        45.50 
TCGA-24-1564 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1842 
       25.87        17.23        90.15        88.34        48.33         8.32 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 
        3.48         3.72         4.37        11.28         5.75         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2023 TCGA-24-2024 
       22.65        30.21        16.41        11.05        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       64.01        57.07         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 
       70.45        67.36        36.23        16.64        55.86        53.26 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       65.00        36.95         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       56.94        60.59        51.22        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 
       49.05        38.04         3.02        12.00        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1691 
        2.96        29.00        30.97        26.96        78.87        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
      101.75        38.53        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 TCGA-29-1770 
       34.62        85.68        62.93        39.09        22.98        24.36 
TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 
       22.52        12.36        11.84        12.30         8.35         5.36 
TCGA-29-1785 TCGA-29-2427 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       34.62        62.47         4.87        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1860 
       38.07        51.91        36.26         2.47         0.26        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
       34.78         6.08        36.62        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       48.79        45.57        30.18        22.45         6.71        42.51 
TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1576 
       44.09        28.73        29.06        21.53        22.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 
       25.74        27.85        24.23        24.69        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 TCGA-36-2552 TCGA-42-2582 
       20.98        18.31        20.52         6.05        11.47        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
        9.07         9.44         7.56         7.46         7.63        24.03 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 
       21.14         1.74        28.96        25.02        80.12        22.32 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
       34.39         2.14         5.39        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       31.40        18.54        27.88        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       37.02        42.48        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
        3.98        30.61         1.18        45.96        45.40         4.80 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 
       51.72        71.74        61.64        58.39        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 
       51.91        15.88        31.07 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.53               0.26 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            180.16             129.96 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             22.32              29.06 
[1] "0.5 - 180.2 (22.3)" "0.3 - 130.0 (29.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
[1] "hr=" "1.2"
D24V2, continuous
D24V3, multiclass
                    clus
vv                   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           115                435
  PERITONEUM (OVARY)                1                  1
D24V4, continuous
D24V5, multiclass
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  I                  1                 15
  II                 6                 20
  III               97                328
  IV                10                 72
D24V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      1  115
  12Q GAIN WILD-TYPE    2  436
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 1                  2
  YES              115                436
D24V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     90   26
  12Q GAIN WILD-TYPE  360   78
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                90                360
  YES               26                 78

Clustering(25) Variable = 13q gain mutation analysis
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    18  20
  13Q GAIN WILD-TYPE 245 265
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                38                510 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                20                265 
$`13Q GAIN MUTATED`
TCGA-04-1337 TCGA-04-1351 TCGA-04-1371 TCGA-09-0364 TCGA-09-2049 TCGA-10-0933 
        2.01        65.46        82.36        29.16       112.37        11.70 
TCGA-10-0935 TCGA-13-0727 TCGA-13-0899 TCGA-13-0921 TCGA-13-1407 TCGA-23-1109 
       35.41        15.19        56.15         4.64         6.05        51.35 
TCGA-23-2072 TCGA-24-0970 TCGA-24-1418 TCGA-24-1422 TCGA-24-1467 TCGA-24-1930 
       24.95        11.64         7.99         0.76       105.99        81.11 
TCGA-25-1312 TCGA-25-1320 TCGA-25-1323 TCGA-25-1870 TCGA-29-1695 TCGA-29-1783 
        1.02        36.95        12.00        14.93         0.79         7.20 
TCGA-29-2425 TCGA-29-2428 TCGA-30-1714 TCGA-30-1718 TCGA-30-1880 TCGA-36-1576 
       65.00        45.11        38.07        51.91        57.57        30.05 
TCGA-42-2591 TCGA-57-1993 TCGA-61-1911 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        7.63        25.05        42.48         3.98        30.61        39.85 
TCGA-61-2098 TCGA-61-2102 
       65.49         6.48 

$`13Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81        49.15        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       49.28        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 TCGA-09-0366 
       36.23        31.86        47.70        45.34         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
       35.15         4.50        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
       26.93        12.46        54.31        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       33.24        32.28         3.88        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       31.07        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       57.47        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       21.14        14.89        13.81         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        6.61         7.36         5.92         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       20.68        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 
        4.14         2.56         3.88         3.09        14.24        12.23 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
        8.58        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
        2.93         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
        2.24        54.51         3.22        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 
       33.30        86.01       129.96         4.27         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 
       33.47        58.13         0.53       115.89        87.48        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       19.63        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 
       63.55        47.41         6.31         6.38         7.82         7.86 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       12.46        45.14         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       17.23        90.15        88.34        48.33        38.24         8.32 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        3.48         3.72         3.81         4.37        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 
        5.49         9.80        22.65        30.21        16.41        11.05 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       33.11        55.86        53.26        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1322 
       37.02         1.02        34.98        65.00        33.96         2.99 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
        7.86         0.30        56.94        60.59        35.54        51.22 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
       47.18       101.75        38.53        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 
       12.36        11.84        12.30        14.93         8.35         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       34.62        86.17        62.47         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       11.47         9.76        36.26         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1577 
       29.06        21.53        22.85        22.55         8.55        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       11.47        14.30         9.07         9.44         7.56         7.46 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 
        9.07        34.13        31.30        37.02        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       14.50        17.98        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2101 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       60.62        55.50        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88         6.35        31.07         8.58 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.76               0.26 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            112.37             180.16 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            29.605             28.030 
[1] "0.8 - 112.4 (29.6)" "0.3 - 180.2 (28.0)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
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        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
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        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
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        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
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        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
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        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
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        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
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        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
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        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
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        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
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        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
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        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
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        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
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        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
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        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
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        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
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        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
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        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
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        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
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        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
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        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
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        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
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        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
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        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D25V2, continuous
D25V3, multiclass
                    clus
vv                   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            38                512
  PERITONEUM (OVARY)                0                  2
D25V4, continuous
[1] "Remove cluster labels:" "13Q GAIN MUTATED"      
clus
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 2                 74 
        TCGA-04-1346         TCGA-04-1347         TCGA-04-1356 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1367         TCGA-10-0925         TCGA-10-0926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0714         TCGA-13-0720         TCGA-13-0724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0755         TCGA-13-0757         TCGA-13-0758 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0760         TCGA-13-0762         TCGA-13-0764 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0768         TCGA-13-0791         TCGA-13-0792 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0793         TCGA-13-0794         TCGA-13-0795 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0797         TCGA-13-0799         TCGA-13-0801 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0802         TCGA-13-0885         TCGA-13-0887 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0891 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0897         TCGA-13-0900         TCGA-13-0901 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0910         TCGA-13-0911 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0912         TCGA-13-0913         TCGA-13-0919 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1404         TCGA-13-1405         TCGA-13-1409 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1412         TCGA-13-1482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1488         TCGA-13-1489         TCGA-13-1491 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1492         TCGA-13-1495         TCGA-13-1497 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1506 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1507         TCGA-13-1509         TCGA-13-1511 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1512         TCGA-13-2057         TCGA-13-2059 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2060         TCGA-13-2061         TCGA-13-2071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1614         TCGA-61-2101 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
D25V5, multiclass
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  I                  0                 16
  II                 3                 23
  III               32                393
  IV                 3                 79
D25V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      1   37
  13Q GAIN WILD-TYPE    2  514
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 1                  2
  YES               37                514
D25V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     28   10
  13Q GAIN WILD-TYPE  422   94
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                28                422
  YES               10                 94

Clustering(26) Variable = 14q gain mutation analysis
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    16  17
  14Q GAIN WILD-TYPE 247 268
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                33                515 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                17                268 
$`14Q GAIN MUTATED`
TCGA-04-1514 TCGA-04-1646 TCGA-09-0364 TCGA-09-1669 TCGA-13-0762 TCGA-13-0768 
       56.55        27.88        29.16        30.48        32.25         8.42 
TCGA-13-0899 TCGA-13-0901 TCGA-13-2057 TCGA-13-2059 TCGA-23-1809 TCGA-24-1103 
       56.15        19.36        14.24        12.23         0.53        54.08 
TCGA-24-1545 TCGA-24-1555 TCGA-24-1842 TCGA-24-1844 TCGA-24-2030 TCGA-24-2261 
       57.37        88.50         8.32         3.72        53.95         0.79 
TCGA-25-1314 TCGA-25-1317 TCGA-25-2408 TCGA-29-1702 TCGA-29-2428 TCGA-30-1714 
       31.99         1.02        30.97        18.64        45.11        38.07 
TCGA-31-1959 TCGA-36-1570 TCGA-36-2544 TCGA-36-2548 TCGA-57-1583 TCGA-59-2352 
        2.17        21.53        20.98        14.17        11.38         9.40 
TCGA-61-1730 TCGA-61-2097 TCGA-61-2612 
        4.34        60.62         6.35 

$`14Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        82.36        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
      119.08        29.06        84.20        55.40        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 
       64.64        36.23        31.86        47.70        45.34         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 
       74.89        41.59        57.57        61.87        55.36        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.80        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       31.04        21.40        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 
       69.01        43.36        57.47        57.07        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       29.98        21.14        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       82.88        52.44        73.55        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
        4.21         4.41         4.77         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
        3.09         8.58        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       25.94        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
        6.38        39.09        33.47        58.13        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
        7.66        22.32        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       18.67        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       58.09        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
       48.33        38.24         3.48         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
       34.82       109.68        14.43        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.48        57.07        36.16         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 
       33.11        55.86        53.26         1.02        26.93        51.06 
TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
       37.02        34.98        65.00        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       20.58         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 TCGA-29-1688 
       19.99        42.02         2.96        29.00        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       44.71        47.18       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 
       31.17        68.28         0.53        16.90        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       17.29        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 
        4.87        42.25        11.84        11.47         9.76        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1571 
        6.71        42.51        44.09        28.73        29.06        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.55         8.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-36-2547 
       25.08        23.80        21.60         2.24        18.31        20.52 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
        6.05        16.14        11.47        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1585 
        7.56         7.46         7.63        24.03        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
       22.32       116.12        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       13.02         9.07        34.13        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       48.92        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
        1.97         5.52        14.50        17.98         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 
        4.77        51.72        71.74        61.64        58.39        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88        31.07         8.58 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.53               0.26 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             88.50             180.16 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             20.98              28.64 
[1] "0.5 - 88.5 (21.0)"  "0.3 - 180.2 (28.6)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
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        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
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        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
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        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
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        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
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        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
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        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
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        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
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        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
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        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
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        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
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        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
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        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
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        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
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        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
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        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
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        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
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        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
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        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
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        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
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        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
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        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
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        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
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        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
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        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
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        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
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        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
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        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
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        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
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        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
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        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
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        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
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        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
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        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
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        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
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        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
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        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
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        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
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        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
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        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
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        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
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        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
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        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
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        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
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        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
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        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D26V2, continuous
D26V3, multiclass
                    clus
vv                   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            33                517
  PERITONEUM (OVARY)                0                  2
D26V4, continuous
D26V5, multiclass
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  I                  1                 15
  II                 3                 23
  III               25                400
  IV                 4                 78
D26V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      1   32
  14Q GAIN WILD-TYPE    2  519
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 1                  2
  YES               32                519
D26V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     28    5
  14Q GAIN WILD-TYPE  422   99
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                28                422
  YES                5                 99

Clustering(27) Variable = 15q gain mutation analysis
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED    11  12
  15Q GAIN WILD-TYPE 252 273
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                23                525 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                12                273 
$`15Q GAIN MUTATED`
TCGA-04-1349 TCGA-04-1356 TCGA-04-1361 TCGA-10-0938 TCGA-13-0761 TCGA-13-0792 
       21.57        49.28        32.52        19.86        34.06        36.72 
TCGA-13-2065 TCGA-23-1021 TCGA-23-2072 TCGA-23-2079 TCGA-24-1551 TCGA-24-1558 
        8.75        47.54        24.95        91.66        51.91        19.53 
TCGA-24-2289 TCGA-25-1627 TCGA-36-1571 TCGA-36-2542 TCGA-42-2587 TCGA-57-1582 
       67.36         0.36        22.85        21.60         9.07        24.03 
TCGA-61-1730 TCGA-61-1907 TCGA-61-1915 TCGA-61-2009 TCGA-61-2097 
        4.34        31.30        67.73        39.85        60.62 

$`15Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       18.51        11.87        65.49        63.06        48.76        63.98 
TCGA-04-1351 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       65.46        44.32        33.67        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.41        35.80        15.12         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0762 
       55.17         2.47        11.18        11.38        11.54        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 
       31.04        21.40         8.42        38.93        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        6.05         5.92         6.84         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       22.39        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        2.56         3.88         3.09        14.24        12.23         8.58 
TCGA-13-2061 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
       10.78         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
        0.53       115.89        87.48        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       41.06        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       70.45        44.58         0.82        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       20.58         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       65.00        62.47        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       11.47         9.76        38.07        51.91        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 
       44.09         2.17        28.73        29.06        21.53        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
        8.55        30.05        25.74        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       23.80         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
        6.05        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.46         7.63        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       13.02         9.07        34.13        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       56.58        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 
       14.50        17.98         3.98        30.61        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       61.64        58.39        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       20.68        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.36               0.26 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             91.66             180.16 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             31.30              28.18 
[1] "0.4 - 91.7 (31.3)"  "0.3 - 180.2 (28.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
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        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
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        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
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        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
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        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
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        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
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        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
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        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
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        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
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        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
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        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
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        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
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        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
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        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
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        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
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        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
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        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
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        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
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        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
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        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
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        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
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        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
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        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
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        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
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        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
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        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
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        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
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        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
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        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
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        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
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        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
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        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
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        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
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        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
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        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
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        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
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        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
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        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
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        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
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        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
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        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
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        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
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        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
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        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
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        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
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        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
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        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
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        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
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"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
D27V3, multiclass
                    clus
vv                   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            24                526
  PERITONEUM (OVARY)                0                  2
D27V4, continuous
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 2                 74 
        TCGA-04-1346         TCGA-04-1347         TCGA-04-1351 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1367         TCGA-10-0925         TCGA-10-0926 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0714         TCGA-13-0720         TCGA-13-0724 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0755         TCGA-13-0757         TCGA-13-0758 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0760         TCGA-13-0762         TCGA-13-0764 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0768         TCGA-13-0791         TCGA-13-0793 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0794         TCGA-13-0795         TCGA-13-0797 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0799         TCGA-13-0801         TCGA-13-0802 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0887         TCGA-13-0888 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0889         TCGA-13-0891         TCGA-13-0897 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0900         TCGA-13-0901         TCGA-13-0903 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0904         TCGA-13-0905         TCGA-13-0906 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0910         TCGA-13-0911         TCGA-13-0912 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0913         TCGA-13-0919         TCGA-13-1404 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1405         TCGA-13-1409         TCGA-13-1410 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1412         TCGA-13-1482         TCGA-13-1483 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1484         TCGA-13-1485         TCGA-13-1488 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1489         TCGA-13-1491         TCGA-13-1492 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1497         TCGA-13-1498 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1499         TCGA-13-1500         TCGA-13-1501 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1504         TCGA-13-1506         TCGA-13-1507 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1509         TCGA-13-1511         TCGA-13-1512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2071         TCGA-24-1614 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1930         TCGA-61-2101 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
D27V5, multiclass
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  I                  2                 14
  II                 3                 23
  III               14                411
  IV                 5                 77
D27V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      0   24
  15Q GAIN WILD-TYPE    3  527
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 0                  3
  YES               24                527
D27V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     18    6
  15Q GAIN WILD-TYPE  432   98
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                18                432
  YES                6                 98

Clustering(28) Variable = 16p gain mutation analysis
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    16  15
  16P GAIN WILD-TYPE 247 270
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                31                517 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                15                270 
$`16P GAIN MUTATED`
TCGA-04-1351 TCGA-04-1371 TCGA-04-1542 TCGA-04-1646 TCGA-04-1648 TCGA-04-1655 
       65.46        82.36        84.20        27.88        28.64        45.34 
TCGA-09-0364 TCGA-09-1672 TCGA-10-0936 TCGA-13-0724 TCGA-13-0889 TCGA-13-0901 
       29.16         5.85        35.80         2.73        61.81        19.36 
TCGA-13-2059 TCGA-23-1021 TCGA-23-1124 TCGA-23-1809 TCGA-24-1604 TCGA-24-1842 
       12.23        47.54        58.13         0.53        88.34         8.32 
TCGA-24-1845 TCGA-25-1871 TCGA-25-1877 TCGA-29-1774 TCGA-29-1784 TCGA-29-2432 
        3.81        24.99        18.05        17.29         5.36        11.84 
TCGA-31-1959 TCGA-36-2547 TCGA-36-2552 TCGA-59-2372 TCGA-61-1915 TCGA-61-2009 
        2.17        20.52        11.47        44.78        67.73        39.85 
TCGA-61-2101 
       55.50 

$`16P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       63.98        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       71.47        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 
       29.06        55.40        48.89        64.64        36.23        31.86 
TCGA-04-1654 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       47.70         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       55.36        30.48        17.98         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        6.15         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
        3.88        35.41        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       44.55        39.58        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        6.05         5.92         6.84         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       22.39        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
        2.56         3.88         3.09        14.24         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 
      129.96         4.27         6.38        39.09        33.47        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       39.88        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 
       10.26        17.23        90.15        48.33        38.24         3.48 
TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       35.54        51.22        14.93        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       44.71        47.18       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
       31.17        68.28         0.53        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       18.25        41.95        29.23        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       66.77        62.93        39.09        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       22.52        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        7.20        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
        4.87        42.25        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
        6.71        42.51        44.09        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 
       18.31        14.17         6.05        16.14        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        2.14         5.39        11.11         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       18.54        27.88         4.34        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 
       31.30        37.02        42.48        48.92        56.58        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
        3.98        30.61        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       60.62        65.49         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
      125.72        22.22        51.91        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.53               0.26 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             88.34             180.16 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             27.88              28.34 
[1] "0.5 - 88.3 (27.9)"  "0.3 - 180.2 (28.3)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D28V2, continuous
D28V3, multiclass
                    clus
vv                   16P GAIN MUTATED 16P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            32                518
  PERITONEUM (OVARY)                0                  2
D28V4, continuous
D28V5, multiclass
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  I                  0                 16
  II                 4                 22
  III               24                401
  IV                 4                 78
D28V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      0   32
  16P GAIN WILD-TYPE    3  519
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 0                  3
  YES               32                519
D28V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     28    4
  16P GAIN WILD-TYPE  422  100
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                28                422
  YES                4                100

Clustering(29) Variable = 16q gain mutation analysis
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED     8   7
  16Q GAIN WILD-TYPE 255 278
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                15                533 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 7                278 
$`16Q GAIN MUTATED`
TCGA-04-1542 TCGA-04-1646 TCGA-04-1648 TCGA-09-0364 TCGA-09-1672 TCGA-13-1510 
       84.20        27.88        28.64        29.16         5.85         2.56 
TCGA-13-2059 TCGA-23-1021 TCGA-24-1604 TCGA-24-1845 TCGA-29-1774 TCGA-36-2538 
       12.23        47.54        88.34         3.81        17.29        25.08 
TCGA-36-2547 TCGA-59-2372 TCGA-61-1915 
       20.52        44.78        67.73 

$`16Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 
       38.37       119.08        29.06        55.40        48.89        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 TCGA-09-0366 
       36.23        31.86        47.70        45.34         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        3.02         8.55        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
       26.93        12.46        54.31        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       33.24        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       15.12        19.86         6.21        24.59        44.55        39.58 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
        2.73        12.39        31.07        15.19        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
        2.47        11.18        11.38        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       30.35        19.56         8.71         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       13.81         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        7.36         6.05         5.92         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       20.68        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
        4.14         3.88         3.09        14.24         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        4.80        17.36        28.34        19.17        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
        8.55        72.92        12.46        45.14       105.99         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        3.42         1.18        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       16.21        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 
       47.70        25.87        10.26        17.23        90.15        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 
       38.24         8.32         3.48         3.72         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        5.36        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
        4.87        42.25        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       51.91        36.26         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       29.06        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       25.74        27.85        24.23        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.49        29.79        25.91        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       20.98        18.31        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.30         9.07         9.44         7.56         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 
        9.40        34.39         2.14         5.39        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        9.07        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       56.58        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       51.91        15.88         6.35        31.07         8.58 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              2.56               0.26 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             88.34             180.16 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             27.88              28.34 
[1] "2.6 - 88.3 (27.9)"  "0.3 - 180.2 (28.3)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
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        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
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        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
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        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
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        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
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        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
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        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
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        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
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        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
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        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
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        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
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        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
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        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
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        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
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        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
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        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
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        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
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        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
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        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
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        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
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        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
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        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
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        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
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        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
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        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
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        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
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        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
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        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
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        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
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        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
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        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
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        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
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        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
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        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
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        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
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        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
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        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
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        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
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        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
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        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
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        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
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        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
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        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
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        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
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        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
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        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
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        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
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        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
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        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
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        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
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        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
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        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
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        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
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        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
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        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
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        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
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        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
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        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
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"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D29V2, continuous
D29V3, multiclass
                    clus
vv                   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            16                534
  PERITONEUM (OVARY)                0                  2
D29V4, continuous
[1] "Remove cluster labels:" "16Q GAIN MUTATED"      
clus
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 1                 75 
        TCGA-04-1346         TCGA-04-1347         TCGA-04-1351 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1356         TCGA-04-1367         TCGA-10-0925 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0926         TCGA-13-0714         TCGA-13-0720 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0724         TCGA-13-0755         TCGA-13-0757 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0758         TCGA-13-0760         TCGA-13-0762 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0764         TCGA-13-0768         TCGA-13-0791 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0801         TCGA-13-0802         TCGA-13-0885 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0887         TCGA-13-0888         TCGA-13-0889 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0897         TCGA-13-0900 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0901         TCGA-13-0903         TCGA-13-0904 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0905         TCGA-13-0906         TCGA-13-0910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0919         TCGA-13-1404         TCGA-13-1405 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1409         TCGA-13-1410         TCGA-13-1412 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1482         TCGA-13-1483         TCGA-13-1484 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1485         TCGA-13-1488         TCGA-13-1489 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1495 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1497         TCGA-13-1498         TCGA-13-1499 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1500         TCGA-13-1501         TCGA-13-1504 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1511         TCGA-13-1512         TCGA-13-2057 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-2060         TCGA-13-2061         TCGA-13-2071 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1614         TCGA-24-1930         TCGA-61-2101 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
D29V5, multiclass
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  I                  0                 16
  II                 2                 24
  III               13                412
  IV                 1                 81
D29V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      0   16
  16Q GAIN WILD-TYPE    3  535
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 0                  3
  YES               16                535
D29V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     14    2
  16Q GAIN WILD-TYPE  436  102
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                14                436
  YES                2                102

Clustering(30) Variable = 17p gain mutation analysis
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED     9   1
  17P GAIN WILD-TYPE 254 284
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                10                538 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 1                284 
$`17P GAIN MUTATED`
TCGA-09-2051 TCGA-13-0800 TCGA-13-0920 TCGA-13-1412 TCGA-13-2057 TCGA-13-2060 
       63.09         8.12        13.81         5.33        14.24         8.58 
TCGA-20-1683 TCGA-23-1114 TCGA-36-1578 TCGA-61-1900 
       25.38        68.68        27.85         5.79 

$`17P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       38.37       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       27.88        28.64        64.64        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       45.34        29.16         9.47        57.73        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
      112.37        71.11        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       31.07        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       11.38        11.54        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        8.71         7.79         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       57.47        56.15        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       29.98        21.14        14.89         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       10.88         6.61         7.36         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.70         4.21        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 
        4.77         4.14         2.56         3.88         3.09        12.23 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       72.20        27.48        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       47.54        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        4.80        17.36        28.34        19.17        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
        8.55        72.92        12.46        45.14       105.99         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        3.42         1.18        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       16.21        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       48.33        38.24         8.32         3.48         3.72         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       30.21        16.41        11.05        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       53.26         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
        1.02        34.98        65.00        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       20.58         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       65.00        62.47        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       11.47         9.76        38.07        51.91        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       22.55         8.55        30.05        25.74        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       14.17         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       31.40        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        1.41         8.42        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       31.30        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       17.98         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              5.33               0.26 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             68.68             180.16 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            14.025             28.670 
[1] "5.3 - 68.7 (14.0)"  "0.3 - 180.2 (28.7)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "3.7"
D30V2, continuous
D30V3, multiclass
                    clus
vv                   17P GAIN MUTATED 17P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            10                540
  PERITONEUM (OVARY)                0                  2
D30V4, continuous
D30V5, multiclass
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  I                  0                 16
  II                 0                 26
  III                7                418
  IV                 3                 79
D30V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      0   10
  17P GAIN WILD-TYPE    3  541
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 0                  3
  YES               10                541
D30V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     10    0
  17P GAIN WILD-TYPE  440  104
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                10                440
  YES                0                104

Clustering(31) Variable = 17q gain mutation analysis
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    16   6
  17Q GAIN WILD-TYPE 247 279
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                22                526 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 6                279 
$`17Q GAIN MUTATED`
TCGA-04-1337 TCGA-09-2051 TCGA-10-0936 TCGA-13-0800 TCGA-13-0897 TCGA-13-0920 
        2.01        63.09        35.80         8.12        57.47        13.81 
TCGA-13-1408 TCGA-13-1412 TCGA-13-1477 TCGA-13-1483 TCGA-13-1489 TCGA-13-2057 
        5.92         5.33        54.61        29.39        82.88        14.24 
TCGA-13-2060 TCGA-23-1114 TCGA-24-1845 TCGA-25-1319 TCGA-36-1570 TCGA-36-1574 
        8.58        68.68         3.81        65.00        21.53        22.55 
TCGA-36-1578 TCGA-61-1737 TCGA-61-1900 TCGA-61-1914 
       27.85        44.84         5.79        56.58 

$`17Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81        49.15        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       29.16         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 
       55.36        30.48        17.98         5.85         3.02         8.55 
TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
       97.55         6.15         6.12        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       71.11        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
        3.88        35.41        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       44.55        39.58         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       17.79        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 TCGA-13-0900 
       61.81        67.99        69.01        43.36        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1481 TCGA-13-1482 
        6.05         6.84         4.70         4.21        87.06        61.71 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       98.04        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 
        4.14         2.56         3.88         3.09        12.23        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       47.54        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        4.80        17.36        28.34        19.17        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
        8.55        72.92        12.46        45.14       105.99         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        3.42         1.18        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       16.21        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 
       48.33        38.24         8.32         3.48         3.72         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       16.41        11.05        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       34.98        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       17.29        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       45.11         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       38.07        51.91        36.26         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       28.73        29.06        22.85         8.55        30.05        25.74 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       18.31        20.52        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.30         9.07         9.44         7.56         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       31.76        28.47        48.79        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
       43.69         1.41         8.42        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1915 
       34.13        31.30        37.02        42.48        48.92        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       17.98         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              2.01               0.26 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             82.88             180.16 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            25.200             28.405 
[1] "2.0 - 82.9 (25.2)"  "0.3 - 180.2 (28.4)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
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        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
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        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
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        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
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        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
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        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
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        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
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        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
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        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
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        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
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        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
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        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
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        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
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        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
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        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "2"  
D31V2, continuous
D31V3, multiclass
                    clus
vv                   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            23                527
  PERITONEUM (OVARY)                0                  2
D31V4, continuous
D31V5, multiclass
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  I                  0                 16
  II                 0                 26
  III               17                408
  IV                 5                 77
D31V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      0   23
  17Q GAIN WILD-TYPE    3  528
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 0                  3
  YES               23                528
D31V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     21    2
  17Q GAIN WILD-TYPE  429  102
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                21                429
  YES                2                102

Clustering(32) Variable = 18p gain mutation analysis
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    41  34
  18P GAIN WILD-TYPE 222 251
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                75                473 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                34                251 
$`18P GAIN MUTATED`
TCGA-04-1347 TCGA-04-1361 TCGA-04-1371 TCGA-04-1516 TCGA-04-1525 TCGA-04-1542 
       63.06        32.52        82.36        41.59        38.37        84.20 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1652 TCGA-09-1665 TCGA-09-2055 TCGA-10-0937 
       48.89        27.88        31.86        41.59        26.93        15.12 
TCGA-13-0762 TCGA-13-0768 TCGA-13-0795 TCGA-13-0885 TCGA-13-0888 TCGA-13-0899 
       32.25         8.42        19.56        91.40        70.39        56.15 
TCGA-13-0901 TCGA-13-0904 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1497 
       19.36        48.33         6.05         5.92         4.70        54.31 
TCGA-13-1510 TCGA-13-2059 TCGA-13-2060 TCGA-20-1686 TCGA-23-1022 TCGA-23-1110 
        2.56        12.23         8.58         2.93        42.51        54.51 
TCGA-23-1114 TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 
       68.68         6.38        33.47        58.13         0.53       115.89 
TCGA-24-0968 TCGA-24-1430 TCGA-24-1466 TCGA-24-1558 TCGA-24-1567 TCGA-24-1616 
       19.63        28.34        45.14        19.53        17.23        38.24 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1924 TCGA-24-2020 TCGA-24-2026 TCGA-24-2030 
        3.72         3.81        30.21       151.99        34.82        53.95 
TCGA-24-2289 TCGA-25-1314 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1628 
       67.36        31.99        34.98        65.00        33.96        20.58 
TCGA-25-1635 TCGA-25-2400 TCGA-29-1695 TCGA-29-1711 TCGA-29-1778 TCGA-29-2425 
       51.22        42.02         0.79        34.62        14.93        65.00 
TCGA-36-2537 TCGA-36-2547 TCGA-42-2589 TCGA-57-1583 TCGA-57-1586 TCGA-57-1994 
       25.91        20.52         7.56        11.38        22.32        25.02 
TCGA-61-1722 TCGA-61-1728 TCGA-61-1730 TCGA-61-1899 TCGA-61-1907 TCGA-61-1917 
        8.05        27.88         4.34         8.42        31.30        43.43 
TCGA-61-2018 TCGA-61-2096 TCGA-61-2614 
       45.40        58.39         8.58 

$`18P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       18.51        11.87        65.49        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       65.46        49.28        44.32        33.67        76.54        71.47 
TCGA-04-1514 TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1648 
       56.55        19.99       119.08        29.06        55.40        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       64.64        36.23        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       74.89        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
       20.91        12.46        54.31        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       33.24        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 
       11.18        11.38        11.54        34.06        31.04        21.40 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
       38.93        36.72        28.70        30.35         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 
       13.61        68.91       107.18        74.27        66.64        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 
       67.99        69.01        43.36        57.47        57.07        47.38 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       29.98        21.14        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1409 TCGA-13-1411 
        6.08        10.88         6.61         7.36         6.84         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       20.68        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       38.17        49.22         4.24        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        3.88         3.09        14.24        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 
       19.07        16.67         2.66        47.54        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 
        2.24        51.35         3.22        31.20         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-2072 TCGA-23-2078 
       86.01       129.96         4.27        39.09        24.95        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
        7.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       54.08        63.55        47.41         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        5.36         4.80        17.36        19.17        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
        8.55        72.92        12.46       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
        1.18        22.19        26.96        57.37        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       56.58        41.06        51.91        41.39        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       70.62        39.88        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 
       10.26        90.15        88.34        48.33         8.32         3.48 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 
       16.41        11.05        81.11         4.87        44.84        58.16 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
      109.68        14.43        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       70.45        44.58         0.82        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 
       55.86        53.26         1.02        26.93        51.06        37.02 
TCGA-25-1317 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
        1.02        36.95         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       18.02        15.78         0.36         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       60.59        35.54        14.93        24.99        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       45.01        19.99         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 
       78.87        44.71        47.18       101.75        38.53        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
       31.17        68.28         0.53        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       18.25        41.95        29.23        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 
       17.29        12.36        11.84        12.30         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
        5.36        34.62        86.17        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       29.79        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       18.31        14.17         6.05        16.14        11.47        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 
        9.07         9.44         7.46         7.63        24.03        21.14 
TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
        1.74        28.96        25.05       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1733 TCGA-61-1734 
       11.11        20.94        31.40        18.54        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        1.41         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 
       37.02        42.48        48.92        56.58        67.73        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 
       30.61        39.85        30.64         1.18        45.96         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 
        4.77        51.72        71.74        61.64        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       22.22        51.91        15.88         6.35        31.07 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.53               0.26 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            151.99             180.16 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             31.86              27.48 
[1] "0.5 - 152.0 (31.9)" "0.3 - 180.2 (27.5)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
[1] "hr=" "1.3"
D32V2, continuous
D32V3, multiclass
                    clus
vv                   18P GAIN MUTATED 18P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            75                475
  PERITONEUM (OVARY)                0                  2
D32V4, continuous
D32V5, multiclass
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  I                  6                 10
  II                 1                 25
  III               61                364
  IV                 6                 76
D32V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      0   75
  18P GAIN WILD-TYPE    3  476
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 0                  3
  YES               75                476
D32V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     66    9
  18P GAIN WILD-TYPE  384   95
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                66                384
  YES                9                 95

Clustering(33) Variable = 18q gain mutation analysis
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    20  21
  18Q GAIN WILD-TYPE 243 264
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                41                507 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                21                264 
$`18Q GAIN MUTATED`
TCGA-04-1516 TCGA-04-1644 TCGA-04-1646 TCGA-04-1652 TCGA-09-1661 TCGA-09-1665 
       41.59        48.89        27.88        31.86        38.43        41.59 
TCGA-09-2055 TCGA-13-0717 TCGA-13-0762 TCGA-13-0795 TCGA-13-0901 TCGA-13-0904 
       26.93        24.59        32.25        19.56        19.36        48.33 
TCGA-13-1410 TCGA-13-1497 TCGA-13-1510 TCGA-13-2060 TCGA-23-1114 TCGA-23-1123 
        4.70        54.31         2.56         8.58        68.68        33.47 
TCGA-23-1809 TCGA-24-0968 TCGA-24-1430 TCGA-24-1466 TCGA-24-1845 TCGA-24-1924 
        0.53        19.63        28.34        45.14         3.81        30.21 
TCGA-24-2026 TCGA-25-1318 TCGA-25-1319 TCGA-25-1635 TCGA-29-1695 TCGA-29-1705 
       34.82        34.98        65.00        51.22         0.79        18.25 
TCGA-29-1778 TCGA-29-1784 TCGA-36-2537 TCGA-61-1722 TCGA-61-1899 TCGA-61-1907 
       14.93         5.36        25.91         8.05         8.42        31.30 
TCGA-61-1917 TCGA-61-1998 TCGA-61-2012 TCGA-61-2101 TCGA-61-2614 
       43.43         5.52        30.64        55.50         8.58 

$`18Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        82.36        56.55        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1648 TCGA-04-1649 
      119.08        29.06        84.20        55.40        28.64        64.64 
TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       36.23        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 
       17.95        35.54         9.96        89.33        74.89        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2056 
      112.37        71.11        63.09        39.75        20.91        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
        6.21        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.54        34.06        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       36.72        28.70        30.35         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 
       61.81        67.99        69.01        43.36        57.47        56.15 
TCGA-13-0900 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       57.07        47.38        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        6.05         5.92         6.84         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       70.82        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
        4.24        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 
        4.21         4.41         4.77         4.14         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       14.24        12.23        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       25.94        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 
       39.09        58.13        24.95       115.89        87.48        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
        4.80        17.36        19.17        18.67        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       72.92        12.46       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       39.88        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       10.26        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        8.32         3.48         3.72         4.37        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        5.49         9.80        22.65        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
        4.87       151.99        44.84        58.16       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       37.02         1.02        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 
        7.86         0.30        56.94        60.59        35.54        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
       47.18       101.75        38.53        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 TCGA-29-1710 
        0.53        16.90        18.64        59.67        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       34.62        17.00        85.68        66.77        62.93        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       31.23        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 
       11.84        12.30         8.35         7.20        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       65.00        62.47        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       11.47         9.76        38.07        51.91        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.55         8.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 
       24.69        35.05        33.01        29.49        29.79        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       14.17         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 
        2.14         5.39        44.78        11.11        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       18.54        27.88         4.34        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 
        5.79        11.41        13.02         9.07        34.13        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 
       42.48        48.92        56.58        67.73        15.75        38.17 
TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        1.97        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 
       71.74        61.64        58.39        60.62        65.49         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       15.88         6.35        31.07 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.53               0.26 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             68.68             180.16 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             28.34              28.18 
[1] "0.5 - 68.7 (28.3)"  "0.3 - 180.2 (28.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
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        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
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        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
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        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
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        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
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        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
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        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
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        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
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        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
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        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
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        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
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        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
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        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
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        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
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        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
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        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
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        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
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        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
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        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
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        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
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        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
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        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
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        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
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        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
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        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
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        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
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        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
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        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
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        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
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        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
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        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
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        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
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        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
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        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
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        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
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        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
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        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
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  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
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        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
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        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
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        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
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        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
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        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
[1] "hr=" "1.3"
D33V2, continuous
D33V3, multiclass
                    clus
vv                   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            41                509
  PERITONEUM (OVARY)                0                  2
D33V4, continuous
D33V5, multiclass
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  I                  3                 13
  II                 2                 24
  III               34                391
  IV                 2                 80
D33V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      1   40
  18Q GAIN WILD-TYPE    2  511
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 1                  2
  YES               40                511
D33V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     38    3
  18Q GAIN WILD-TYPE  412  101
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                38                412
  YES                3                101

Clustering(34) Variable = 19p gain mutation analysis
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    47  49
  19P GAIN WILD-TYPE 216 236
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                96                452 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                49                236 
$`19P GAIN MUTATED`
TCGA-04-1335 TCGA-04-1342 TCGA-04-1346 TCGA-04-1514 TCGA-04-1525 TCGA-04-1542 
        1.81        18.51        65.49        56.55        38.37        84.20 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1652 TCGA-09-0367 TCGA-09-1665 TCGA-09-1667 
       28.64        64.64        31.86        17.95        41.59        61.87 
TCGA-09-1670 TCGA-09-1674 TCGA-09-2043 TCGA-09-2054 TCGA-10-0926 TCGA-10-0933 
       17.98         8.55         6.15        20.91        25.91        11.70 
TCGA-10-0938 TCGA-13-0727 TCGA-13-0764 TCGA-13-0802 TCGA-13-0807 TCGA-13-0883 
       19.86        15.19        31.04         8.19        13.61        68.91 
TCGA-13-0884 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1491 TCGA-13-1506 
      107.18         6.05         5.92         4.70        52.44         4.41 
TCGA-13-1510 TCGA-13-2057 TCGA-20-0990 TCGA-20-0991 TCGA-20-1686 TCGA-23-1024 
        2.56        14.24        25.94        26.20         2.93        15.39 
TCGA-23-1109 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1121 TCGA-23-1809 
       51.35         3.22         4.57        33.30         6.38         0.53 
TCGA-24-1417 TCGA-24-1426 TCGA-24-1428 TCGA-24-1436 TCGA-24-1548 TCGA-24-1551 
        7.82         5.36        17.36         8.55        16.21        51.91 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 
       39.88        19.53        48.33        38.24         3.48         3.72 
TCGA-24-1845 TCGA-24-1920 TCGA-24-2020 TCGA-24-2033 TCGA-24-2261 TCGA-24-2267 
        3.81         9.80       151.99        18.48         0.79        47.54 
TCGA-24-2295 TCGA-25-1314 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       33.11        31.99        34.98        65.00        36.95        33.96 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-29-1695 TCGA-29-1698 TCGA-29-1702 
       12.00         2.96        18.58         0.79        68.28        18.64 
TCGA-29-1711 TCGA-29-1770 TCGA-29-1783 TCGA-29-2432 TCGA-29-2434 TCGA-30-1714 
       34.62        24.36         7.20        11.84        11.47        38.07 
TCGA-30-1862 TCGA-31-1950 TCGA-36-2547 TCGA-36-2552 TCGA-57-1583 TCGA-57-1586 
        6.08        18.77        20.52        11.47        11.38        22.32 
TCGA-59-2348 TCGA-59-2351 TCGA-59-2355 TCGA-61-1730 TCGA-61-1899 TCGA-61-1904 
      180.16       116.12         2.14         4.34         8.42         9.07 
TCGA-61-1911 TCGA-61-1918 TCGA-61-2000 TCGA-61-2009 TCGA-61-2097 TCGA-61-2104 
       42.48        15.75        14.50        39.85        60.62        76.83 

$`19P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00        49.15         2.01        46.62        11.87 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       63.06        48.76        21.57        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       32.52        44.32        33.67        76.54        71.47        82.36 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 
       41.59        19.99       119.08        29.06        55.40        48.89 
TCGA-04-1646 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       27.88        36.23        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       57.73        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1666 TCGA-09-1668 TCGA-09-1669 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 
       57.57        55.36        30.48         5.85         3.02        97.55 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0927 TCGA-10-0928 
       39.75        26.93        12.46        54.31        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       33.24        32.28         3.88        35.41        35.80        15.12 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       31.07        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.54        34.06        32.25        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0885 
        8.12         8.28        43.82        35.28        35.28        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       74.27        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1409 
        6.41         6.08        10.88         6.61         7.36         6.84 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1492 
       98.04        20.68        22.39        70.82        82.88        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 
       13.97        32.84        16.57         4.21         4.77         4.14 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
        3.88         3.09        12.23         8.58        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
        6.28        23.05        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 
       16.67         2.66        47.54        42.51        40.54        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       54.51        31.20        68.68        86.01       129.96         4.27 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       39.09        33.47        58.13        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 
        4.80        28.34        19.17        18.67        43.53        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 
       22.19        26.96        57.37        64.27        56.58        41.06 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1560 TCGA-24-1562 
       41.39        58.09        88.50        70.62        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1842 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1923 
        8.32         4.37        11.28         5.75         5.49        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 
       30.21        16.41        11.05        81.11         4.87        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 
       58.16        34.82       109.68        14.43        53.95        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2271 
       64.01        44.48        57.07        36.16         0.36        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 
       55.86        53.26         1.02        26.93        51.06        37.02 
TCGA-25-1317 TCGA-25-1322 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        1.02         2.99        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
        7.86         0.30        56.94        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       14.93        24.99        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       44.71        47.18       101.75        38.53        33.70        31.17 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
        0.53        16.90        59.67        18.25        41.95        29.23 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       17.00        85.68        66.77        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       22.98        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
       14.93         8.35         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2436 TCGA-30-1718 
       62.47        45.11         4.87        42.25         9.76        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
       34.78        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       48.79        45.57        30.18        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.55         8.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
       14.17         6.05        16.14        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1585 
        7.56         7.46         7.63        24.03        21.14         1.74 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 
       28.96        25.05        25.02        80.12        22.32         9.40 
TCGA-59-2354 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
       34.39         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       31.40        18.54        27.88        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        5.79        11.41        13.02        34.13        31.30        37.02 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 
       48.92        56.58        67.73        43.43        38.17         1.97 
TCGA-61-1998 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 
        5.52        17.98         3.98        30.61        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2109 
       61.64        58.39        65.49        55.50         6.48        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       44.52       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.53               0.26 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            180.16             129.96 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            18.545             29.440 
[1] "0.5 - 180.2 (18.5)" "0.3 - 130.0 (29.4)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D34V2, continuous
D34V3, multiclass
                    clus
vv                   19P GAIN MUTATED 19P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            97                453
  PERITONEUM (OVARY)                0                  2
D34V4, continuous
D34V5, multiclass
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  I                  3                 13
  II                 8                 18
  III               75                350
  IV                11                 71
D34V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      1   96
  19P GAIN WILD-TYPE    2  455
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 1                  2
  YES               96                455
D34V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED     76   21
  19P GAIN WILD-TYPE  374   83
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                76                374
  YES               21                 83

Clustering(35) Variable = 19q gain mutation analysis
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    40  48
  19Q GAIN WILD-TYPE 223 237
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                88                460 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                48                237 
$`19Q GAIN MUTATED`
TCGA-04-1342 TCGA-04-1346 TCGA-04-1516 TCGA-04-1525 TCGA-04-1536 TCGA-04-1542 
       18.51        65.49        41.59        38.37        29.06        84.20 
TCGA-04-1648 TCGA-04-1652 TCGA-09-0364 TCGA-09-0365 TCGA-09-1670 TCGA-09-1674 
       28.64        31.86        29.16         9.47        17.98         8.55 
TCGA-09-2043 TCGA-10-0926 TCGA-10-0933 TCGA-13-0717 TCGA-13-0727 TCGA-13-0802 
        6.15        25.91        11.70        24.59        15.19         8.19 
TCGA-13-0883 TCGA-13-0885 TCGA-13-0920 TCGA-13-1408 TCGA-13-1410 TCGA-13-1492 
       68.91        91.40        13.81         5.92         4.70        73.55 
TCGA-13-1504 TCGA-13-1506 TCGA-20-0990 TCGA-20-0991 TCGA-23-1022 TCGA-23-1111 
       16.57         4.41        25.94        26.20        42.51         3.22 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1121 TCGA-23-1809 TCGA-24-1417 TCGA-24-1426 
        4.57        33.30         6.38         0.53         7.82         5.36 
TCGA-24-1428 TCGA-24-1434 TCGA-24-1436 TCGA-24-1548 TCGA-24-1551 TCGA-24-1552 
       17.36        18.67         8.55        16.21        51.91        41.39 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 
       39.88        19.53        48.33        38.24         3.48         3.72 
TCGA-24-1845 TCGA-24-1847 TCGA-24-1923 TCGA-24-2020 TCGA-24-2033 TCGA-24-2261 
        3.81        11.28        22.65       151.99        18.48         0.79 
TCGA-24-2267 TCGA-24-2295 TCGA-25-1312 TCGA-25-1314 TCGA-25-1317 TCGA-25-1318 
       47.54        33.11         1.02        31.99         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       65.00        36.95        33.96        12.00         2.96        18.58 
TCGA-29-1695 TCGA-29-1698 TCGA-29-1701 TCGA-29-1770 TCGA-29-1775 TCGA-29-2432 
        0.79        68.28        16.90        24.36        12.36        11.84 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1718 TCGA-36-1578 TCGA-36-2552 TCGA-57-1586 
       11.47        38.07        51.91        27.85        11.47        22.32 
TCGA-59-2348 TCGA-59-2351 TCGA-61-1722 TCGA-61-1730 TCGA-61-1741 TCGA-61-1904 
      180.16       116.12         8.05         4.34        33.67         9.07 
TCGA-61-1911 TCGA-61-1918 TCGA-61-2009 TCGA-61-2097 
       42.48        15.75        39.85        60.62 

$`19Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       11.87        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       49.28        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1530 TCGA-04-1638 TCGA-04-1644 
       82.36        56.55        19.99       119.08        55.40        48.89 
TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 
       27.88        64.64        36.23        47.70        45.34        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1672 
       41.59        57.57        61.87        55.36        30.48         5.85 
TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
        3.02        97.55         6.12        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
       71.11        63.09        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 
       54.31        81.47        18.48        33.24        32.28         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 
       35.41        35.80        15.12        19.86         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 
       39.58         2.73        12.39        31.07        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
        2.47        11.18        11.38        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       30.35        19.56         8.71         7.79         8.12         8.28 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 TCGA-13-0886 
       43.82        35.28        35.28        13.61       107.18        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       57.47        56.15        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       29.98        21.14        14.89         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1409 TCGA-13-1411 
       10.88         6.61         7.36         6.05         6.84         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 
       20.68        22.39        70.82        82.88        52.44        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       32.84         4.21         4.77         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
        3.09        14.24        12.23         8.58        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
        6.28        23.05        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 
       16.67         2.93         2.66        47.54        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 
        2.24        51.35        54.51        31.20        68.68        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 
      129.96         4.27        39.09        33.47        58.13        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.31         6.38         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 
        6.02         5.95         4.80        28.34        19.17        43.53 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 
        1.18        22.19        26.96        57.37        64.27        56.58 
TCGA-24-1550 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1560 TCGA-24-1562 
       41.06        58.09        88.50        70.62        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1842 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1924 
        8.32         4.37         5.75         5.49         9.80        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 
       16.41        11.05        81.11         4.87        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 
       34.82       109.68        14.43        53.95        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 
       44.48        57.07        36.16         0.36        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 
       44.58         0.82        67.36        36.23        16.64        55.86 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1322 TCGA-25-1625 
       53.26        26.93        51.06        37.02         2.99        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       15.78         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
       60.59        35.54        51.22        14.93        24.99        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       85.05        13.02        49.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 
       12.00        45.01        19.99        42.02         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       30.97        26.96        78.87        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1702 TCGA-29-1703 
       38.53        33.70        31.17         0.53        18.64        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       18.25        41.95        29.23        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 
       66.77        62.93        39.09        31.23        22.98        22.52 
TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       17.29        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        5.36        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2436 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
        4.87        42.25         9.76        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 
        0.26        48.07        44.91        34.78         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
        1.18        57.57        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       30.18        18.77        22.45         6.71        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 
        2.17        28.73        29.06        21.53        22.85        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
        8.55        30.05        25.74        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
        6.05        16.14        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.46         7.63        24.03        11.38        21.14         1.74 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 
       28.96        25.05        25.02        80.12        22.32         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1724 
       34.39         2.14         5.39        44.78        11.11        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       31.40        18.54        27.88        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       44.84        35.80         2.43        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        5.79        11.41        13.02        34.13        31.30        37.02 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 
       48.92        56.58        67.73        43.43        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 
        5.52        14.50        17.98         3.98        30.61        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       71.74        61.64        58.39        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.53               0.26 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            180.16             129.96 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             19.10              29.31 
[1] "0.5 - 180.2 (19.1)" "0.3 - 130.0 (29.3)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D35V2, continuous
D35V3, multiclass
                    clus
vv                   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            90                460
  PERITONEUM (OVARY)                0                  2
D35V4, continuous
D35V5, multiclass
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  I                  4                 12
  II                 7                 19
  III               68                357
  IV                11                 71
D35V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      1   89
  19Q GAIN WILD-TYPE    2  462
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 1                  2
  YES               89                462
D35V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     72   18
  19Q GAIN WILD-TYPE  378   86
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                72                378
  YES               18                 86

Clustering(36) Variable = 20p gain mutation analysis
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    97 129
  20P GAIN WILD-TYPE 166 156
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               226                322 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               129                156 
$`20P GAIN MUTATED`
TCGA-04-1332 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
       41.00         2.01        18.51        11.87        65.49        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1364 TCGA-04-1514 
       21.57        63.98        65.46        49.28        33.67        56.55 
TCGA-04-1517 TCGA-04-1542 TCGA-04-1646 TCGA-04-1649 TCGA-04-1655 TCGA-09-0366 
       19.99        84.20        27.88        64.64        45.34        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1665 TCGA-09-1668 
       17.95        35.54         9.96        38.43        41.59        55.36 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2051 TCGA-09-2053 TCGA-10-0933 TCGA-10-0935 
        8.55         6.15        63.09        39.75        11.70        35.41 
TCGA-10-0936 TCGA-10-0938 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
       35.80        19.86        24.59        39.58         2.73        12.39 
TCGA-13-0727 TCGA-13-0751 TCGA-13-0757 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       15.19        55.17        11.18        32.25        31.04        21.40 
TCGA-13-0794 TCGA-13-0800 TCGA-13-0802 TCGA-13-0803 TCGA-13-0884 TCGA-13-0885 
       30.35         8.12         8.19        43.82       107.18        91.40 
TCGA-13-0888 TCGA-13-0899 TCGA-13-0904 TCGA-13-0913 TCGA-13-0923 TCGA-13-1407 
       70.39        56.15        48.33        29.98         6.41         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1412 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 
        5.92         6.84         5.33        87.06        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1492 TCGA-13-1497 TCGA-13-1499 TCGA-13-1504 
       22.39        70.82        73.55        54.31        38.37        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-2057 TCGA-13-2061 TCGA-20-0990 
        4.21         4.41         4.77        14.24        10.78        25.94 
TCGA-20-0991 TCGA-20-1685 TCGA-23-1021 TCGA-23-1024 TCGA-23-1031 TCGA-23-1032 
       26.20        16.67        47.54        15.39        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1114 TCGA-23-1121 TCGA-23-1122 
       51.35        54.51         3.22        68.68         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2084 TCGA-23-2643 TCGA-23-2645 
       33.47        58.13         0.53        49.84         4.70         4.50 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 TCGA-24-1464 
        6.25         6.02        28.34        19.17         8.55        12.46 
TCGA-24-1466 TCGA-24-1469 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
       45.14         9.11        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1564 TCGA-24-1604 
       16.21        58.09        70.62        39.88        25.87        88.34 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 TCGA-24-1850 TCGA-24-1928 TCGA-24-1930 
        3.72         3.81        11.28         5.49        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 TCGA-24-2027 TCGA-24-2033 TCGA-24-2260 
        4.87       151.99        34.82       109.68        18.48        36.16 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2295 
       70.45        44.58         0.82        67.36        36.23        33.11 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
        1.02        26.93         1.02        34.98        65.00        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 
       33.96         2.99        12.00         2.96        18.58        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 
        0.36        20.58        60.59        35.54        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2396 TCGA-25-2398 TCGA-25-2400 TCGA-25-2404 
       18.05        85.05         3.02        45.01        42.02        29.00 
TCGA-25-2408 TCGA-29-1688 TCGA-29-1691 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 
       30.97        78.87        47.18         0.79        68.28         0.53 
TCGA-29-1701 TCGA-29-1703 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 
       16.90        59.67        29.23        17.00        66.77        39.09 
TCGA-29-1770 TCGA-29-1775 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 TCGA-29-2414 
       24.36        12.36        14.93         7.20         5.36        86.17 
TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-30-1714 TCGA-30-1718 
       65.00        45.11         4.87        42.25        38.07        51.91 
TCGA-30-1856 TCGA-30-1859 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-30-1892 
       15.68        48.07        34.78         6.08         1.18        48.79 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1571 
       18.77        22.45         2.17        28.73        29.06        22.85 
TCGA-36-1575 TCGA-36-1576 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 
        8.55        30.05        20.52        14.17        16.14        11.47 
TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-59-2351 TCGA-59-2352 TCGA-59-2363 
       11.38         1.74        22.32       116.12         9.40         5.39 
TCGA-59-2372 TCGA-61-1722 TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 TCGA-61-1743 
       44.78         8.05        18.54         4.34        31.76        43.69 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1911 
        8.42         5.79        13.02         9.07        31.30        42.48 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-2003 TCGA-61-2008 
       56.58        67.73        43.43        15.75         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       39.85        30.64        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2113 TCGA-61-2612 TCGA-61-2614 
       76.83        22.22         6.35         8.58 

$`20P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1348 TCGA-04-1361 
       40.24         1.81        49.15        46.62        48.76        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 TCGA-04-1525 
       44.32        76.54        71.47        82.36        41.59        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1651 
      119.08        29.06        55.40        48.89        28.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0365 TCGA-09-1662 TCGA-09-1664 
       31.86        47.70        29.16         9.47        89.33        74.89 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       57.57        61.87        30.48        17.98         5.85         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       97.55         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0937 TCGA-13-0714 
       18.48        33.24        32.28         3.88        15.12         6.21 
TCGA-13-0720 TCGA-13-0726 TCGA-13-0730 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 
       44.55        31.07        17.79         2.47        11.38        11.54 
TCGA-13-0761 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 
       34.06         8.42        38.93        36.72        28.70        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.71         7.79         8.28        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       68.91        74.27        66.64        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 
       43.36        57.47        57.07        19.36        47.38        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 
       44.94        44.84        37.08        27.68        34.06        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       14.89        13.81         4.64         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1410 TCGA-13-1411 TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 
        7.36         4.70         4.21        54.61        61.71        29.39 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 
       82.88        52.44        38.17        49.22         4.24        37.61 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
       13.97        32.84         4.14         2.56         3.88         3.09 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0996 
       12.23         8.58         8.75         6.28        23.05        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 
       27.48        25.38        19.07         2.93         2.66        42.51 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       40.54        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       31.20         4.57        33.30        86.01       129.96         4.27 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 
       24.95       115.89        87.48        91.66        77.00         2.76 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 
        7.82         7.99         7.86         0.76         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1467 
        4.80        17.36        18.67        43.53        72.92       105.99 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
        3.42         1.18        56.58        41.06        51.91        41.39 
TCGA-24-1555 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1565 
       88.50        19.53        44.09        45.50        47.70        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       17.23        90.15        48.33        38.24         8.32         3.48 
TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        4.37         5.75         9.80        22.65        30.21        16.41 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 
       44.84        58.16        14.43        53.95        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.48        57.07         0.79         0.36        47.54        31.63 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       16.64        55.86        53.26        31.99        51.06        37.02 
TCGA-25-1625 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1635 TCGA-25-2042 
       18.02         7.86         0.30        56.94        51.22        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 
       49.05         1.02        38.04        12.00        19.99         2.96 
TCGA-25-2409 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       26.96        44.71       101.75        38.53        33.70        31.17 
TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 
       18.64        18.25        41.95        34.62        85.68        62.93 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 
       31.23        22.98        22.52        17.29        11.84        12.30 
TCGA-29-1781 TCGA-29-1785 TCGA-29-2427 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
        8.35        34.62        62.47        11.84        11.47         9.76 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1860 TCGA-30-1866 TCGA-30-1880 
       36.26         2.47         0.26        44.91        36.62        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-31-1944 TCGA-31-1946 TCGA-31-1953 TCGA-31-1955 
       24.26        30.05        45.57        30.18         6.71        42.51 
TCGA-31-1956 TCGA-36-1570 TCGA-36-1574 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       44.09        21.53        22.55        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2549 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
        6.05        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
        7.63        24.03        21.14        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 TCGA-61-1721 
      180.16        80.12        22.32        34.39         2.14        11.11 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       20.94        31.40        27.88        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1901 TCGA-61-1906 
       35.80         2.43        33.67         1.41        11.41        34.13 
TCGA-61-1910 TCGA-61-1913 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       37.02        48.92        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       17.98         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2109 TCGA-61-2110 
       51.72        71.74        61.64        58.39        20.68        44.52 
TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 
      125.72        51.91        15.88        31.07 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.36               0.26 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            151.99             180.16 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            26.565             28.830 
[1] "0.4 - 152.0 (26.6)" "0.3 - 180.2 (28.8)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
[1] "hr=" "1.2"
D36V2, continuous
D36V3, multiclass
                    clus
vv                   20P GAIN MUTATED 20P GAIN WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           227                323
  PERITONEUM (OVARY)                1                  1
D36V4, continuous
D36V5, multiclass
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  I                  6                 10
  II                15                 11
  III              177                248
  IV                28                 54
D36V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      2  227
  20P GAIN WILD-TYPE    1  324
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 2                  1
  YES              227                324
D36V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED    181   48
  20P GAIN WILD-TYPE  269   56
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO               181                269
  YES               48                 56

Clustering(37) Variable = 20q gain mutation analysis
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED   120 143
  20Q GAIN WILD-TYPE 143 142
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               263                285 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               143                142 
$`20Q GAIN MUTATED`
TCGA-04-1332 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
       41.00         2.01        18.51        11.87        65.49        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1364 TCGA-04-1371 
       21.57        63.98        65.46        49.28        33.67        82.36 
TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 TCGA-04-1542 TCGA-04-1646 TCGA-04-1649 
       56.55        19.99        38.37        84.20        27.88        64.64 
TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       31.86        45.34        29.16        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1665 TCGA-09-1668 TCGA-09-1669 TCGA-09-1674 TCGA-09-2051 
       38.43        41.59        55.36        30.48         8.55        63.09 
TCGA-09-2053 TCGA-10-0933 TCGA-10-0935 TCGA-10-0936 TCGA-10-0938 TCGA-13-0717 
       39.75        11.70        35.41        35.80        19.86        24.59 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
       39.58         2.73        12.39        15.19        17.79        55.17 
TCGA-13-0757 TCGA-13-0762 TCGA-13-0766 TCGA-13-0794 TCGA-13-0795 TCGA-13-0800 
       11.18        32.25        21.40        30.35        19.56         8.12 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0888 
        8.19        43.82       107.18        91.40        74.27        70.39 
TCGA-13-0893 TCGA-13-0899 TCGA-13-0901 TCGA-13-0905 TCGA-13-0906 TCGA-13-0911 
       43.36        56.15        19.36        47.84        44.94        27.68 
TCGA-13-0913 TCGA-13-0923 TCGA-13-1403 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       29.98         6.41        10.88         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1412 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
        4.70         5.33        87.06        98.04        20.68        22.39 
TCGA-13-1492 TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       73.55        38.37        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-20-0990 TCGA-20-0991 
        4.77        14.24         8.58        10.78        25.94        26.20 
TCGA-20-1685 TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1031 TCGA-23-1032 
       16.67        47.54        42.51        15.39        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       51.35        54.51         3.22        68.68         4.57        33.30 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2079 
        6.38        39.09        33.47        58.13         0.53        91.66 
TCGA-23-2084 TCGA-23-2643 TCGA-23-2645 TCGA-24-0982 TCGA-24-1103 TCGA-24-1417 
       49.84         4.70         4.50        22.32        54.08         7.82 
TCGA-24-1418 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1431 
        7.99         6.25         6.02         5.36         4.80        19.17 
TCGA-24-1434 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1474 
       18.67         8.55        12.46        45.14         9.11        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1553 TCGA-24-1556 
       26.96        57.37        64.27        16.21        58.09        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1604 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 
       39.88        19.53        88.34         3.72         3.81        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 
        5.75         5.49         9.80        30.21        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 TCGA-24-2027 TCGA-24-2033 TCGA-24-2260 
        4.87       151.99        34.82       109.68        18.48        36.16 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2295 
       70.45        44.58         0.82        67.36        36.23        33.11 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
        1.02        26.93         1.02        34.98        65.00        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 
       33.96         2.99        12.00         2.96        18.58        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 
        0.36        20.58         0.30        60.59        35.54        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2396 TCGA-25-2398 TCGA-25-2400 
       24.99        18.05        85.05         3.02        45.01        42.02 
TCGA-25-2404 TCGA-25-2408 TCGA-29-1688 TCGA-29-1691 TCGA-29-1695 TCGA-29-1698 
       29.00        30.97        78.87        47.18         0.79        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 TCGA-29-1770 TCGA-29-1774 
       29.23        17.00        66.77        39.09        24.36        17.29 
TCGA-29-1775 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 TCGA-29-2414 TCGA-29-2425 
       12.36        14.93         7.20         5.36        86.17        65.00 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       45.11         4.87        42.25         9.76        38.07        51.91 
TCGA-30-1856 TCGA-30-1859 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 
       15.68        48.07        34.78         6.08         1.18        24.26 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1950 TCGA-31-1959 TCGA-36-1569 TCGA-36-1571 
       48.79        45.57        18.77         2.17        29.06        22.85 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1581 TCGA-36-2534 TCGA-36-2547 TCGA-36-2548 
        8.55        30.05        24.69        29.79        20.52        14.17 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 
       16.14        11.47         7.63        24.03        11.38         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2351 TCGA-59-2352 
       22.32        28.96        25.05        25.02       116.12         9.40 
TCGA-59-2372 TCGA-61-1722 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       44.78         8.05        18.54        27.88         4.34        31.76 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 
       33.67        43.69         8.42         5.79        13.02         9.07 
TCGA-61-1907 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       31.30        42.48        56.58        67.73        43.43        15.75 
TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
        3.98        39.85        30.64        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2113 TCGA-61-2612 TCGA-61-2614 
        6.48        76.83        22.22         6.35         8.58 

$`20Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1348 TCGA-04-1361 
       40.24         1.81        49.15        46.62        48.76        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1516 TCGA-04-1530 TCGA-04-1536 
       44.32        76.54        71.47        41.59       119.08        29.06 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1651 TCGA-04-1654 TCGA-09-0365 
       55.40        48.89        28.64        36.23        47.70         9.47 
TCGA-09-0366 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1670 
       57.73        89.33        74.89        57.57        61.87        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        5.85         3.02        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
        4.50       112.37        71.11        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0934 TCGA-10-0937 TCGA-13-0714 TCGA-13-0720 TCGA-13-0726 TCGA-13-0755 
        3.88        15.12         6.21        44.55        31.07         2.47 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 
       11.38        11.54        34.06        31.04         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0804 
       36.72        28.70         8.71         7.79         8.28        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 
       35.28        13.61        68.91        66.64        61.81        67.99 
TCGA-13-0891 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0908 
       69.01        57.47        57.07        47.38        48.33        44.84 
TCGA-13-0910 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       37.08        34.06        21.14        14.89        13.81         4.64 
TCGA-13-0924 TCGA-13-1404 TCGA-13-1405 TCGA-13-1411 TCGA-13-1477 TCGA-13-1482 
        6.08         6.61         7.36         4.21        54.61        61.71 
TCGA-13-1483 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 
       29.39        70.82        82.88        52.44        38.17        49.22 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1509 TCGA-13-1510 
        4.24        54.31        37.61        13.97         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
        3.88         3.09        12.23         8.75         6.28        23.05 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 
       72.20        27.48        25.38        19.07         2.93         2.66 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       40.54        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1113 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-2072 TCGA-23-2077 
       31.20        86.01       129.96         4.27        24.95       115.89 
TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       87.48        77.00         2.76         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       21.80        41.56         7.66        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 TCGA-24-1428 TCGA-24-1430 
        6.38         7.86         0.76         5.95        17.36        28.34 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1549 
       43.53        72.92       105.99         3.42         1.18        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1560 TCGA-24-1562 
       41.06        51.91        41.39        88.50        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 
       47.70        25.87        10.26        17.23        90.15        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1846 TCGA-24-1923 TCGA-24-1927 
       38.24         8.32         3.48         4.37        22.65        16.41 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 
       44.84        58.16        14.43        53.95        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.48        57.07         0.79         0.36        47.54        31.63 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       16.64        55.86        53.26        31.99        51.06        37.02 
TCGA-25-1625 TCGA-25-1630 TCGA-25-1632 TCGA-25-1635 TCGA-25-2042 TCGA-25-2391 
       18.02         7.86        56.94        51.22        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 TCGA-25-2409 
        1.02        38.04        12.00        19.99         2.96        26.96 
TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1711 
       44.71       101.75        38.53        33.70        31.17        34.62 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1776 
       85.68        62.93        31.23        22.98        22.52        11.84 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1785 TCGA-29-2427 TCGA-29-2432 TCGA-29-2434 
       12.30         8.35        34.62        62.47        11.84        11.47 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1860 TCGA-30-1866 TCGA-30-1880 
       36.26         2.47         0.26        44.91        36.62        57.57 
TCGA-30-1891 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       30.05        30.18        22.45         6.71        42.51        44.09 
TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       28.73        21.53        22.55        25.74        27.85        24.23 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       35.05        33.01        29.49        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2549 TCGA-42-2582 
       21.60         2.24        20.98        18.31         6.05        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-57-1584 TCGA-59-2348 
        9.07         9.44         7.56         7.46        21.14       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 
       80.12        22.32        34.39         2.14         5.39        11.11 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       20.94        31.40        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1895 TCGA-61-1901 TCGA-61-1906 TCGA-61-1910 TCGA-61-1913 
        2.43         1.41        11.41        34.13        37.02        48.92 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 
       38.17         1.97         5.52        14.50        17.98        30.61 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       71.74        61.64        58.39        20.68        44.52       125.72 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 
       51.91        15.88        31.07 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.30               0.26 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            151.99             180.16 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             24.99              30.05 
[1] "0.3 - 152.0 (25.0)" "0.3 - 180.2 (30.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
[1] "hr=" "1.2"
D37V2, continuous
D37V3, multiclass
                    clus
vv                   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           264                286
  PERITONEUM (OVARY)                1                  1
D37V4, continuous
D37V5, multiclass
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  I                  6                 10
  II                17                  9
  III              207                218
  IV                32                 50
D37V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      2  264
  20Q GAIN WILD-TYPE    1  287
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 2                  1
  YES              264                287
D37V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED    213   53
  20Q GAIN WILD-TYPE  237   51
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO               213                237
  YES               53                 51

Clustering(38) Variable = 21q gain mutation analysis
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    34  34
  21Q GAIN WILD-TYPE 229 251
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                68                480 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                34                251 
$`21Q GAIN MUTATED`
TCGA-04-1332 TCGA-04-1342 TCGA-04-1343 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       41.00        18.51        11.87        82.36        56.55        41.59 
TCGA-04-1644 TCGA-09-0365 TCGA-09-1670 TCGA-09-2043 TCGA-10-0936 TCGA-13-0724 
       48.89         9.47        17.98         6.15        35.80         2.73 
TCGA-13-0726 TCGA-13-0762 TCGA-13-0795 TCGA-13-0904 TCGA-13-1408 TCGA-13-1410 
       31.07        32.25        19.56        48.33         5.92         4.70 
TCGA-13-1496 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-2059 TCGA-20-0990 
        4.24        16.57         4.21         4.41        12.23        25.94 
TCGA-20-0991 TCGA-20-1683 TCGA-23-1116 TCGA-23-1121 TCGA-23-2643 TCGA-24-0979 
       26.20        25.38         4.57         6.38         4.70        41.56 
TCGA-24-1424 TCGA-24-1436 TCGA-24-1558 TCGA-24-1842 TCGA-24-1843 TCGA-24-1847 
        6.02         8.55        19.53         8.32         3.48        11.28 
TCGA-24-2019 TCGA-24-2260 TCGA-24-2295 TCGA-25-1312 TCGA-25-1319 TCGA-25-1323 
        4.87        36.16        33.11         1.02        65.00        12.00 
TCGA-25-1329 TCGA-25-1628 TCGA-25-1877 TCGA-25-2393 TCGA-25-2401 TCGA-29-1701 
        2.96        20.58        18.05        38.04         2.96        16.90 
TCGA-29-1707 TCGA-29-1762 TCGA-29-1778 TCGA-29-2428 TCGA-30-1861 TCGA-30-1862 
       41.95        85.68        14.93        45.11        34.78         6.08 
TCGA-30-1867 TCGA-31-1959 TCGA-36-1571 TCGA-36-1578 TCGA-36-2529 TCGA-36-2542 
        1.18         2.17        22.85        27.85        35.05        21.60 
TCGA-57-1585 TCGA-57-1992 TCGA-61-1915 TCGA-61-2003 TCGA-61-2101 TCGA-61-2102 
        1.74        28.96        67.73         3.98        55.50         6.48 
TCGA-61-2612 TCGA-61-2614 
        6.35         8.58 

$`21Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1346 
       40.24         1.81        49.15         2.01        46.62        65.49 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       63.06        48.76        21.57        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1517 
       32.52        44.32        33.67        76.54        71.47        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1646 
       38.37       119.08        29.06        84.20        55.40        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
       29.16        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 
       30.48         5.85         3.02         8.55        97.55         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       15.12        19.86         6.21        24.59        44.55        39.58 
TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       12.39        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.38        11.54        34.06        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
       38.93        36.72        28.70        30.35         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 
       56.15        57.07        19.36        47.38        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 
        6.61         7.36         6.05         6.84         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       22.39        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
       49.22        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0996 
        8.58        10.78         8.75         6.28        23.05        72.20 
TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       27.48        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
        3.22        31.20        68.68        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        4.27        39.09        33.47        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0980 
        4.50         7.63        19.63        11.64        21.80         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 
        7.82         7.99         7.86         0.76         6.25         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
       43.53        72.92        12.46        45.14       105.99         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        3.42         1.18        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       16.21        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       88.50        70.62        39.88        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 
       38.24         3.72         3.81         4.37         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 
        0.82        67.36        36.23        16.64        55.86        53.26 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       36.95        33.96         2.99        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
        0.36         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       51.22        14.93        24.99        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
        1.02         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 
        0.53        18.64        59.67        18.25        29.23        34.62 
TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       17.00        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       62.47         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       38.07        51.91        36.26         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
       48.07        44.91        36.62        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 
       42.51        44.09        28.73        29.06        21.53        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 
        8.55        30.05        25.74        24.23        24.69        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2543 
       29.49        29.79        25.91        25.08        23.80         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       11.47        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 TCGA-57-1993 
        7.63        24.03        11.38        21.14        22.32        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        9.07        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       56.58        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       14.50        17.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2104 TCGA-61-2109 
       61.64        58.39        60.62        65.49        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 
       44.52       125.72        22.22        51.91        15.88        31.07 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              1.02               0.26 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             85.68             180.16 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             17.44              29.44 
[1] "1.0 - 85.7 (17.4)"  "0.3 - 180.2 (29.4)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
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        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
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        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
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        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
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        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
[1] "hr=" "1.6"
D38V2, continuous
D38V3, multiclass
                    clus
vv                   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            67                483
  PERITONEUM (OVARY)                1                  1
D38V4, continuous
D38V5, multiclass
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  I                  3                 13
  II                 3                 23
  III               50                375
  IV                12                 70
D38V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      0   68
  21Q GAIN WILD-TYPE    3  483
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 0                  3
  YES               68                483
D38V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED     54   14
  21Q GAIN WILD-TYPE  396   90
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                54                396
  YES               14                 90

Clustering(39) Variable = 22q gain mutation analysis
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED     4   5
  22Q GAIN WILD-TYPE 259 280
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                539 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 5                280 
$`22Q GAIN MUTATED`
TCGA-13-0762 TCGA-24-1556 TCGA-24-1928 TCGA-25-1627 TCGA-29-1770 TCGA-29-2425 
       32.25        70.62        11.05         0.36        24.36        65.00 
TCGA-30-1861 TCGA-57-1585 TCGA-61-1904 
       34.78         1.74         9.07 

$`22Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       38.37       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       27.88        28.64        64.64        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       45.34        29.16         9.47        57.73        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 
       11.18        11.38        11.54        34.06        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       35.28        35.28        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       74.27        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       70.82        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
        4.24        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       16.57         4.21         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        3.88         3.09        14.24        12.23         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       47.54        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       54.51         3.22        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 
       58.13         0.53        24.95       115.89        87.48        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       54.08        63.55        47.41         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       43.53         8.55        72.92        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
        9.11         3.42         1.18        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       58.09        88.50        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       48.33        38.24         8.32         3.48         3.72         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       30.21        16.41        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 
        2.96        18.58        18.02        15.78        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 
       62.93        39.09        31.23        22.98        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
        5.36        34.62        86.17        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       18.31        20.52        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.30         9.07         9.44         7.56         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       24.03        11.38        21.14        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       51.91        15.88         6.35        31.07         8.58 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.36               0.26 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             70.62             180.16 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             24.36              28.34 
[1] "0.4 - 70.6 (24.4)"  "0.3 - 180.2 (28.3)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
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        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
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        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D39V2, continuous
D39V3, multiclass
                    clus
vv                   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                             9                541
  PERITONEUM (OVARY)                0                  2
D39V4, continuous
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 1                 75 
        TCGA-04-1346         TCGA-04-1347         TCGA-04-1351 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1356         TCGA-04-1367         TCGA-10-0925 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-10-0926         TCGA-13-0714         TCGA-13-0720 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0724         TCGA-13-0755         TCGA-13-0757 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0758         TCGA-13-0760         TCGA-13-0764 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0768         TCGA-13-0791         TCGA-13-0792 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0793         TCGA-13-0794         TCGA-13-0795 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0797         TCGA-13-0799         TCGA-13-0801 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0802         TCGA-13-0885         TCGA-13-0887 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0891 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0897         TCGA-13-0900         TCGA-13-0901 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0910         TCGA-13-0911 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-0912         TCGA-13-0913         TCGA-13-0919 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1404         TCGA-13-1405         TCGA-13-1409 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1412         TCGA-13-1482 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1488         TCGA-13-1489         TCGA-13-1491 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1492         TCGA-13-1495         TCGA-13-1497 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1506 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1507         TCGA-13-1509         TCGA-13-1511 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-1512         TCGA-13-2057         TCGA-13-2059 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-13-2060         TCGA-13-2061         TCGA-13-2071 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1614         TCGA-24-1930         TCGA-61-2101 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
D39V5, multiclass
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  I                  0                 16
  II                 1                 25
  III                8                417
  IV                 0                 82
D39V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      0    9
  22Q GAIN WILD-TYPE    3  542
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 0                  3
  YES                9                542
D39V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      6    3
  22Q GAIN WILD-TYPE  444  101
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 6                444
  YES                3                101

Clustering(40) Variable = Xq gain mutation analysis
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED    11  22
  XQ GAIN WILD-TYPE 252 263
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               33               515 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               22               263 
$`XQ GAIN MUTATED`
TCGA-04-1351 TCGA-04-1655 TCGA-09-2043 TCGA-09-2045 TCGA-10-0927 TCGA-10-0933 
       65.46        45.34         6.15        35.15        81.47        11.70 
TCGA-10-0936 TCGA-13-0717 TCGA-13-0720 TCGA-13-0751 TCGA-13-0797 TCGA-13-0804 
       35.80        24.59        44.55        55.17         8.71        35.28 
TCGA-13-0921 TCGA-13-0923 TCGA-13-1505 TCGA-13-2060 TCGA-20-0987 TCGA-20-1687 
        4.64         6.41         4.21         8.58        23.05         2.66 
TCGA-23-1109 TCGA-23-1114 TCGA-23-1809 TCGA-24-1474 TCGA-25-1319 TCGA-25-1320 
       51.35        68.68         0.53        22.19        65.00        36.95 
TCGA-25-1329 TCGA-25-1633 TCGA-25-1871 TCGA-25-2397 TCGA-29-1691 TCGA-57-1586 
        2.96        60.59        24.99        12.00        47.18        22.32 
TCGA-59-2372 TCGA-61-1900 TCGA-61-2612 
       44.78         5.79         6.35 

$`XQ GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       63.98        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 
       28.64        64.64        36.23        31.86        47.70        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
        6.12         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 
       20.91        26.93        12.46        54.31        25.91        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 
       33.24        32.28         3.88        35.41        15.12        19.86 
TCGA-13-0714 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
        6.21        39.58         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       17.79         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       28.70        30.35        19.56         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
        8.19        43.82        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       82.88        52.44        73.55        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 
       14.24        12.23        10.78         8.75         6.28        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
        2.93        47.54        42.51        40.54        15.39        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       24.95       115.89        87.48        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        0.76         6.25         6.02         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
       17.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        1.18        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       39.88        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       10.26        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
        8.32         3.48         3.72         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       33.96         2.99        12.00        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 
        0.36        20.58         7.86         0.30        56.94        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       51.22        14.93        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
        1.02        38.04         3.02        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        5.36        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
        4.87        42.25        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       51.91        36.26         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       29.06        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       25.74        27.85        24.23        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
        2.24        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
       16.14        11.47        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.46         7.63        24.03        11.38        21.14         1.74 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 
      116.12         9.40        34.39         2.14         5.39        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 
       33.67        43.69         1.41         8.42        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        9.07        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88        31.07         8.58 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.53              0.26 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            81.47            180.16 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            24.59             28.47 
[1] "0.5 - 81.5 (24.6)"  "0.3 - 180.2 (28.5)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D40V2, continuous
D40V3, multiclass
                    clus
vv                   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           33               517
  PERITONEUM (OVARY)               0                 2
D40V4, continuous
D40V5, multiclass
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  I                 1                15
  II                1                25
  III              27               398
  IV                4                78
D40V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      0   33
  XQ GAIN WILD-TYPE    3  518
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                0                 3
  YES              33               518
D40V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     26    7
  XQ GAIN WILD-TYPE  424   97
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO               26               424
  YES               7                97

Clustering(41) Variable = 1p loss mutation analysis
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    14  18
  1P LOSS WILD-TYPE 249 267
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               32               516 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               18               267 
$`1P LOSS MUTATED`
TCGA-04-1351 TCGA-04-1362 TCGA-04-1638 TCGA-09-1672 TCGA-10-0928 TCGA-10-0935 
       65.46        44.32        55.40         5.85        18.48        35.41 
TCGA-13-0905 TCGA-13-1409 TCGA-13-1477 TCGA-13-1489 TCGA-20-1682 TCGA-20-1687 
       47.84         6.84        54.61        82.88        27.48         2.66 
TCGA-23-1022 TCGA-23-2643 TCGA-23-2645 TCGA-24-0982 TCGA-24-1103 TCGA-24-1423 
       42.51         4.70         4.50        22.32        54.08         6.25 
TCGA-24-1424 TCGA-24-2020 TCGA-25-1316 TCGA-25-1632 TCGA-25-2396 TCGA-25-2408 
        6.02       151.99        37.02        56.94         3.02        30.97 
TCGA-29-1768 TCGA-30-1853 TCGA-30-1859 TCGA-30-1860 TCGA-36-2540 TCGA-61-1727 
       31.23        36.26        48.07        44.91        23.80        18.54 
TCGA-61-2012 TCGA-61-2101 
       30.64        55.50 

$`1P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       63.98        49.28        32.52        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       29.06        84.20        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
       17.98         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 
       33.24        32.28        11.70         3.88        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       11.18        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 TCGA-13-1482 
        5.92         4.70         4.21         5.33        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 
       29.39        98.04        20.68        22.39        70.82        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       12.23         8.58        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       25.94        26.20        72.20        25.38        19.07        16.67 
TCGA-20-1686 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
        2.93        47.54        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       54.51         3.22        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 
       58.13         0.53        24.95       115.89        87.48        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       77.00        49.84         2.76         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       21.80        41.56         7.66        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 
        6.38         7.82         7.99         7.86         0.76         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       43.53         8.55        72.92        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
        9.11         3.42         1.18        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       58.09        88.50        70.62        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       45.50        47.70        25.87        10.26        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       88.34        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.81         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1317 
       53.26         1.02        26.93        31.99        51.06         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        7.86         0.30        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
       38.04        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       29.00        26.96        78.87        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       38.53         0.79        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       34.62        17.00        85.68        66.77        62.93        39.09 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 
       22.98        24.36        22.52        17.29        12.36        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       12.30        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
       86.17        65.00        62.47        45.11         4.87        42.25 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 
       11.84        11.47         9.76        38.07        51.91         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       15.68         0.26        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       30.05        25.74        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2542 
       33.01        29.49        29.79        25.91        25.08        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
        2.24        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
       16.14        11.47        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.46         7.63        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 
       44.78        11.11         8.05        20.94        31.40        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       42.48        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       30.61        39.85         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.77        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       65.49         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88         6.35        31.07         8.58 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             2.66              0.26 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           151.99            180.16 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           33.320            27.865 
[1] "2.7 - 152.0 (33.3)" "0.3 - 180.2 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D41V2, continuous
D41V3, multiclass
                    clus
vv                   1P LOSS MUTATED 1P LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           34               516
  PERITONEUM (OVARY)               0                 2
D41V4, continuous
D41V5, multiclass
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  I                 1                15
  II                2                24
  III              23               402
  IV                6                76
D41V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      1   33
  1P LOSS WILD-TYPE    2  518
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                1                 2
  YES              33               518
D41V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     26    8
  1P LOSS WILD-TYPE  424   96
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO               26               424
  YES               8                96

Clustering(42) Variable = 1q loss mutation analysis
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED     9  11
  1Q LOSS WILD-TYPE 254 274
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               20               528 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               11               274 
$`1Q LOSS MUTATED`
TCGA-04-1351 TCGA-04-1362 TCGA-10-0928 TCGA-13-0905 TCGA-13-1489 TCGA-20-1682 
       65.46        44.32        18.48        47.84        82.88        27.48 
TCGA-23-1022 TCGA-23-1109 TCGA-23-2643 TCGA-23-2645 TCGA-24-1103 TCGA-24-1424 
       42.51        51.35         4.70         4.50        54.08         6.02 
TCGA-24-2020 TCGA-25-1632 TCGA-29-1768 TCGA-30-1853 TCGA-30-1859 TCGA-30-1860 
      151.99        56.94        31.23        36.26        48.07        44.91 
TCGA-61-1727 TCGA-61-2012 
       18.54        30.64 

$`1Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       63.98        49.28        32.52        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        6.15         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       25.91        81.47        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       35.41        35.80        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       44.55        39.58         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       17.79        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 
       56.15        57.07        19.36        47.38        48.33        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.61         7.36         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       98.04        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 
        4.14         2.56         3.88         3.09        14.24        12.23 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
        8.58        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       26.20        72.20        25.38        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
        2.66        47.54        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1110 
       49.41         8.81        29.10        18.87         2.24        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
       49.84         2.76         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       41.56         7.66        22.32        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       18.67        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
        4.87        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 
        0.36        20.58         7.86         0.30        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 TCGA-29-1770 
       85.68        66.77        62.93        39.09        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
        9.76        38.07        51.91         2.47        15.68         0.26 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       11.47        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.63        24.03        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 
       11.11         8.05        20.94        31.40        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       13.02         9.07        34.13        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       48.92        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
        1.97         5.52        14.50        17.98         3.98        30.61 
TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       39.85         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88         6.35        31.07         8.58 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             4.50              0.26 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           151.99            180.16 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           43.415            27.765 
[1] "4.5 - 152.0 (43.4)" "0.3 - 180.2 (27.8)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D42V2, continuous
D42V3, multiclass
                    clus
vv                   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           22               528
  PERITONEUM (OVARY)               0                 2
D42V4, continuous
D42V5, multiclass
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  I                 1                15
  II                2                24
  III              15               410
  IV                2                80
D42V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      1   21
  1Q LOSS WILD-TYPE    2  530
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                1                 2
  YES              21               530
D42V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED     14    8
  1Q LOSS WILD-TYPE  436   96
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO               14               436
  YES               8                96

Clustering(43) Variable = 2p loss mutation analysis
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED    11  15
  2P LOSS WILD-TYPE 252 270
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               26               522 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               15               270 
$`2P LOSS MUTATED`
TCGA-04-1362 TCGA-04-1517 TCGA-09-1673 TCGA-13-0723 TCGA-13-0890 TCGA-13-0891 
       44.32        19.99         3.02        39.58        67.99        69.01 
TCGA-13-0904 TCGA-13-0916 TCGA-13-1494 TCGA-20-1682 TCGA-24-1464 TCGA-24-1614 
       48.33        21.14        38.17        27.48        12.46        48.33 
TCGA-24-1847 TCGA-24-1930 TCGA-24-2020 TCGA-24-2260 TCGA-25-1313 TCGA-25-2392 
       11.28        81.11       151.99        36.16        26.93         1.02 
TCGA-29-1688 TCGA-29-1693 TCGA-29-1770 TCGA-30-1853 TCGA-36-2543 TCGA-61-2016 
       78.87       101.75        24.36        36.26         2.24         1.18 
TCGA-61-2087 TCGA-61-2109 
        4.80        20.68 

$`2P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 
       63.98        65.46        49.28        32.52        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 
       71.47        82.36        56.55        41.59        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       30.48        17.98         5.85         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       35.41        35.80        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       44.55         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       61.81        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       34.06        29.98        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        73.55        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 
       23.05        25.94        26.20        72.20        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        6.38        39.09        33.47        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       17.23        90.15        88.34        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         3.81         4.37         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2023 
       22.65        30.21        16.41        11.05         4.87        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 
       28.18        64.01        44.48        57.07         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 
       18.05        85.05        13.02        49.05        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 
       12.00        45.01        19.99        42.02         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 
       30.97        26.96        44.71        47.18        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
        9.76        38.07        51.91         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       30.05        25.74        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
       21.60        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
       16.14        11.47        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.46         7.63        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       37.02        42.48        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2017 TCGA-61-2018 
        3.98        30.61        39.85        30.64        45.96        45.40 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.77        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 
       65.49        55.50         6.48        76.83        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88         6.35        31.07         8.58 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             1.02              0.26 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           151.99            180.16 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            31.82             28.26 
[1] "1.0 - 152.0 (31.8)" "0.3 - 180.2 (28.3)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D43V2, continuous
D43V3, multiclass
                    clus
vv                   2P LOSS MUTATED 2P LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           26               524
  PERITONEUM (OVARY)               0                 2
D43V4, continuous
D43V5, multiclass
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  I                 1                15
  II                1                25
  III              18               407
  IV                6                76
D43V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      0   26
  2P LOSS WILD-TYPE    3  525
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                0                 3
  YES              26               525
D43V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED     22    4
  2P LOSS WILD-TYPE  428  100
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO               22               428
  YES               4               100

Clustering(44) Variable = 2q loss mutation analysis
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED    13  17
  2Q LOSS WILD-TYPE 250 268
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               518 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               17               268 
$`2Q LOSS MUTATED`
TCGA-04-1349 TCGA-04-1517 TCGA-09-1673 TCGA-13-0723 TCGA-13-0890 TCGA-13-0891 
       21.57        19.99         3.02        39.58        67.99        69.01 
TCGA-13-0904 TCGA-13-0916 TCGA-13-1494 TCGA-20-1682 TCGA-24-1464 TCGA-24-1614 
       48.33        21.14        38.17        27.48        12.46        48.33 
TCGA-24-1847 TCGA-24-1930 TCGA-24-2020 TCGA-24-2260 TCGA-25-1313 TCGA-25-1635 
       11.28        81.11       151.99        36.16        26.93        51.22 
TCGA-25-2392 TCGA-29-1688 TCGA-29-1693 TCGA-29-1770 TCGA-30-1853 TCGA-30-1887 
        1.02        78.87       101.75        24.36        36.26        24.26 
TCGA-36-1575 TCGA-36-2529 TCGA-36-2543 TCGA-61-2016 TCGA-61-2087 TCGA-61-2109 
        8.55        35.05         2.24         1.18         4.80        20.68 

$`2Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       18.51        11.87        65.49        63.06        48.76        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 
       71.47        82.36        56.55        41.59        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       30.48        17.98         5.85         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       35.41        35.80        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       44.55         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       61.81        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       34.06        29.98        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        73.55        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 
       23.05        25.94        26.20        72.20        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        6.38        39.09        33.47        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       17.23        90.15        88.34        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         3.81         4.37         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2023 
       22.65        30.21        16.41        11.05         4.87        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 
       28.18        64.01        44.48        57.07         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
       56.94        60.59        35.54        14.93        24.99        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       85.05        13.02        49.05        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       26.96        44.71        47.18        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
       31.17        68.28         0.53        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       18.25        41.95        29.23        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 
       66.77        62.93        39.09        31.23        22.98        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       17.29        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       45.11         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       38.07        51.91         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       21.53        22.85        22.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.23        24.69        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       25.08        23.80        21.60        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       14.17         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       31.40        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        1.41         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96        45.40         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       58.39        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       44.52       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             1.02              0.26 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           151.99            180.16 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           27.205            28.405 
[1] "1.0 - 152.0 (27.2)" "0.3 - 180.2 (28.4)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D44V2, continuous
D44V3, multiclass
                    clus
vv                   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           29               521
  PERITONEUM (OVARY)               1                 1
D44V4, continuous
D44V5, multiclass
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  I                 1                15
  II                0                26
  III              22               403
  IV                7                75
D44V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      0   30
  2Q LOSS WILD-TYPE    3  521
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                0                 3
  YES              30               521
D44V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED     23    7
  2Q LOSS WILD-TYPE  427   97
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO               23               427
  YES               7                97

Clustering(45) Variable = 3p loss mutation analysis
D45V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED    29  27
  3P LOSS WILD-TYPE 234 258
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               56               492 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               27               258 
$`3P LOSS MUTATED`
TCGA-04-1346 TCGA-04-1347 TCGA-04-1351 TCGA-04-1356 TCGA-04-1365 TCGA-04-1514 
       65.49        63.06        65.46        49.28        76.54        56.55 
TCGA-04-1530 TCGA-04-1542 TCGA-09-0369 TCGA-09-2050 TCGA-09-2053 TCGA-10-0938 
      119.08        84.20        35.54        71.11        39.75        19.86 
TCGA-13-0730 TCGA-13-0757 TCGA-13-0792 TCGA-13-0890 TCGA-13-0905 TCGA-13-1408 
       17.79        11.18        36.72        67.99        47.84         5.92 
TCGA-13-1409 TCGA-13-1411 TCGA-13-1487 TCGA-13-1492 TCGA-13-1512 TCGA-13-2057 
        6.84         4.21        22.39        73.55         3.09        14.24 
TCGA-23-1024 TCGA-23-1032 TCGA-23-1114 TCGA-24-0968 TCGA-24-0970 TCGA-24-1417 
       15.39         2.24        68.68        19.63        11.64         7.82 
TCGA-24-1464 TCGA-24-1548 TCGA-24-1550 TCGA-24-1846 TCGA-24-1930 TCGA-24-2027 
       12.46        16.21        41.06         4.37        81.11       109.68 
TCGA-24-2288 TCGA-24-2293 TCGA-25-1312 TCGA-25-1633 TCGA-25-1870 TCGA-29-1693 
        0.82        16.64         1.02        60.59        14.93       101.75 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1777 TCGA-30-1855 TCGA-30-1887 TCGA-36-1575 
       66.77        62.93        12.30         2.47        24.26         8.55 
TCGA-36-2530 TCGA-42-2589 TCGA-57-1992 TCGA-59-2363 TCGA-61-1733 TCGA-61-1917 
       33.01         7.56        28.96         5.39        31.76        43.43 
TCGA-61-2012 TCGA-61-2016 
       30.64         1.18 

$`3P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 
       18.51        11.87        48.76        21.57        63.98        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 
       44.32        33.67        71.47        82.36        41.59        19.99 
TCGA-04-1525 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       38.37        29.06        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
        9.47        57.73        17.95         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-09-2054 
        6.12        35.15         4.50       112.37        63.09        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
       26.93        12.46        54.31        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       33.24        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       15.12         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 
       12.39        31.07        15.19        55.17         2.47        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       38.93        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 
       70.39        61.81        69.01        43.36        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 
       57.07        19.36        47.38        48.33        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       13.81         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1410 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        7.36         6.05         4.70         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1489 
       61.71        29.39        98.04        20.68        70.82        82.88 
TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       52.44        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2059 TCGA-13-2060 
        4.77         4.14         2.56         3.88        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       72.20        27.48        25.38        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 
        2.66        47.54        42.51        40.54        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 
       49.41         8.81        29.10        18.87        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
        3.22        31.20         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
        4.27         6.38        39.09        33.47        58.13         0.53 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       24.95       115.89        87.48        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0975 TCGA-24-0979 
        2.76         4.70         4.50         7.63        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        6.38         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1466 TCGA-24-1467 
       18.67        43.53         8.55        72.92        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
        9.11         3.42         1.18        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1549 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       64.27        56.58        51.91        41.39        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       70.62        39.88        19.53        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 
       38.24         8.32         3.48         3.72         3.81        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       11.05         4.87       151.99        44.84        58.16        34.82 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 
       70.45        44.58        67.36        36.23        33.11        55.86 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
       53.26        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 TCGA-25-1635 TCGA-25-1871 
        7.86         0.30        56.94        35.54        51.22        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       18.05        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       38.53         0.79        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       34.62        17.00        85.68        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 
       24.36        22.52        17.29        12.36        11.84        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 
        9.76        38.07        51.91        36.26        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       57.57        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 
       29.06        21.53        22.85        22.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2532 TCGA-36-2534 
       27.85        24.23        24.69        35.05        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       18.31        20.52        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
       14.30         9.07         9.44         7.46         7.63        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 
       11.38        21.14         1.74        22.32        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        2.14        44.78        11.11         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       18.54        27.88         4.34        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 
       37.02        42.48        48.92        56.58        67.73        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.61        39.85        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88         6.35        31.07         8.58 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.82              0.26 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           119.08            180.16 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            26.61             28.26 
[1] "0.8 - 119.1 (26.6)" "0.3 - 180.2 (28.3)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D45V2, continuous
D45V3, multiclass
                    clus
vv                   3P LOSS MUTATED 3P LOSS WILD-TYPE
  OMENTUM                          1                 1
  OVARY                           57               493
  PERITONEUM (OVARY)               0                 2
D45V4, continuous
D45V5, multiclass
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  I                 2                14
  II                4                22
  III              43               382
  IV                7                75
D45V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      1   57
  3P LOSS WILD-TYPE    2  494
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO                1                 2
  YES              57               494
D45V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     44   14
  3P LOSS WILD-TYPE  406   90
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               44               406
  YES              14                90

Clustering(46) Variable = 3q loss mutation analysis
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    14   8
  3Q LOSS WILD-TYPE 249 277
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               22               526 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                8               277 
$`3Q LOSS MUTATED`
TCGA-04-1351 TCGA-04-1514 TCGA-09-0369 TCGA-09-2050 TCGA-10-0938 TCGA-13-0890 
       65.46        56.55        35.54        71.11        19.86        67.99 
TCGA-13-0905 TCGA-13-1408 TCGA-13-1492 TCGA-13-1512 TCGA-23-1024 TCGA-23-1032 
       47.84         5.92        73.55         3.09        15.39         2.24 
TCGA-24-1550 TCGA-24-1846 TCGA-24-2027 TCGA-24-2288 TCGA-24-2293 TCGA-29-1763 
       41.06         4.37       109.68         0.82        16.64        66.77 
TCGA-29-1777 TCGA-36-1575 TCGA-42-2589 TCGA-61-2012 
       12.30         8.55         7.56        30.64 

$`3Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       63.98        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       71.47        82.36        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
        9.47        57.73        17.95         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-09-2053 
        6.12        35.15         4.50       112.37        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       35.80        15.12         6.21        24.59        44.55        39.58 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
        2.73        12.39        31.07        15.19        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
        2.47        11.18        11.38        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       30.35        19.56         8.71         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 
        4.41         4.77         4.14         2.56         3.88        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       12.23         8.58        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       25.94        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
       51.35        54.51         3.22        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 
       33.30        86.01       129.96         4.27         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       33.47        58.13         0.53        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       18.67        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1551 TCGA-24-1552 
       57.37        64.27        16.21        56.58        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       58.09        88.50        70.62        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       45.50        47.70        25.87        10.26        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       88.34        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        3.81        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       30.21        16.41        11.05        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       44.84        58.16        34.82        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 
        0.36        47.54        31.63        70.45        44.58        67.36 
TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       36.23        33.11        55.86        53.26         1.02        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       18.05        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 
       29.23        34.62        17.00        85.68        62.93        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       31.23        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1776 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       11.84        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
       86.17        65.00        62.47        45.11         4.87        42.25 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       11.84        11.47         9.76        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.85        22.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       20.52        14.17         6.05        16.14        11.47        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.07         9.44         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       31.40        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        1.41         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 
       14.50        17.98         3.98        30.61        39.85         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.82              0.26 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           109.68            180.16 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            25.25             28.26 
[1] "0.8 - 109.7 (25.2)" "0.3 - 180.2 (28.3)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D46V2, continuous
D46V3, multiclass
                    clus
vv                   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  OMENTUM                          1                 1
  OVARY                           22               528
  PERITONEUM (OVARY)               0                 2
D46V4, continuous
D46V5, multiclass
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  I                 1                15
  II                3                23
  III              15               410
  IV                3                79
D46V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      1   22
  3Q LOSS WILD-TYPE    2  529
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                1                 2
  YES              22               529
D46V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     18    5
  3Q LOSS WILD-TYPE  432   99
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO               18               432
  YES               5                99

Clustering(47) Variable = 4p loss mutation analysis
D47V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED   112 136
  4P LOSS WILD-TYPE 151 149
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              248               300 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              136               149 
$`4P LOSS MUTATED`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1338 TCGA-04-1343 TCGA-04-1348 TCGA-04-1350 
       40.24        41.00        46.62        11.87        48.76        63.98 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       32.52        44.32        82.36        56.55        41.59        19.99 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 TCGA-04-1651 
       29.06        84.20        55.40        48.89        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 
       31.86        47.70        45.34         9.47        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1669 TCGA-09-1670 TCGA-09-2043 
        9.96        38.43        89.33        30.48        17.98         6.15 
TCGA-09-2044 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        6.12       112.37        71.11        63.09        39.75        20.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 TCGA-10-0935 TCGA-13-0717 
       81.47        18.48        33.24        11.70        35.41        24.59 
TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       12.39        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0760 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0793 TCGA-13-0795 
       11.54        32.25        31.04        21.40        28.70        19.56 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0885 TCGA-13-0887 
        8.28        43.82        35.28        35.28        91.40        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 
       61.81        67.99        56.15        57.07        47.38        48.33 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0921 TCGA-13-0924 TCGA-13-1403 
       37.08        27.68        34.06         4.64         6.08        10.88 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1487 TCGA-13-1489 
        6.05         5.92         6.84         4.70        22.39        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 
       52.44        73.55        49.22        54.31        37.61        13.97 
TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 TCGA-20-0990 
        4.14         3.88         3.09        12.23        10.78        25.94 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       27.48        25.38        19.07         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       42.51        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1122 
        3.22        31.20        33.30        86.01       129.96        39.09 
TCGA-23-1123 TCGA-23-2072 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-24-0970 
       33.47        24.95        49.84         2.76         4.70        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 
       21.80        41.56        22.32        54.08        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 
        6.38         7.82         7.99         0.76         5.95         5.36 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1463 TCGA-24-1470 TCGA-24-1471 TCGA-24-1548 
       19.17        18.67        72.92         3.42         1.18        16.21 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1560 TCGA-24-1562 TCGA-24-1567 
       51.91        41.39        88.50        44.09        45.50        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1845 TCGA-24-1846 
       90.15        88.34        38.24         8.32         3.81         4.37 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 
       22.65        30.21        81.11       151.99        44.84       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2254 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       14.43        53.95        57.07        47.54        31.63        70.45 
TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2298 TCGA-25-1314 TCGA-25-1316 
        0.82        36.23        16.64        53.26        31.99        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1627 
        1.02        34.98         2.99        12.00        18.58         0.36 
TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1871 TCGA-25-2400 TCGA-25-2404 
        0.30        60.59        35.54        24.99        42.02        29.00 
TCGA-29-1688 TCGA-29-1695 TCGA-29-1697 TCGA-29-1699 TCGA-29-1705 TCGA-29-1762 
       78.87         0.79        31.17         0.53        18.25        85.68 
TCGA-29-1763 TCGA-29-1768 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       66.77        31.23        12.30         8.35         7.20         5.36 
TCGA-29-2428 TCGA-29-2434 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1859 
       45.11        11.47        38.07        36.26        15.68        48.07 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1891 TCGA-31-1950 TCGA-31-1953 
       34.78        36.62        57.57        30.05        18.77         6.71 
TCGA-31-1955 TCGA-31-1959 TCGA-36-1568 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       42.51         2.17        28.73        25.74        24.23        24.69 
TCGA-36-2532 TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-36-2548 
       29.49        25.08        21.60         2.24        18.31        14.17 
TCGA-36-2551 TCGA-42-2587 TCGA-42-2588 TCGA-42-2591 TCGA-57-1584 TCGA-57-1992 
       16.14         9.07         9.44         7.63        21.14        28.96 
TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1730 
       22.32        34.39         2.14         5.39        44.78         4.34 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1740 TCGA-61-1895 TCGA-61-1899 
       28.47        48.79        44.84         2.43         1.41         8.42 
TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1913 TCGA-61-1914 
        5.79        13.02         9.07        34.13        48.92        56.58 
TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 TCGA-61-2003 TCGA-61-2016 TCGA-61-2018 
       43.43        38.17         1.97         3.98         1.18        45.40 
TCGA-61-2087 TCGA-61-2094 TCGA-61-2101 TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 
        4.80        71.74        55.50        20.68        44.52        22.22 
TCGA-61-2610 TCGA-61-2613 
       51.91        31.07 

$`4P LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 
        1.81        49.15         2.01        18.51        65.49        63.06 
TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       21.57        65.46        49.28        33.67        76.54        71.47 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1646 TCGA-04-1648 TCGA-09-0364 TCGA-09-0366 
       38.37       119.08        27.88        28.64        29.16        57.73 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1672 
       74.89        41.59        57.57        61.87        55.36         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2045 TCGA-09-2048 TCGA-09-2055 
        3.02         8.55        97.55        35.15         4.50        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 
       12.46        54.31        25.91        32.28         3.88        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       15.12        19.86         6.21        44.55        39.58         2.73 
TCGA-13-0726 TCGA-13-0758 TCGA-13-0761 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       31.07        11.38        34.06         8.42        38.93        36.72 
TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0807 
       30.35         8.71         7.79         8.12         8.19        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 TCGA-13-0888 TCGA-13-0891 TCGA-13-0893 
       68.91       107.18        74.27        70.39        69.01        43.36 
TCGA-13-0897 TCGA-13-0901 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0913 
       57.47        19.36        47.84        44.94        44.84        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-1404 TCGA-13-1405 
       21.14        14.89        13.81         6.41         6.61         7.36 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1494 TCGA-13-1496 TCGA-13-1499 
       98.04        20.68        70.82        38.17         4.24        38.37 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1510 
       32.84        16.57         4.21         4.41         4.77         2.56 
TCGA-13-2057 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 
       14.24         8.58         8.75         6.28        23.05        26.20 
TCGA-20-0996 TCGA-20-1685 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       72.20        16.67        40.54        15.39        26.83        31.73 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1114 TCGA-23-1116 TCGA-23-1120 TCGA-23-1121 
       51.35        54.51        68.68         4.57         4.27         6.38 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       58.13         0.53       115.89        87.48        91.66        77.00 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0980 TCGA-24-1104 TCGA-24-1419 
        4.50         7.63        19.63         7.66        63.55         7.86 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1435 
        6.25         6.02         4.80        17.36        28.34        43.53 
TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 
        8.55        12.46        45.14       105.99         9.11        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1553 
       26.96        57.37        64.27        56.58        41.06        58.09 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       70.62        39.88        19.53        47.70        25.87        10.26 
TCGA-24-1614 TCGA-24-1843 TCGA-24-1844 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
       48.33         3.48         3.72        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2024 TCGA-24-2026 
        9.80        16.41        11.05         4.87        58.16        34.82 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 
       18.48        28.18        64.01        44.48        36.16         0.79 
TCGA-24-2262 TCGA-24-2281 TCGA-24-2289 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 
        0.36        44.58        67.36        33.11        55.86         1.02 
TCGA-25-1313 TCGA-25-1315 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1329 
       26.93        51.06        65.00        36.95        33.96         2.96 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1632 TCGA-25-1635 
       18.02        15.78        20.58         7.86        56.94        51.22 
TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       14.93        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 
       38.04         3.02        12.00        45.01        19.99         2.96 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       30.97        26.96        44.71        47.18       101.75        38.53 
TCGA-29-1696 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 
       33.70        68.28        16.90        18.64        59.67        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 
       29.23        34.62        17.00        62.93        39.09        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 
       24.36        22.52        17.29        12.36        11.84        14.93 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 
       34.62        86.17        65.00        62.47         4.87        42.25 
TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1857 TCGA-30-1860 
       11.84         9.76        51.91         2.47         0.26        44.91 
TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        6.08         1.18        24.26        48.79        45.57        30.18 
TCGA-31-1951 TCGA-31-1956 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 
       22.45        44.09        29.06        21.53        22.85        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-2529 TCGA-36-2530 TCGA-36-2534 
        8.55        30.05        27.85        35.05        33.01        29.79 
TCGA-36-2537 TCGA-36-2540 TCGA-36-2544 TCGA-36-2547 TCGA-36-2549 TCGA-36-2552 
       25.91        23.80        20.98        20.52         6.05        11.47 
TCGA-42-2582 TCGA-42-2589 TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 
       14.30         7.56         7.46        24.03        11.38         1.74 
TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2351 
       22.32        25.05        25.02       180.16        80.12       116.12 
TCGA-59-2352 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
        9.40        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1733 TCGA-61-1738 TCGA-61-1741 TCGA-61-1743 TCGA-61-1901 
       27.88        31.76        35.80        33.67        43.69        11.41 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1915 TCGA-61-1918 TCGA-61-1998 
       31.30        37.02        42.48        67.73        15.75         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2017 
       14.50        17.98        30.61        39.85        30.64        45.96 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
        4.77        51.72        61.64        58.39        60.62        65.49 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2111 TCGA-61-2611 TCGA-61-2612 TCGA-61-2614 
        6.48        76.83       125.72        15.88         6.35         8.58 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.30              0.26 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           151.99            180.16 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           28.980            27.405 
[1] "0.3 - 152.0 (29.0)" "0.3 - 180.2 (27.4)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D47V2, continuous
D47V3, multiclass
                    clus
vv                   4P LOSS MUTATED 4P LOSS WILD-TYPE
  OMENTUM                          2                 0
  OVARY                          249               301
  PERITONEUM (OVARY)               0                 2
D47V4, continuous
D47V5, multiclass
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  I                 8                 8
  II                8                18
  III             193               232
  IV               39                43
D47V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      2  249
  4P LOSS WILD-TYPE    1  302
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO                2                 1
  YES             249               302
D47V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED    204   47
  4P LOSS WILD-TYPE  246   57
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO              204               246
  YES              47                57

Clustering(48) Variable = 4q loss mutation analysis
D48V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED   134 154
  4Q LOSS WILD-TYPE 129 131
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              288               260 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              154               131 
$`4Q LOSS MUTATED`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1348 
       40.24        41.00        49.15        46.62        11.87        48.76 
TCGA-04-1350 TCGA-04-1361 TCGA-04-1362 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       63.98        32.52        44.32        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       41.59        19.99        29.06        84.20        55.40        48.89 
TCGA-04-1649 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0367 TCGA-09-0369 
       64.64        31.86        47.70        45.34        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1669 
        9.96        38.43        89.33        74.89        57.57        30.48 
TCGA-09-1670 TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 TCGA-09-2049 TCGA-09-2050 
       17.98         8.55         6.15         6.12       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0926 
       63.09        39.75        20.91        26.93        12.46        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 TCGA-10-0935 TCGA-10-0937 
       81.47        18.48        33.24        11.70        35.41        15.12 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
       24.59        44.55        12.39        15.19        17.79        55.17 
TCGA-13-0757 TCGA-13-0760 TCGA-13-0762 TCGA-13-0766 TCGA-13-0793 TCGA-13-0795 
       11.18        11.54        32.25        21.40        28.70        19.56 
TCGA-13-0797 TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0885 
        8.71         8.28        43.82        35.28        35.28        91.40 
TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0899 TCGA-13-0903 TCGA-13-0904 
       66.64        61.81        67.99        56.15        47.38        48.33 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0921 TCGA-13-0924 
       37.08        27.68        34.06        21.14         4.64         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
       10.88         6.61         6.05         5.92         6.84         4.70 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1497 
       22.39        82.88        52.44        73.55        49.22        54.31 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 
       38.37        13.97         4.14         3.88         3.09        12.23 
TCGA-13-2061 TCGA-20-0990 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 
       10.78        25.94        25.38        19.07         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       47.54        42.51        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 
        2.24        54.51         3.22        31.20        68.68        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2084 
       86.01       129.96        39.09        33.47        24.95        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 
        2.76         4.70        11.64        21.80        41.56        22.32 
TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       54.08        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1431 
        7.86         0.76         6.25         5.95         5.36        19.17 
TCGA-24-1434 TCGA-24-1463 TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 
       18.67        72.92         3.42         1.18        26.96        57.37 
TCGA-24-1548 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1560 TCGA-24-1562 
       16.21        51.91        41.39        88.50        44.09        45.50 
TCGA-24-1563 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 
       47.70        17.23        90.15        88.34        38.24         8.32 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1928 
        3.81         4.37         5.75         9.80        22.65        11.05 
TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       81.11       151.99        44.84       109.68        14.43        53.95 
TCGA-24-2254 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2288 TCGA-24-2290 
       57.07        47.54        31.63        70.45         0.82        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1314 
       16.64        33.11        55.86        53.26         1.02        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1322 TCGA-25-1323 
       51.06        37.02         1.02        34.98         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 
        2.96        18.58        18.02         0.36         7.86         0.30 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 
       60.59        35.54        14.93        24.99        13.02        49.05 
TCGA-25-2400 TCGA-25-2404 TCGA-25-2408 TCGA-29-1688 TCGA-29-1695 TCGA-29-1697 
       42.02        29.00        30.97        78.87         0.79        31.17 
TCGA-29-1698 TCGA-29-1705 TCGA-29-1762 TCGA-29-1763 TCGA-29-1769 TCGA-29-1776 
       68.28        18.25        85.68        66.77        22.98        11.84 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-2428 TCGA-29-2434 
       12.30         8.35         7.20         5.36        45.11        11.47 
TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1859 TCGA-30-1861 TCGA-30-1866 
       38.07        36.26        15.68        48.07        34.78        36.62 
TCGA-30-1880 TCGA-30-1891 TCGA-31-1946 TCGA-31-1950 TCGA-31-1953 TCGA-31-1955 
       57.57        30.05        30.18        18.77         6.71        42.51 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1570 TCGA-36-1571 TCGA-36-1577 TCGA-36-1580 
        2.17        28.73        21.53        22.85        25.74        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2538 TCGA-36-2543 
       24.69        35.05        33.01        29.49        25.08         2.24 
TCGA-36-2545 TCGA-36-2548 TCGA-36-2551 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
       18.31        14.17        16.14         9.07         9.44         7.56 
TCGA-42-2591 TCGA-57-1584 TCGA-57-1992 TCGA-59-2350 TCGA-59-2355 TCGA-59-2363 
        7.63        21.14        28.96        22.32         2.14         5.39 
TCGA-59-2372 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       44.78         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 
        2.43        33.67         8.42         5.79        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       34.13        31.30        56.58        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-2003 TCGA-61-2009 TCGA-61-2016 TCGA-61-2018 TCGA-61-2087 
        1.97         3.98        39.85         1.18        45.40         4.80 
TCGA-61-2094 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       71.74        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2610 TCGA-61-2613 TCGA-61-2614 
       20.68        44.52        22.22        51.91        31.07         8.58 

$`4Q LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 
        1.81         2.01        18.51        65.49        63.06        21.57 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1364 TCGA-04-1365 TCGA-04-1525 TCGA-04-1530 
       65.46        49.28        33.67        76.54        38.37       119.08 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1651 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       27.88        28.64        36.23        29.16         9.47        57.73 
TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 
       41.59        61.87        55.36         5.85         3.02        97.55 
TCGA-09-2045 TCGA-09-2048 TCGA-10-0925 TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 
       35.15         4.50        54.31        32.28         3.88        35.80 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0723 TCGA-13-0724 TCGA-13-0726 TCGA-13-0755 
       19.86         6.21        39.58         2.73        31.07         2.47 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       11.38        34.06        31.04         8.42        38.93        36.72 
TCGA-13-0794 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0807 TCGA-13-0883 
       30.35         7.79         8.12         8.19        13.61        68.91 
TCGA-13-0884 TCGA-13-0886 TCGA-13-0888 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
      107.18        74.27        70.39        69.01        43.36        57.47 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0913 
       57.07        19.36        47.84        44.94        44.84        29.98 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-1405 TCGA-13-1411 TCGA-13-1412 
       14.89        13.81         6.41         7.36         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1488 TCGA-13-1494 TCGA-13-1496 TCGA-13-1498 TCGA-13-1501 TCGA-13-1504 
       70.82        38.17         4.24        37.61        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1510 TCGA-13-2057 TCGA-13-2060 
        4.21         4.41         4.77         2.56        14.24         8.58 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        8.75         6.28        23.05        26.20        72.20        27.48 
TCGA-20-1685 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1109 
       16.67        40.54        15.39        26.83        31.73        51.35 
TCGA-23-1116 TCGA-23-1120 TCGA-23-1121 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 
        4.57         4.27         6.38        58.13         0.53       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       87.48        91.66        77.00         4.50         7.63        19.63 
TCGA-24-0980 TCGA-24-1104 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        7.66        63.55         6.02         4.80        17.36        28.34 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
       43.53         8.55        12.46        45.14       105.99         9.11 
TCGA-24-1474 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1553 TCGA-24-1556 
       22.19        64.27        56.58        41.06        58.09        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1564 TCGA-24-1565 TCGA-24-1614 TCGA-24-1843 
       39.88        19.53        25.87        10.26        48.33         3.48 
TCGA-24-1844 TCGA-24-1847 TCGA-24-1850 TCGA-24-1924 TCGA-24-1927 TCGA-24-2019 
        3.72        11.28         5.49        30.21        16.41         4.87 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       58.16        34.82        18.48        28.18        64.01        44.48 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2281 TCGA-24-2289 TCGA-25-1313 
       36.16         0.79         0.36        44.58        67.36        26.93 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1626 TCGA-25-1628 TCGA-25-1632 
       65.00        36.95        33.96        15.78        20.58        56.94 
TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       51.22        18.05        85.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2409 TCGA-29-1690 
       12.00        45.01        19.99         2.96        26.96        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1699 TCGA-29-1701 
       47.18       101.75        38.53        33.70         0.53        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       18.64        59.67        41.95        29.23        34.62        17.00 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       62.93        39.09        31.23        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1778 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
       12.36        14.93        34.62        86.17        65.00        62.47 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 
        4.87        42.25        11.84         9.76        51.91         2.47 
TCGA-30-1857 TCGA-30-1860 TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 
        0.26        44.91         6.08         1.18        24.26        48.79 
TCGA-31-1944 TCGA-31-1951 TCGA-31-1956 TCGA-36-1569 TCGA-36-1574 TCGA-36-1575 
       45.57        22.45        44.09        29.06        22.55         8.55 
TCGA-36-1576 TCGA-36-1578 TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 
       30.05        27.85        29.79        25.91        23.80        21.60 
TCGA-36-2544 TCGA-36-2547 TCGA-36-2549 TCGA-36-2552 TCGA-42-2582 TCGA-42-2590 
       20.98        20.52         6.05        11.47        14.30         7.46 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 
       24.03        11.38         1.74        22.32        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-61-1721 
      180.16        80.12       116.12         9.40        34.39        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1738 
        8.05        20.94        31.40        18.54        27.88        35.80 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1901 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       43.69         1.41        11.41        37.02        42.48        48.92 
TCGA-61-1915 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2012 
       67.73         5.52        14.50        17.98        30.61        30.64 
TCGA-61-2017 TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2111 
       45.96         4.77        51.72        61.64        58.39       125.72 
TCGA-61-2611 TCGA-61-2612 
       15.88         6.35 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.30              0.26 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           151.99            180.16 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           28.715            27.880 
[1] "0.3 - 152.0 (28.7)" "0.3 - 180.2 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
[1] "hr=" "1.1"
D48V2, continuous
D48V3, multiclass
                    clus
vv                   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  OMENTUM                          2                 0
  OVARY                          289               261
  PERITONEUM (OVARY)               1                 1
D48V4, continuous
D48V5, multiclass
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  I                 9                 7
  II               10                16
  III             230               195
  IV               39                43
D48V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      2  290
  4Q LOSS WILD-TYPE    1  261
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                2                 1
  YES             290               261
D48V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED    240   52
  4Q LOSS WILD-TYPE  210   52
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO              240               210
  YES              52                52

Clustering(49) Variable = 5p loss mutation analysis
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED    32  49
  5P LOSS WILD-TYPE 231 236
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               81               467 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               49               236 
$`5P LOSS MUTATED`
TCGA-04-1332 TCGA-04-1336 TCGA-04-1338 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 
       41.00        49.15        46.62        65.46        49.28        32.52 
TCGA-04-1371 TCGA-04-1517 TCGA-04-1648 TCGA-09-0364 TCGA-09-0365 TCGA-09-1669 
       82.36        19.99        28.64        29.16         9.47        30.48 
TCGA-09-2044 TCGA-09-2049 TCGA-10-0938 TCGA-13-0714 TCGA-13-0761 TCGA-13-0803 
        6.12       112.37        19.86         6.21        34.06        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0885 TCGA-13-0893 TCGA-13-0920 TCGA-13-1405 
       35.28        35.28        91.40        43.36        13.81         7.36 
TCGA-13-1412 TCGA-13-1491 TCGA-13-1496 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        5.33        52.44         4.24        14.24        12.23         8.58 
TCGA-20-1683 TCGA-23-1022 TCGA-23-1028 TCGA-23-1109 TCGA-23-1114 TCGA-23-1123 
       25.38        42.51        49.41        51.35        68.68        33.47 
TCGA-23-2072 TCGA-24-1430 TCGA-24-1431 TCGA-24-1466 TCGA-24-1548 TCGA-24-1558 
       24.95        28.34        19.17        45.14        16.21        19.53 
TCGA-24-1567 TCGA-24-1614 TCGA-24-1843 TCGA-24-1920 TCGA-24-2019 TCGA-24-2254 
       17.23        48.33         3.48         9.80         4.87        57.07 
TCGA-24-2261 TCGA-24-2271 TCGA-24-2293 TCGA-25-1312 TCGA-25-1313 TCGA-25-1317 
        0.79        31.63        16.64         1.02        26.93         1.02 
TCGA-25-1323 TCGA-25-1633 TCGA-25-1635 TCGA-25-2398 TCGA-25-2400 TCGA-29-1702 
       12.00        60.59        51.22        45.01        42.02        18.64 
TCGA-29-1711 TCGA-29-1762 TCGA-29-1778 TCGA-29-1783 TCGA-29-2414 TCGA-30-1855 
       34.62        85.68        14.93         7.20        86.17         2.47 
TCGA-30-1859 TCGA-30-1861 TCGA-30-1867 TCGA-31-1953 TCGA-31-1959 TCGA-36-1575 
       48.07        34.78         1.18         6.71         2.17         8.55 
TCGA-36-2547 TCGA-59-2348 TCGA-59-2352 TCGA-61-1743 TCGA-61-1906 TCGA-61-1907 
       20.52       180.16         9.40        43.69        34.13        31.30 
TCGA-61-1998 TCGA-61-2102 TCGA-61-2104 
        5.52         6.48        76.83 

$`5P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 
       40.24         1.81         2.01        18.51        11.87        65.49 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1362 TCGA-04-1364 
       63.06        48.76        21.57        63.98        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 
       76.54        71.47        56.55        41.59        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1649 
       29.06        84.20        55.40        48.89        27.88        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 TCGA-09-0367 
       36.23        31.86        47.70        45.34        57.73        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       35.54         9.96        38.43        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       57.57        61.87        55.36        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 
        8.55        97.55         6.15        35.15         4.50        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0717 TCGA-13-0720 
        3.88        35.41        35.80        15.12        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0762 
       55.17         2.47        11.18        11.38        11.54        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       30.35        19.56         8.71         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 
        8.19        13.61        68.91       107.18        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 
       70.39        61.81        67.99        69.01        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       57.07        19.36        47.38        48.33        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       14.89         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1477 
        6.05         5.92         6.84         4.70         4.21        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 
       70.82        82.88        73.55        38.17        49.22        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       72.20        27.48        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1029 
       47.54        40.54        15.39        26.83        31.73         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       29.10        18.87         2.24        54.51         3.22        31.20 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 
       39.09        58.13         0.53       115.89        87.48        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       54.08        63.55        47.41         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
        5.36         4.80        17.36        18.67        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       72.92        12.46       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 
       22.19        26.96        57.37        64.27        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 
       44.09        45.50        47.70        25.87        10.26        90.15 
TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       88.34        38.24         8.32         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
       11.28         5.75         5.49        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       11.05        81.11       151.99        44.84        58.16        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
      109.68        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2260 TCGA-24-2262 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 
       44.48        36.16         0.36        47.54        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
        0.82        67.36        36.23        33.11        55.86        53.26 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
       31.99        51.06        37.02        34.98        65.00        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       33.96         2.99         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 
        0.36        20.58         7.86         0.30        56.94        35.54 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       14.93        24.99        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 
        1.02        38.04         3.02        12.00        19.99         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
        0.53        16.90        59.67        18.25        41.95        29.23 
TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       17.00        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        8.35         5.36        34.62        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
        4.87        42.25        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1862 
       51.91        36.26        15.68         0.26        44.91         6.08 
TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
       36.62        57.57        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 
       30.18        18.77        22.45        42.51        44.09        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 
       29.06        21.53        22.85        22.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       20.98        18.31        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.30         9.07         9.44         7.56         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2354 
       25.05        25.02        80.12        22.32       116.12        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       31.40        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 
       48.79        44.84        35.80         2.43        33.67         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1910 
        8.42         5.79        11.41        13.02         9.07        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       42.48        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
       38.17         1.97        14.50        17.98         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.77        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
       65.49        55.50        20.68        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       51.91        15.88         6.35        31.07         8.58 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.79              0.26 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           180.16            151.99 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            28.64             27.88 
[1] "0.8 - 180.2 (28.6)" "0.3 - 152.0 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D49V2, continuous
D49V3, multiclass
                    clus
vv                   5P LOSS MUTATED 5P LOSS WILD-TYPE
  OMENTUM                          1                 1
  OVARY                           81               469
  PERITONEUM (OVARY)               0                 2
D49V4, continuous
D49V5, multiclass
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  I                 0                16
  II                5                21
  III              64               361
  IV               11                71
D49V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      0   82
  5P LOSS WILD-TYPE    3  469
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                0                 3
  YES              82               469
D49V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     66   16
  5P LOSS WILD-TYPE  384   88
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO               66               384
  YES              16                88

Clustering(50) Variable = 5q loss mutation analysis
D50V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    78  87
  5Q LOSS WILD-TYPE 185 198
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              165               383 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               87               198 
$`5Q LOSS MUTATED`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1338 TCGA-04-1350 TCGA-04-1351 
       40.24        41.00        49.15        46.62        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1371 TCGA-04-1517 TCGA-04-1648 TCGA-04-1649 
       49.28        32.52        82.36        19.99        28.64        64.64 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0369 TCGA-09-1669 TCGA-09-2043 
       29.16         9.47        57.73        35.54        30.48         6.15 
TCGA-09-2044 TCGA-09-2049 TCGA-09-2054 TCGA-10-0927 TCGA-10-0938 TCGA-13-0714 
        6.12       112.37        20.91        81.47        19.86         6.21 
TCGA-13-0717 TCGA-13-0723 TCGA-13-0730 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 
       24.59        39.58        17.79        11.54        34.06        31.04 
TCGA-13-0766 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0802 TCGA-13-0803 
       21.40        38.93        28.70        30.35         8.19        43.82 
TCGA-13-0804 TCGA-13-0885 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 
       35.28        91.40        67.99        69.01        43.36        56.15 
TCGA-13-0901 TCGA-13-0904 TCGA-13-0906 TCGA-13-0916 TCGA-13-0920 TCGA-13-1405 
       19.36        48.33        44.94        21.14        13.81         7.36 
TCGA-13-1407 TCGA-13-1411 TCGA-13-1412 TCGA-13-1491 TCGA-13-1496 TCGA-13-1497 
        6.05         4.21         5.33        52.44         4.24        54.31 
TCGA-13-1505 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-20-0990 TCGA-20-1684 
        4.21        14.24        12.23         8.58        25.94        19.07 
TCGA-20-1686 TCGA-23-1022 TCGA-23-1028 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 
        2.93        42.51        49.41        29.10         2.24        51.35 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1119 TCGA-23-1122 
       54.51        31.20        68.68        86.01       129.96        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2643 TCGA-24-1419 
       33.47        58.13        24.95       115.89         4.70         7.86 
TCGA-24-1424 TCGA-24-1430 TCGA-24-1431 TCGA-24-1466 TCGA-24-1467 TCGA-24-1548 
        6.02        28.34        19.17        45.14       105.99        16.21 
TCGA-24-1549 TCGA-24-1558 TCGA-24-1567 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 
       56.58        19.53        17.23        48.33        38.24         3.48 
TCGA-24-1924 TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 TCGA-24-2030 TCGA-24-2254 
       30.21         4.87       151.99        34.82        53.95        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2271 TCGA-24-2280 TCGA-24-2293 TCGA-24-2295 
       36.16         0.79        31.63        70.45        16.64        33.11 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1317 TCGA-25-1321 TCGA-25-1322 
        1.02        26.93        51.06         1.02        33.96         2.99 
TCGA-25-1323 TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2396 
       12.00        60.59        51.22        14.93        24.99         3.02 
TCGA-25-2398 TCGA-25-2400 TCGA-25-2404 TCGA-29-1695 TCGA-29-1701 TCGA-29-1702 
       45.01        42.02        29.00         0.79        16.90        18.64 
TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1775 TCGA-29-1778 
       34.62        85.68        62.93        39.09        12.36        14.93 
TCGA-29-1783 TCGA-29-1784 TCGA-29-2428 TCGA-30-1718 TCGA-30-1855 TCGA-30-1859 
        7.20         5.36        45.11        51.91         2.47        48.07 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-31-1953 TCGA-31-1955 
       34.78        36.62         1.18        24.26         6.71        42.51 
TCGA-31-1959 TCGA-36-1575 TCGA-36-2537 TCGA-36-2538 TCGA-36-2547 TCGA-57-1582 
        2.17         8.55        25.91        25.08        20.52        24.03 
TCGA-57-1583 TCGA-57-1992 TCGA-57-1994 TCGA-59-2348 TCGA-59-2351 TCGA-59-2352 
       11.38        28.96        25.02       180.16       116.12         9.40 
TCGA-61-1724 TCGA-61-1728 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1906 
       20.94        27.88        43.69         1.41         8.42        34.13 
TCGA-61-1907 TCGA-61-1917 TCGA-61-1998 TCGA-61-2008 TCGA-61-2012 TCGA-61-2088 
       31.30        43.43         5.52        30.61        30.64         4.77 
TCGA-61-2097 TCGA-61-2102 TCGA-61-2104 
       60.62         6.48        76.83 

$`5Q LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
        1.81         2.01        18.51        11.87        65.49        63.06 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       48.76        21.57        44.32        33.67        76.54        71.47 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 
       56.55        41.59        38.37       119.08        29.06        84.20 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       55.40        48.89        27.88        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       45.34        17.95         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 
       41.59        57.57        61.87        55.36        17.98         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 
        3.02         8.55        97.55        35.15         4.50        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       63.09        39.75        26.93        12.46        54.31        25.91 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       35.80        15.12        44.55         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0762 
       15.19        55.17         2.47        11.18        11.38        32.25 
TCGA-13-0768 TCGA-13-0792 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
        8.42        36.72        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 
        8.28        35.28        13.61        68.91       107.18        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 
       66.64        70.39        61.81        57.47        57.07        47.38 
TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       47.84        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       14.89         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        5.92         6.84         4.70        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       29.39        98.04        20.68        22.39        70.82        82.88 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       73.55        38.17        49.22        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       32.84        16.57         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
        3.88         3.09        10.78         8.75         6.28        23.05 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-20-1687 
       26.20        72.20        27.48        25.38        16.67         2.66 
TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1029 
       47.54        40.54        15.39        26.83        31.73         8.81 
TCGA-23-1031 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1120 TCGA-23-1121 
       18.87         3.22         4.57        33.30         4.27         6.38 
TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
        0.53        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 
        6.38         7.82         7.99         0.76         6.25         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
        5.36         4.80        17.36        18.67        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       72.92        12.46         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       26.96        57.37        64.27        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 
       58.09        88.50        70.62        39.88        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 TCGA-24-1842 
       47.70        25.87        10.26        90.15        88.34         8.32 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2023 
        9.80        22.65        16.41        11.05        81.11        44.84 
TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
       58.16       109.68        14.43        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2262 TCGA-24-2267 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       44.48         0.36        47.54        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2297 TCGA-24-2298 TCGA-25-1314 TCGA-25-1316 TCGA-25-1318 
       36.23        55.86        53.26        31.99        37.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       65.00        36.95         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 
        0.36        20.58         7.86         0.30        56.94        35.54 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       18.05        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       12.00        19.99         2.96        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       44.71        47.18       101.75        38.53        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       68.28         0.53        59.67        18.25        41.95        29.23 
TCGA-29-1761 TCGA-29-1763 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       17.00        66.77        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1785 TCGA-29-2414 
       17.29        11.84        12.30         8.35        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       65.00        62.47         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 
        9.76        38.07        36.26        15.68         0.26        44.91 
TCGA-30-1862 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        6.08        57.57        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       18.77        22.45        44.09        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.85        22.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2540 
       24.69        35.05        33.01        29.49        29.79        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 
       21.60         2.24        20.98        18.31        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 
       16.14        11.47        14.30         9.07         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 
        7.46         7.63        21.14         1.74        22.32        25.05 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
       80.12        22.32        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 
       11.11         8.05        31.40        18.54         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1910 TCGA-61-1911 
        5.79        11.41        13.02         9.07        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       48.92        56.58        67.73        15.75        38.17         1.97 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 
       14.50        17.98         3.98        39.85         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
       45.40         4.80        51.72        71.74        61.64        58.39 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
       65.49        55.50        20.68        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       51.91        15.88         6.35        31.07         8.58 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.79              0.26 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           180.16            125.72 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            30.21             26.93 
[1] "0.8 - 180.2 (30.2)" "0.3 - 125.7 (26.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
D50V3, multiclass
                    clus
vv                   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          165               385
  PERITONEUM (OVARY)               1                 1
D50V4, continuous
D50V5, multiclass
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  I                 2                14
  II                8                18
  III             133               292
  IV               20                62
D50V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      1  166
  5Q LOSS WILD-TYPE    2  385
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                1                 2
  YES             166               385
D50V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED    128   39
  5Q LOSS WILD-TYPE  322   65
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO              128               322
  YES              39                65

Clustering(51) Variable = 6p loss mutation analysis
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    61  57
  6P LOSS WILD-TYPE 202 228
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              118               430 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               57               228 
$`6P LOSS MUTATED`
TCGA-04-1348 TCGA-04-1367 TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-09-0365 
       48.76        71.47        27.88        64.64        36.23         9.47 
TCGA-09-1659 TCGA-09-1670 TCGA-09-1672 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        9.96        17.98         5.85        97.55         6.15         6.12 
TCGA-09-2053 TCGA-09-2056 TCGA-10-0926 TCGA-13-0720 TCGA-13-0730 TCGA-13-0758 
       39.75        12.46        25.91        44.55        17.79        11.38 
TCGA-13-0766 TCGA-13-0801 TCGA-13-0803 TCGA-13-0883 TCGA-13-0884 TCGA-13-0887 
       21.40         8.28        43.82        68.91       107.18        66.64 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0900 TCGA-13-0905 TCGA-13-0910 
       67.99        69.01        57.47        57.07        47.84        37.08 
TCGA-13-0911 TCGA-13-0921 TCGA-13-1405 TCGA-13-1410 TCGA-13-1483 TCGA-13-1491 
       27.68         4.64         7.36         4.70        29.39        52.44 
TCGA-13-1495 TCGA-13-1497 TCGA-13-1501 TCGA-13-1506 TCGA-13-1512 TCGA-13-2059 
       49.22        54.31        32.84         4.41         3.09        12.23 
TCGA-20-1683 TCGA-23-1021 TCGA-23-1030 TCGA-23-1113 TCGA-23-1118 TCGA-23-1123 
       25.38        47.54        29.10        31.20        86.01        33.47 
TCGA-23-2072 TCGA-23-2078 TCGA-24-0966 TCGA-24-0970 TCGA-24-1416 TCGA-24-1426 
       24.95        87.48         7.63        11.64         6.38         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 TCGA-24-1467 TCGA-24-1471 
        4.80        17.36        18.67        43.53       105.99         1.18 
TCGA-24-1546 TCGA-24-1552 TCGA-24-1553 TCGA-24-1560 TCGA-24-1923 TCGA-24-1927 
       64.27        41.39        58.09        44.09        22.65        16.41 
TCGA-24-2019 TCGA-24-2027 TCGA-24-2271 TCGA-24-2280 TCGA-24-2293 TCGA-24-2297 
        4.87       109.68        31.63        70.45        16.64        55.86 
TCGA-24-2298 TCGA-25-1315 TCGA-25-1316 TCGA-25-1320 TCGA-25-1322 TCGA-25-1329 
       53.26        51.06        37.02        36.95         2.99         2.96 
TCGA-25-1635 TCGA-29-1688 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       51.22        78.87       101.75        38.53        33.70        31.17 
TCGA-29-1707 TCGA-29-1763 TCGA-29-1775 TCGA-29-1781 TCGA-29-1784 TCGA-29-2428 
       41.95        66.77        12.36         8.35         5.36        45.11 
TCGA-30-1714 TCGA-30-1853 TCGA-30-1859 TCGA-30-1866 TCGA-30-1880 TCGA-31-1951 
       38.07        36.26        48.07        36.62        57.57        22.45 
TCGA-36-2543 TCGA-36-2547 TCGA-36-2548 TCGA-42-2588 TCGA-42-2591 TCGA-59-2350 
        2.24        20.52        14.17         9.44         7.63        22.32 
TCGA-59-2351 TCGA-61-1724 TCGA-61-1727 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
      116.12        20.94        18.54        31.76        28.47        48.79 
TCGA-61-1740 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1913 TCGA-61-1995 
        2.43         9.07        34.13        37.02        48.92         1.97 
TCGA-61-2008 TCGA-61-2096 TCGA-61-2110 TCGA-61-2613 
       30.61        58.39        44.52        31.07 

$`6P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 
       18.51        11.87        65.49        63.06        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1652 
       29.06        84.20        55.40        48.89        28.64        31.86 
TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       47.70        45.34        29.16        57.73        17.95        35.54 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1673 TCGA-09-1674 TCGA-09-2045 TCGA-09-2048 
       55.36        30.48         3.02         8.55        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 
      112.37        71.11        63.09        20.91        26.93        54.31 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       35.41        35.80        15.12        19.86         6.21        24.59 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 
       39.58         2.73        12.39        31.07        15.19        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
        2.47        11.18        11.54        34.06        32.25        31.04 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 
        8.71         7.79         8.12         8.19        35.28        35.28 
TCGA-13-0807 TCGA-13-0885 TCGA-13-0886 TCGA-13-0888 TCGA-13-0889 TCGA-13-0893 
       13.61        91.40        74.27        70.39        61.81        43.36 
TCGA-13-0899 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 
       56.15        19.36        47.38        48.33        44.94        44.84 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 
       34.06        29.98        21.14        14.89        13.81         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
        6.08        10.88         6.61         6.05         5.92         6.84 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 
        4.21         5.33        54.61        87.06        61.71        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1492 TCGA-13-1494 
       20.68        22.39        70.82        82.88        73.55        38.17 
TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1504 TCGA-13-1505 
        4.24        37.61        38.37        13.97        16.57         4.21 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 TCGA-13-2060 
        4.77         4.14         2.56         3.88        14.24         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       72.20        27.48        19.07        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
        8.81        18.87         2.24        51.35        54.51         3.22 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
       68.68         4.57        33.30       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 
       39.09        58.13         0.53       115.89        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0968 TCGA-24-0975 
       49.84         2.76         4.70         4.50        19.63        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.31         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 TCGA-24-1463 
        6.02         5.95        28.34        19.17         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 
       12.46        45.14         9.11         3.42        22.19        26.96 
TCGA-24-1545 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1555 
       57.37        16.21        56.58        41.06        51.91        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       70.62        39.88        19.53        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       10.26        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
        8.32         3.48         3.72         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 
        5.75         5.49         9.80        30.21        11.05        81.11 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 
      151.99        44.84        58.16        34.82        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
        0.79         0.36        47.54        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2295 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1317 
       36.23        33.11         1.02        26.93        31.99         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 
       34.98        65.00        33.96        12.00        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       15.78         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       60.59        35.54        14.93        24.99        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 
       26.96        44.71        47.18         0.79        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 
       16.90        18.64        59.67        18.25        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       17.00        85.68        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       24.36        22.52        17.29        11.84        12.30        14.93 
TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 
        7.20        34.62        86.17        65.00        62.47         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 
       42.25        11.84        11.47         9.76        51.91         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 
       15.68         0.26        44.91        34.78         6.08         1.18 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 
       29.79        25.91        25.08        23.80        21.60        20.98 
TCGA-36-2545 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       18.31         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2589 TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.56         7.46        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1737 TCGA-61-1738 
        8.05        31.40        27.88         4.34        44.84        35.80 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1907 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       13.02        31.30        42.48        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       15.75        38.17         5.52        14.50        17.98         3.98 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 
        4.77        51.72        71.74        61.64        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2111 TCGA-61-2113 
       55.50         6.48        76.83        20.68       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2614 
       51.91        15.88         6.35         8.58 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             1.18              0.26 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           116.12            180.16 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           31.695            26.880 
[1] "1.2 - 116.1 (31.7)" "0.3 - 180.2 (26.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D51V2, continuous
D51V3, multiclass
                    clus
vv                   6P LOSS MUTATED 6P LOSS WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          119               431
  PERITONEUM (OVARY)               0                 2
D51V4, continuous
D51V5, multiclass
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  I                 6                10
  II                5                21
  III              91               334
  IV               16                66
D51V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      1  119
  6P LOSS WILD-TYPE    2  432
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                1                 2
  YES             119               432
D51V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     97   23
  6P LOSS WILD-TYPE  353   81
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO               97               353
  YES              23                81

Clustering(52) Variable = 6q loss mutation analysis
D52V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    86 100
  6Q LOSS WILD-TYPE 177 185
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              186               362 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              100               185 
$`6Q LOSS MUTATED`
TCGA-04-1337 TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1367 TCGA-04-1517 
        2.01        48.76        63.98        65.46        71.47        19.99 
TCGA-04-1525 TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-09-0365 TCGA-09-0367 
       38.37        27.88        64.64        36.23         9.47        17.95 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1670 TCGA-09-1672 TCGA-09-1675 TCGA-09-2043 
        9.96        38.43        17.98         5.85        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
        6.12        35.15        39.75        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0935 TCGA-13-0717 TCGA-13-0726 TCGA-13-0751 
       25.91        81.47        35.41        24.59        31.07        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0762 TCGA-13-0766 TCGA-13-0793 
        2.47        11.18        11.38        32.25        21.40        28.70 
TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0883 TCGA-13-0884 
        7.79         8.28         8.19        43.82        68.91       107.18 
TCGA-13-0887 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       66.64        67.99        69.01        57.47        56.15        57.07 
TCGA-13-0905 TCGA-13-0910 TCGA-13-0911 TCGA-13-0919 TCGA-13-0921 TCGA-13-1404 
       47.84        37.08        27.68        14.89         4.64         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1410 TCGA-13-1411 TCGA-13-1482 TCGA-13-1483 
        7.36         6.05         4.70         4.21        61.71        29.39 
TCGA-13-1491 TCGA-13-1495 TCGA-13-1497 TCGA-13-1501 TCGA-13-1506 TCGA-13-1512 
       52.44        49.22        54.31        32.84         4.41         3.09 
TCGA-13-2059 TCGA-20-1683 TCGA-23-1021 TCGA-23-1027 TCGA-23-1030 TCGA-23-1109 
       12.23        25.38        47.54        31.73        29.10        51.35 
TCGA-23-1113 TCGA-23-1118 TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 TCGA-23-2084 
       31.20        86.01        33.47        24.95        87.48        49.84 
TCGA-24-0966 TCGA-24-0970 TCGA-24-0980 TCGA-24-0982 TCGA-24-1105 TCGA-24-1416 
        7.63        11.64         7.66        22.32        47.41         6.38 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 TCGA-24-1467 
        5.36         4.80        17.36        18.67        43.53       105.99 
TCGA-24-1471 TCGA-24-1546 TCGA-24-1552 TCGA-24-1553 TCGA-24-1560 TCGA-24-1562 
        1.18        64.27        41.39        58.09        44.09        45.50 
TCGA-24-1845 TCGA-24-1923 TCGA-24-1927 TCGA-24-2019 TCGA-24-2261 TCGA-24-2262 
        3.81        22.65        16.41         4.87         0.79         0.36 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
       31.63        70.45        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1320 
       53.26        51.06        37.02         1.02        34.98        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1634 TCGA-25-2042 
       33.96         2.99        12.00         2.96        35.54        13.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2409 TCGA-29-1688 TCGA-29-1693 TCGA-29-1694 
       12.00        45.01        26.96        78.87       101.75        38.53 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1707 TCGA-29-1762 TCGA-29-1763 TCGA-29-1768 
       33.70        31.17        41.95        85.68        66.77        31.23 
TCGA-29-1771 TCGA-29-1775 TCGA-29-1781 TCGA-29-1784 TCGA-29-2428 TCGA-29-2432 
       22.52        12.36         8.35         5.36        45.11        11.84 
TCGA-30-1714 TCGA-30-1853 TCGA-30-1857 TCGA-30-1859 TCGA-30-1866 TCGA-30-1880 
       38.07        36.26         0.26        48.07        36.62        57.57 
TCGA-31-1951 TCGA-31-1953 TCGA-36-1571 TCGA-36-1574 TCGA-36-1580 TCGA-36-2542 
       22.45         6.71        22.85        22.55        24.23        21.60 
TCGA-36-2543 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-42-2588 TCGA-42-2589 
        2.24        18.31        20.52        14.17         9.44         7.56 
TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-59-2350 TCGA-59-2351 TCGA-59-2355 
        7.63        11.38        21.14        22.32       116.12         2.14 
TCGA-59-2372 TCGA-61-1724 TCGA-61-1727 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       44.78        20.94        18.54        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1740 TCGA-61-1899 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
       44.84         2.43         8.42        13.02         9.07        34.13 
TCGA-61-1910 TCGA-61-1913 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 TCGA-61-2002 
       37.02        48.92        15.75         1.97         5.52        17.98 
TCGA-61-2008 TCGA-61-2096 TCGA-61-2104 TCGA-61-2110 TCGA-61-2613 TCGA-61-2614 
       30.61        58.39        76.83        44.52        31.07         8.58 

$`6Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81        49.15        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 TCGA-04-1356 TCGA-04-1361 
       11.87        65.49        63.06        21.57        49.28        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       44.32        33.67        76.54        82.36        56.55        41.59 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
      119.08        29.06        84.20        55.40        48.89        28.64 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0366 TCGA-09-0369 
       31.86        47.70        45.34        29.16        57.73        35.54 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1673 TCGA-09-1674 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       30.48         3.02         8.55         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2054 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       63.09        20.91        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 
        3.88        35.80        15.12        19.86         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0760 
       39.58         2.73        12.39        15.19        17.79        11.54 
TCGA-13-0761 TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0794 
       34.06        31.04         8.42        38.93        36.72        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0800 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
       19.56         8.71         8.12        35.28        35.28        13.61 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0888 TCGA-13-0889 TCGA-13-0893 TCGA-13-0901 
       91.40        74.27        70.39        61.81        43.36        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 TCGA-13-0912 TCGA-13-0913 
       47.38        48.33        44.94        44.84        34.06        29.98 
TCGA-13-0916 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1408 
       21.14        13.81         6.41         6.08        10.88         5.92 
TCGA-13-1409 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 
        6.84         5.33        54.61        87.06        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 
       22.39        70.82        82.88        73.55        38.17         4.24 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 
       37.61        38.37        13.97        16.57         4.21         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
        4.14         2.56         3.88        14.24         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 
       27.48        19.07        16.67         2.93         2.66        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1028 TCGA-23-1029 TCGA-23-1031 
       40.54        15.39        26.83        49.41         8.81        18.87 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
        2.24        54.51         3.22        68.68         4.57        33.30 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 TCGA-23-1809 
      129.96         4.27         6.38        39.09        58.13         0.53 
TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
      115.89        91.66        77.00         2.76         4.70         4.50 
TCGA-24-0968 TCGA-24-0975 TCGA-24-0979 TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 
       19.63        21.80        41.56        54.08        63.55         6.31 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
        5.95        28.34        19.17         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
       45.14         9.11         3.42        22.19        26.96        57.37 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1555 TCGA-24-1556 
       16.21        56.58        41.06        51.91        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       39.88        19.53        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       30.21        11.05        81.11       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2267 TCGA-24-2281 
       64.01        44.48        57.07        36.16        47.54        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1319 
        0.82        67.36         1.02        26.93        31.99        65.00 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
        0.30        56.94        60.59        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       18.05        85.05        49.05         1.02        38.04         3.02 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-29-1690 
       19.99        42.02         2.96        29.00        30.97        44.71 
TCGA-29-1691 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       47.18         0.79        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1764 
       59.67        18.25        29.23        34.62        17.00        62.93 
TCGA-29-1766 TCGA-29-1769 TCGA-29-1770 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 
       39.09        22.98        24.36        17.29        11.84        12.30 
TCGA-29-1778 TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
       14.93         7.20        34.62        86.17        65.00        62.47 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 
        4.87        42.25        11.47         9.76        51.91         2.47 
TCGA-30-1856 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 
       15.68        44.91        34.78         6.08         1.18        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1955 
       30.05        48.79        45.57        30.18        18.77        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1575 
       44.09         2.17        28.73        29.06        21.53         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       30.05        25.74        27.85        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2544 
       29.49        29.79        25.91        25.08        23.80        20.98 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2590 
        6.05        16.14        11.47        14.30         9.07         7.46 
TCGA-57-1582 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       24.03         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 TCGA-61-1721 
      180.16        80.12         9.40        34.39         5.39        11.11 
TCGA-61-1722 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1738 TCGA-61-1741 
        8.05        31.40        27.88         4.34        35.80        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1907 TCGA-61-1911 
       43.69         1.41         5.79        11.41        31.30        42.48 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1919 TCGA-61-2000 TCGA-61-2003 
       56.58        67.73        43.43        38.17        14.50         3.98 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 
        4.77        51.72        71.74        61.64        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2109 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       55.50         6.48        20.68       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 
       15.88         6.35 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.26              0.30 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           116.12            180.16 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           28.585            28.030 
[1] "0.3 - 116.1 (28.6)" "0.3 - 180.2 (28.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, multiclass
                    clus
vv                   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  OMENTUM                          2                 0
  OVARY                          186               364
  PERITONEUM (OVARY)               0                 2
D52V4, continuous
D52V5, multiclass
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  I                 8                 8
  II                6                20
  III             144               281
  IV               28                54
D52V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      1  187
  6Q LOSS WILD-TYPE    2  364
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                1                 2
  YES             187               364
D52V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED    153   35
  6Q LOSS WILD-TYPE  297   69
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO              153               297
  YES              35                69

Clustering(53) Variable = 7p loss mutation analysis
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED    35  55
  7P LOSS WILD-TYPE 228 230
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               90               458 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               55               230 
$`7P LOSS MUTATED`
TCGA-04-1338 TCGA-04-1347 TCGA-04-1349 TCGA-04-1362 TCGA-04-1536 TCGA-04-1638 
       46.62        63.06        21.57        44.32        29.06        55.40 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1666 TCGA-09-1669 TCGA-10-0928 TCGA-10-0931 
       35.54         9.96        57.57        30.48        18.48        32.28 
TCGA-10-0935 TCGA-10-0938 TCGA-13-0751 TCGA-13-0792 TCGA-13-0890 TCGA-13-0897 
       35.41        19.86        55.17        36.72        67.99        57.47 
TCGA-13-1487 TCGA-13-1497 TCGA-13-1505 TCGA-13-2061 TCGA-20-1685 TCGA-23-1029 
       22.39        54.31         4.21        10.78        16.67         8.81 
TCGA-23-1109 TCGA-23-1122 TCGA-23-2078 TCGA-23-2084 TCGA-23-2641 TCGA-24-0982 
       51.35        39.09        87.48        49.84         2.76        22.32 
TCGA-24-1105 TCGA-24-1417 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1434 
       47.41         7.82         5.95         5.36         4.80        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1469 TCGA-24-1546 TCGA-24-1548 
       43.53        72.92        12.46         9.11        64.27        16.21 
TCGA-24-1562 TCGA-24-1567 TCGA-24-1843 TCGA-24-1846 TCGA-24-1847 TCGA-24-1930 
       45.50        17.23         3.48         4.37        11.28        81.11 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2298 TCGA-25-1317 TCGA-25-1321 
       57.07        36.16         0.36        53.26         1.02        33.96 
TCGA-25-1630 TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-2042 TCGA-25-2391 
        7.86        56.94        60.59        51.22        13.02        49.05 
TCGA-25-2396 TCGA-25-2399 TCGA-29-1691 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
        3.02        19.99        47.18        16.90        18.64        59.67 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1766 TCGA-29-1776 TCGA-29-1781 TCGA-29-2414 
       34.62        17.00        39.09        11.84         8.35        86.17 
TCGA-29-2431 TCGA-30-1718 TCGA-30-1855 TCGA-30-1887 TCGA-36-1570 TCGA-36-1574 
       42.25        51.91         2.47        24.26        21.53        22.55 
TCGA-42-2589 TCGA-57-1992 TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 TCGA-61-1724 
        7.56        28.96         9.40        34.39         5.39        20.94 
TCGA-61-1740 TCGA-61-1906 TCGA-61-1913 TCGA-61-2008 TCGA-61-2009 TCGA-61-2096 
        2.43        34.13        48.92        30.61        39.85        58.39 

$`7P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 
       40.24        41.00         1.81        49.15         2.01        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       11.87        65.49        48.76        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       32.52        33.67        76.54        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1542 TCGA-04-1644 
       41.59        19.99        38.37       119.08        84.20        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       27.88        28.64        64.64        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1661 
       45.34        29.16         9.47        57.73        17.95        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 
       89.33        74.89        41.59        61.87        55.36        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 
       33.24        11.70         3.88        35.80        15.12         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       15.19        17.79         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       61.81        69.01        43.36        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        6.05         5.92         6.84         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       70.82        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
        4.24        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       14.24        12.23         8.58         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       25.94        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
        2.93         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       26.83        31.73        49.41        29.10        18.87         2.24 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       54.51         3.22        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 
       86.01       129.96         4.27         6.38        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 TCGA-23-2643 
        0.53        24.95       115.89        91.66        77.00         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 
        7.66        54.08        63.55         6.31         6.38         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1428 TCGA-24-1430 
        7.86         0.76         6.25         6.02        17.36        28.34 
TCGA-24-1431 TCGA-24-1436 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 
       19.17         8.55        45.14       105.99         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       22.19        26.96        57.37        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 
       44.09        47.70        25.87        10.26        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 TCGA-24-1849 
       48.33        38.24         8.32         3.72         3.81         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 
        5.49         9.80        22.65        30.21        16.41        11.05 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2261 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.79        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 
       67.36        36.23        16.64        33.11        55.86         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 
       26.93        31.99        51.06        37.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       36.95         2.99        12.00         2.96        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1634 TCGA-25-1870 
       15.78         0.36        20.58         0.30        35.54        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 
       24.99        18.05        85.05         1.02        38.04        12.00 
TCGA-25-2398 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       45.01        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        44.71       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       31.17        68.28         0.53        18.25        41.95        29.23 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       85.68        66.77        62.93        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 
       22.52        17.29        12.36        12.30        14.93         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
        5.36        34.62        65.00        62.47        45.11         4.87 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 
       11.84        11.47         9.76        38.07        36.26        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 
        0.26        48.07        44.91        34.78         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        1.18        57.57        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       28.73        29.06        22.85         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 
       11.47        14.30         9.07         9.44         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 
       24.03        11.38        21.14         1.74        22.32        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2355 
       25.02       180.16        80.12        22.32       116.12         2.14 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       44.78        11.11         8.05        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1914 
       13.02         9.07        31.30        37.02        42.48        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
       14.50        17.98         3.98        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       44.52       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.36              0.26 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            87.48            180.16 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            29.77             27.88 
[1] "0.4 - 87.5 (29.8)"  "0.3 - 180.2 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D53V2, continuous
D53V3, multiclass
                    clus
vv                   7P LOSS MUTATED 7P LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           89               461
  PERITONEUM (OVARY)               1                 1
D53V4, continuous
D53V5, multiclass
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  I                 2                14
  II                2                24
  III              77               348
  IV                9                73
D53V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      0   90
  7P LOSS WILD-TYPE    3  461
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                0                 3
  YES              90               461
D53V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED     75   15
  7P LOSS WILD-TYPE  375   89
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO               75               375
  YES              15                89

Clustering(54) Variable = 7q loss mutation analysis
D54V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED    18  31
  7Q LOSS WILD-TYPE 245 254
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               49               499 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               31               254 
$`7Q LOSS MUTATED`
TCGA-04-1349 TCGA-04-1362 TCGA-04-1638 TCGA-09-0369 TCGA-09-1659 TCGA-10-0931 
       21.57        44.32        55.40        35.54         9.96        32.28 
TCGA-13-0751 TCGA-13-0792 TCGA-13-0897 TCGA-13-1487 TCGA-13-2061 TCGA-23-1029 
       55.17        36.72        57.47        22.39        10.78         8.81 
TCGA-24-0982 TCGA-24-1417 TCGA-24-1425 TCGA-24-1426 TCGA-24-1434 TCGA-24-1435 
       22.32         7.82         5.95         5.36        18.67        43.53 
TCGA-24-1463 TCGA-24-1469 TCGA-24-1567 TCGA-24-1846 TCGA-24-1847 TCGA-24-2260 
       72.92         9.11        17.23         4.37        11.28        36.16 
TCGA-24-2298 TCGA-25-1317 TCGA-25-1630 TCGA-25-1632 TCGA-25-1633 TCGA-25-2042 
       53.26         1.02         7.86        56.94        60.59        13.02 
TCGA-25-2391 TCGA-25-2396 TCGA-29-1691 TCGA-29-1702 TCGA-29-1703 TCGA-29-1766 
       49.05         3.02        47.18        18.64        59.67        39.09 
TCGA-29-1776 TCGA-29-1781 TCGA-29-2431 TCGA-30-1718 TCGA-30-1855 TCGA-30-1887 
       11.84         8.35        42.25        51.91         2.47        24.26 
TCGA-31-1959 TCGA-36-1577 TCGA-59-2354 TCGA-59-2363 TCGA-61-1724 TCGA-61-2008 
        2.17        25.74        34.39         5.39        20.94        30.61 
TCGA-61-2096 
       58.39 

$`7Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       18.51        11.87        65.49        63.06        48.76        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       65.46        49.28        32.52        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       29.06        84.20        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       57.73        17.95        38.43        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 
       57.57        61.87        55.36        30.48        17.98         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        3.02         8.55        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
       26.93        12.46        54.31        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       33.24        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 
       12.39        31.07        15.19        17.79         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       11.38        11.54        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
        8.42        38.93        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       21.14        14.89        13.81         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       10.88         6.61         7.36         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        4.70         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       29.39        98.04        20.68        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
       12.23         8.58         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
        2.93         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       26.83        31.73        49.41        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
       51.35        54.51         3.22        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 
       33.30        86.01       129.96         4.27         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       33.47        58.13         0.53        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 
       54.08        63.55        47.41         6.31         6.38         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 
        7.86         0.76         6.25         6.02         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       28.34        19.17         8.55        12.46        45.14       105.99 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        3.42         1.18        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       16.21        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       47.70        25.87        10.26        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1849 
       38.24         8.32         3.48         3.72         3.81         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 
        5.49         9.80        22.65        30.21        16.41        11.05 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       81.11         4.87       151.99        44.84        58.16        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
      109.68        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.48        57.07         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       33.11        55.86         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
       37.02        34.98        65.00        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1631 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       20.58         0.30        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 
       18.05        85.05         1.02        38.04        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        44.71       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1705 TCGA-29-1707 
       31.17        68.28         0.53        16.90        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       31.23        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       12.30        14.93         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 
       65.00        62.47        45.11         4.87        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
        9.76        38.07        36.26        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
        6.71        42.51        44.09        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 
       22.85        22.55         8.55        30.05        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       20.52        14.17         6.05        16.14        11.47        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
        9.07         9.44         7.56         7.46         7.63        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       11.38        21.14         1.74        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 
        2.14        44.78        11.11         8.05        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       37.02        42.48        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
        3.98        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 
        4.80         4.77        51.72        71.74        61.64        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       65.49        55.50         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
      125.72        22.22        51.91        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             1.02              0.26 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            72.92            180.16 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            22.39             28.64 
[1] "1.0 - 72.9 (22.4)"  "0.3 - 180.2 (28.6)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D54V2, continuous
D54V3, multiclass
                    clus
vv                   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           48               502
  PERITONEUM (OVARY)               1                 1
D54V4, continuous
D54V5, multiclass
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  I                 1                15
  II                3                23
  III              38               387
  IV                7                75
D54V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1   48
  7Q LOSS WILD-TYPE    2  503
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                 2
  YES              48               503
D54V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     42    7
  7Q LOSS WILD-TYPE  408   97
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO               42               408
  YES               7                97

Clustering(55) Variable = 8p loss mutation analysis
D55V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED   103 121
  8P LOSS WILD-TYPE 160 164
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              224               324 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              121               164 
$`8P LOSS MUTATED`
TCGA-04-1332 TCGA-04-1338 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1361 
       41.00        46.62        65.49        48.76        21.57        32.52 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1530 
       76.54        71.47        82.36        56.55        19.99       119.08 
TCGA-04-1536 TCGA-04-1638 TCGA-04-1646 TCGA-04-1652 TCGA-09-0366 TCGA-09-0367 
       29.06        55.40        27.88        31.86        57.73        17.95 
TCGA-09-1661 TCGA-09-1664 TCGA-09-1668 TCGA-09-1670 TCGA-09-1674 TCGA-09-2050 
       38.43        74.89        55.36        17.98         8.55        71.11 
TCGA-09-2051 TCGA-09-2054 TCGA-09-2056 TCGA-10-0925 TCGA-10-0927 TCGA-10-0928 
       63.09        20.91        12.46        54.31        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0936 TCGA-13-0723 TCGA-13-0725 TCGA-13-0730 
       33.24        32.28        35.80        39.58        12.39        17.79 
TCGA-13-0757 TCGA-13-0761 TCGA-13-0762 TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 
       11.18        34.06        32.25        36.72        28.70        19.56 
TCGA-13-0802 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0888 
        8.19        35.28        13.61        68.91        91.40        70.39 
TCGA-13-0890 TCGA-13-0899 TCGA-13-0901 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       67.99        56.15        19.36        34.06        29.98        21.14 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1407 TCGA-13-1411 TCGA-13-1481 TCGA-13-1482 
        6.08        10.88         6.05         4.21        87.06        61.71 
TCGA-13-1483 TCGA-13-1487 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1499 
       29.39        22.39        38.17        49.22         4.24        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1509 TCGA-13-1510 TCGA-13-2059 
       13.97        32.84         4.21         4.14         2.56        12.23 
TCGA-13-2061 TCGA-13-2065 TCGA-20-0990 TCGA-20-0991 TCGA-20-1684 TCGA-20-1686 
       10.78         8.75        25.94        26.20        19.07         2.93 
TCGA-23-1021 TCGA-23-1024 TCGA-23-1114 TCGA-23-1116 TCGA-23-1120 TCGA-23-1123 
       47.54        15.39        68.68         4.57         4.27        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2643 TCGA-23-2645 TCGA-24-0975 
       58.13         0.53       115.89         4.70         4.50        21.80 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
        7.66        22.32        63.55         6.31         6.38         7.82 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 
        6.25         6.02         4.80        17.36        19.17        18.67 
TCGA-24-1436 TCGA-24-1464 TCGA-24-1467 TCGA-24-1470 TCGA-24-1544 TCGA-24-1546 
        8.55        12.46       105.99         3.42        26.96        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 TCGA-24-1558 TCGA-24-1604 
       16.21        56.58        41.06        41.39        19.53        88.34 
TCGA-24-1614 TCGA-24-1842 TCGA-24-1846 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 
       48.33         8.32         4.37        30.21        11.05        81.11 
TCGA-24-2024 TCGA-24-2030 TCGA-24-2035 TCGA-24-2254 TCGA-24-2261 TCGA-24-2267 
       58.16        53.95        28.18        57.07         0.79        47.54 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       70.45        44.58         0.82        36.23        16.64        33.11 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1322 
       26.93        31.99        34.98        65.00        33.96         2.99 
TCGA-25-1323 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 
       12.00        15.78         0.36         7.86         0.30        60.59 
TCGA-25-1635 TCGA-25-1871 TCGA-25-1878 TCGA-25-2393 TCGA-25-2396 TCGA-25-2399 
       51.22        24.99        85.05        38.04         3.02        19.99 
TCGA-25-2404 TCGA-25-2409 TCGA-29-1694 TCGA-29-1695 TCGA-29-1697 TCGA-29-1698 
       29.00        26.96        38.53         0.79        31.17        68.28 
TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1710 TCGA-29-1761 TCGA-29-1762 
       16.90        59.67        18.25        29.23        17.00        85.68 
TCGA-29-1768 TCGA-29-1770 TCGA-29-1775 TCGA-29-1783 TCGA-29-1784 TCGA-29-2428 
       31.23        24.36        12.36         7.20         5.36        45.11 
TCGA-29-2429 TCGA-29-2434 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1862 
        4.87        11.47         2.47        15.68         0.26         6.08 
TCGA-30-1866 TCGA-30-1887 TCGA-31-1950 TCGA-31-1955 TCGA-36-1571 TCGA-36-1575 
       36.62        24.26        18.77        42.51        22.85         8.55 
TCGA-36-1577 TCGA-36-1580 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2542 
       25.74        24.23        29.79        25.91        25.08        21.60 
TCGA-36-2547 TCGA-36-2552 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       20.52        11.47         9.07         9.44         7.56         7.46 
TCGA-57-1583 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
       11.38         1.74        28.96        25.05        25.02       180.16 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
       22.32       116.12         9.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1737 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1904 
       31.76        44.84         2.43        33.67         1.41         9.07 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1919 TCGA-61-2000 TCGA-61-2008 TCGA-61-2018 
       56.58        67.73        38.17        14.50        30.61        45.40 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 
       60.62        65.49        55.50         6.48        76.83        44.52 
TCGA-61-2113 TCGA-61-2613 
       22.22        31.07 

$`8P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 
       40.24         1.81        49.15         2.01        18.51        11.87 
TCGA-04-1347 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 
       63.06        63.98        65.46        49.28        44.32        33.67 
TCGA-04-1516 TCGA-04-1525 TCGA-04-1542 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 
       41.59        38.37        84.20        48.89        28.64        64.64 
TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0369 
       36.23        47.70        45.34        29.16         9.47        35.54 
TCGA-09-1659 TCGA-09-1662 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 
        9.96        89.33        41.59        57.57        61.87        30.48 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        5.85         3.02        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2053 TCGA-09-2055 TCGA-10-0926 TCGA-10-0933 
        4.50       112.37        39.75        26.93        25.91        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
        3.88        35.41        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0724 TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 
       44.55         2.73        31.07        15.19        55.17         2.47 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.38        11.54        31.04        21.40         8.42        38.93 
TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 
       30.35         8.71         7.79         8.12         8.28        43.82 
TCGA-13-0804 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0891 
       35.28       107.18        74.27        66.64        61.81        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       43.36        57.47        57.07        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0919 TCGA-13-0920 
       44.94        44.84        37.08        27.68        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 
        4.64         6.41         6.61         7.36         5.92         6.84 
TCGA-13-1410 TCGA-13-1412 TCGA-13-1477 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 
        4.70         5.33        54.61        98.04        20.68        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1497 TCGA-13-1498 TCGA-13-1504 
       82.88        52.44        73.55        54.31        37.61        16.57 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 
        4.41         4.77         3.88         3.09        14.24         8.58 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 
        6.28        23.05        72.20        27.48        25.38        16.67 
TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
        2.66        42.51        40.54        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 
        3.22        31.20        33.30        86.01       129.96         6.38 
TCGA-23-1122 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       39.09        24.95        87.48        91.66        77.00        49.84 
TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0979 TCGA-24-1103 
        2.76         7.63        19.63        11.64        41.56        54.08 
TCGA-24-1105 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 
       47.41         7.99         7.86         0.76         5.95         5.36 
TCGA-24-1430 TCGA-24-1435 TCGA-24-1463 TCGA-24-1466 TCGA-24-1469 TCGA-24-1471 
       28.34        43.53        72.92        45.14         9.11         1.18 
TCGA-24-1474 TCGA-24-1545 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       22.19        57.37        51.91        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       39.88        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       17.23        90.15        38.24         3.48         3.72         3.81 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
       11.28         5.75         5.49         9.80        22.65        16.41 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
        4.87       151.99        44.84        34.82       109.68        14.43 
TCGA-24-2033 TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 TCGA-24-2262 TCGA-24-2271 
       18.48        64.01        44.48        36.16         0.36        31.63 
TCGA-24-2289 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1315 TCGA-25-1316 
       67.36        55.86        53.26         1.02        51.06        37.02 
TCGA-25-1317 TCGA-25-1320 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1628 
        1.02        36.95         2.96        18.58        18.02        20.58 
TCGA-25-1632 TCGA-25-1634 TCGA-25-1870 TCGA-25-1877 TCGA-25-2042 TCGA-25-2391 
       56.94        35.54        14.93        18.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2397 TCGA-25-2398 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 
        1.02        12.00        45.01        42.02         2.96        30.97 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1696 TCGA-29-1699 
       78.87        44.71        47.18       101.75        33.70         0.53 
TCGA-29-1702 TCGA-29-1707 TCGA-29-1711 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       18.64        41.95        34.62        66.77        62.93        39.09 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.98        22.52        17.29        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2431 
        8.35        34.62        86.17        65.00        62.47        42.25 
TCGA-29-2432 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1859 
       11.84         9.76        38.07        51.91        36.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 
       44.91        34.78         1.18        57.57        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1956 TCGA-31-1959 
       45.57        30.18        22.45         6.71        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 
       28.73        29.06        21.53        22.55        30.05        27.85 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2540 TCGA-36-2543 
       24.69        35.05        33.01        29.49        23.80         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 
       20.98        18.31        14.17         6.05        16.14        14.30 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1586 TCGA-59-2349 TCGA-59-2354 
        7.63        24.03        21.14        22.32        80.12        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1734 TCGA-61-1736 TCGA-61-1738 TCGA-61-1743 TCGA-61-1899 
       31.40        28.47        48.79        35.80        43.69         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        5.79        11.41        13.02        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 
       42.48        48.92        43.43        15.75         1.97         5.52 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
       17.98         3.98        39.85        30.64         1.18        45.96 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2109 TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2614 
       20.68       125.72        51.91        15.88         6.35         8.58 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.26              0.36 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           180.16            151.99 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           25.925            29.770 
[1] "0.3 - 180.2 (25.9)" "0.4 - 152.0 (29.8)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D55V2, continuous
D55V3, multiclass
                    clus
vv                   8P LOSS MUTATED 8P LOSS WILD-TYPE
  OMENTUM                          2                 0
  OVARY                          224               326
  PERITONEUM (OVARY)               0                 2
D55V4, continuous
D55V5, multiclass
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  I                 4                12
  II               12                14
  III             177               248
  IV               30                52
D55V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      1  225
  8P LOSS WILD-TYPE    2  326
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                1                 2
  YES             225               326
D55V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED    185   41
  8P LOSS WILD-TYPE  265   63
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO              185               265
  YES              41                63

Clustering(56) Variable = 8q loss mutation analysis
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED    30  30
  8Q LOSS WILD-TYPE 233 255
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               60               488 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               30               255 
$`8Q LOSS MUTATED`
TCGA-04-1346 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-09-0366 TCGA-09-1668 
       65.49        82.36        56.55        19.99        57.73        55.36 
TCGA-09-2051 TCGA-09-2054 TCGA-13-0730 TCGA-13-0757 TCGA-13-0762 TCGA-13-0885 
       63.09        20.91        17.79        11.18        32.25        91.40 
TCGA-13-0901 TCGA-13-0913 TCGA-13-1407 TCGA-13-1483 TCGA-13-1510 TCGA-13-2061 
       19.36        29.98         6.05        29.39         2.56        10.78 
TCGA-13-2065 TCGA-20-1684 TCGA-23-1021 TCGA-23-1032 TCGA-23-1809 TCGA-24-0980 
        8.75        19.07        47.54         2.24         0.53         7.66 
TCGA-24-0982 TCGA-24-1413 TCGA-24-1427 TCGA-24-1431 TCGA-24-1544 TCGA-24-1548 
       22.32         6.31         4.80        19.17        26.96        16.21 
TCGA-24-1842 TCGA-24-1928 TCGA-24-2030 TCGA-24-2254 TCGA-24-2261 TCGA-24-2267 
        8.32        11.05        53.95        57.07         0.79        47.54 
TCGA-24-2280 TCGA-25-1318 TCGA-25-1319 TCGA-25-1630 TCGA-25-1634 TCGA-25-1635 
       70.45        34.98        65.00         7.86        35.54        51.22 
TCGA-25-1871 TCGA-25-2393 TCGA-29-1770 TCGA-29-1775 TCGA-36-1571 TCGA-36-1575 
       24.99        38.04        24.36        12.36        22.85         8.55 
TCGA-36-2537 TCGA-36-2547 TCGA-42-2587 TCGA-42-2589 TCGA-57-1994 TCGA-61-1727 
       25.91        20.52         9.07         7.56        25.02        18.54 
TCGA-61-1733 TCGA-61-1904 TCGA-61-2097 TCGA-61-2101 TCGA-61-2102 TCGA-61-2110 
       31.76         9.07        60.62        55.50         6.48        44.52 

$`8Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       18.51        11.87        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 
       71.47        41.59        38.37       119.08        29.06        84.20 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       55.40        48.89        27.88        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 
       31.86        47.70        45.34        29.16         9.47        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       35.54         9.96        38.43        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       57.57        61.87        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
      112.37        71.11        39.75        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       15.19        55.17         2.47        11.38        11.54        34.06 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       30.35        19.56         8.71         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
      107.18        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 
       69.01        43.36        57.47        56.15        57.07        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       34.06        21.14        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 
        6.08        10.88         6.61         7.36         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        4.70         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 
        4.77         4.14         3.88         3.09        14.24        12.23 
TCGA-13-2060 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.58         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 
       27.48        25.38        16.67         2.93         2.66        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       29.10        18.87        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
        6.38        39.09        33.47        58.13        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       54.08        63.55        47.41         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       17.36        28.34        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       22.19        57.37        64.27        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 
       90.15        88.34        48.33        38.24         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.81         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       22.65        30.21        16.41        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 
       44.84        58.16        34.82       109.68        14.43        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 TCGA-24-2262 TCGA-24-2271 
       28.18        64.01        44.48        36.16         0.36        31.63 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       37.02         1.02        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 
        0.30        56.94        60.59        14.93        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       13.02        49.05         1.02         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       22.52        17.29        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       45.11         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       38.07        51.91        36.26         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 
       28.73        29.06        21.53        22.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       29.79        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       18.31        14.17         6.05        16.14        11.47        14.30 
TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        9.44         7.46         7.63        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-59-2348 TCGA-59-2349 
        1.74        22.32        28.96        25.05       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 
       44.78        11.11         8.05        20.94        31.40        27.88 
TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
        4.34        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       13.02        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2104 
       51.72        71.74        61.64        58.39        65.49        76.83 
TCGA-61-2109 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       20.68       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.53              0.26 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            91.40            180.16 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           22.585            28.980 
[1] "0.5 - 91.4 (22.6)"  "0.3 - 180.2 (29.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D56V2, continuous
D56V3, multiclass
                    clus
vv                   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           60               490
  PERITONEUM (OVARY)               0                 2
D56V4, continuous
D56V5, multiclass
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  I                 1                15
  II                3                23
  III              53               372
  IV                2                80
D56V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      0   60
  8Q LOSS WILD-TYPE    3  491
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                0                 3
  YES              60               491
D56V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED     50   10
  8Q LOSS WILD-TYPE  400   94
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO               50               400
  YES              10                94

Clustering(57) Variable = 9p loss mutation analysis
D57V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED    90 114
  9P LOSS WILD-TYPE 173 171
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              204               344 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              114               171 
$`9P LOSS MUTATED`
TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
       49.15         2.01        46.62        11.87        65.49        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 
       21.57        63.98        65.46        49.28        32.52        44.32 
TCGA-04-1364 TCGA-04-1371 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 TCGA-04-1542 
       33.67        82.36        19.99        38.37        29.06        84.20 
TCGA-04-1638 TCGA-04-1646 TCGA-04-1652 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 
       55.40        27.88        31.86        29.16         9.47        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1665 TCGA-09-1670 
       35.54         9.96        38.43        89.33        41.59        17.98 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2049 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
       97.55         6.12       112.37        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0927 TCGA-10-0931 TCGA-10-0938 TCGA-13-0717 TCGA-13-0762 
       12.46        81.47        32.28        19.86        24.59        32.25 
TCGA-13-0795 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0886 TCGA-13-0888 
       19.56        35.28        35.28        68.91        74.27        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0904 TCGA-13-0908 TCGA-13-0921 TCGA-13-0924 
       61.81        67.99        48.33        44.84         4.64         6.08 
TCGA-13-1403 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
       10.88         5.92         6.84         4.70         4.21         5.33 
TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 
       29.39        20.68        22.39        82.88        52.44        38.17 
TCGA-13-1495 TCGA-13-1509 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
       49.22         4.14        14.24         8.58        10.78         8.75 
TCGA-20-1684 TCGA-20-1685 TCGA-23-1022 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 
       19.07        16.67        42.51        31.73        49.41        29.10 
TCGA-23-1031 TCGA-23-1114 TCGA-23-1119 TCGA-23-2081 TCGA-23-2643 TCGA-23-2645 
       18.87        68.68       129.96        77.00         4.70         4.50 
TCGA-24-0982 TCGA-24-1105 TCGA-24-1422 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 
       22.32        47.41         0.76         5.36         4.80        28.34 
TCGA-24-1431 TCGA-24-1463 TCGA-24-1464 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 
       19.17        72.92        12.46        57.37        64.27        56.58 
TCGA-24-1550 TCGA-24-1560 TCGA-24-1603 TCGA-24-1604 TCGA-24-1843 TCGA-24-1930 
       41.06        44.09        90.15        88.34         3.48        81.11 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 
       44.84        58.16        14.43        53.95        28.18        64.01 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2295 TCGA-25-1312 TCGA-25-1314 TCGA-25-1316 
       36.16         0.79        33.11         1.02        31.99        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1321 TCGA-25-1323 TCGA-25-1625 TCGA-25-1627 
        1.02        34.98        33.96        12.00        18.02         0.36 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-2392 TCGA-25-2393 
       60.59        35.54        14.93        24.99         1.02        38.04 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       19.99        42.02         2.96       101.75        38.53         0.79 
TCGA-29-1699 TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1766 
        0.53        18.64        18.25        41.95        29.23        39.09 
TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1783 TCGA-29-2425 TCGA-29-2434 
       24.36        17.29        12.36         7.20        65.00        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 
        9.76        38.07        51.91        36.26        15.68         0.26 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1891 TCGA-31-1953 TCGA-31-1955 
       34.78        36.62        57.57        30.05         6.71        42.51 
TCGA-31-1959 TCGA-36-1569 TCGA-36-1571 TCGA-36-1576 TCGA-36-1580 TCGA-36-2529 
        2.17        29.06        22.85        30.05        24.23        35.05 
TCGA-36-2537 TCGA-36-2540 TCGA-36-2544 TCGA-36-2548 TCGA-36-2552 TCGA-42-2589 
       25.91        23.80        20.98        14.17        11.47         7.56 
TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 TCGA-57-1992 TCGA-57-1994 
        7.46        24.03        11.38         1.74        28.96        25.02 
TCGA-59-2351 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1730 TCGA-61-1733 
      116.12         2.14         5.39        44.78         4.34        31.76 
TCGA-61-1736 TCGA-61-1900 TCGA-61-1910 TCGA-61-1914 TCGA-61-1915 TCGA-61-1919 
       48.79         5.79        37.02        56.58        67.73        38.17 
TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        1.97        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       30.64         1.18        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2113 TCGA-61-2610 
       55.50         6.48        76.83        20.68        22.22        51.91 

$`9P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1342 TCGA-04-1348 TCGA-04-1365 
       40.24        41.00         1.81        18.51        48.76        76.54 
TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1530 TCGA-04-1644 TCGA-04-1648 
       71.47        56.55        41.59       119.08        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 TCGA-09-1664 
       64.64        36.23        47.70        45.34        57.73        74.89 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1672 TCGA-09-1673 
       57.57        61.87        55.36        30.48         5.85         3.02 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 
        8.55         6.15        35.15         4.50        71.11        63.09 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 
       54.31        25.91        18.48        33.24        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 
       35.41        35.80        15.12         6.21        44.55        39.58 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
        2.73        12.39        31.07        15.19        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 
        2.47        11.18        11.38        11.54        34.06        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0887 TCGA-13-0891 TCGA-13-0893 
       13.61       107.18        91.40        66.64        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 
       57.47        56.15        57.07        19.36        47.38        47.84 
TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.94        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
       14.89        13.81         6.41         6.61         7.36         6.05 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 TCGA-13-1488 TCGA-13-1492 
       54.61        87.06        61.71        98.04        70.82        73.55 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
        4.24        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1510 TCGA-13-1511 
       16.57         4.21         4.41         4.77         2.56         3.88 
TCGA-13-1512 TCGA-13-2059 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
        3.09        12.23         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       72.20        27.48        25.38         2.93         2.66        47.54 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1029 TCGA-23-1032 TCGA-23-1109 
       40.54        15.39        26.83         8.81         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
        4.27         6.38        39.09        33.47        58.13         0.53 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2084 TCGA-23-2641 
       24.95       115.89        87.48        91.66        49.84         2.76 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       54.08        63.55         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1428 TCGA-24-1434 
        7.86         6.25         6.02         5.95        17.36        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       43.53         8.55        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1548 TCGA-24-1551 TCGA-24-1552 
        1.18        22.19        26.96        16.21        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1562 
       58.09        88.50        70.62        39.88        19.53        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1614 TCGA-24-1616 
       47.70        25.87        10.26        17.23        48.33        38.24 
TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        8.32         3.72         3.81         4.37        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 
        5.49         9.80        22.65        30.21        16.41        11.05 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 TCGA-24-2027 TCGA-24-2033 TCGA-24-2038 
        4.87       151.99        34.82       109.68        18.48        44.48 
TCGA-24-2254 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       57.07         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 
        0.82        67.36        36.23        16.64        55.86        53.26 
TCGA-25-1313 TCGA-25-1315 TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1329 
       26.93        51.06        65.00        36.95         2.99         2.96 
TCGA-25-1623 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       18.58        15.78        20.58         7.86         0.30        56.94 
TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2396 
       51.22        18.05        85.05        13.02        49.05         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       12.00        45.01        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 
       44.71        47.18        33.70        31.17        68.28        16.90 
TCGA-29-1703 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       59.67        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       31.23        22.98        22.52        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 
        8.35         5.36        34.62        86.17        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-30-1855 TCGA-30-1859 TCGA-30-1860 
        4.87        42.25        11.84         2.47        48.07        44.91 
TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        6.08         1.18        24.26        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1956 TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 
       18.77        22.45        44.09        28.73        21.53        22.55 
TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 
        8.55        25.74        27.85        24.69        33.01        29.49 
TCGA-36-2534 TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-36-2547 
       29.79        25.08        21.60         2.24        18.31        20.52 
TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2591 
        6.05        16.14        14.30         9.07         9.44         7.63 
TCGA-57-1584 TCGA-57-1586 TCGA-57-1993 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       21.14        22.32        25.05       180.16        80.12        22.32 
TCGA-59-2352 TCGA-59-2354 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        9.40        34.39        11.11         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       18.54        27.88        28.47        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 
       33.67        43.69         1.41         8.42        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1911 TCGA-61-1913 TCGA-61-1917 
        9.07        34.13        31.30        42.48        48.92        43.43 
TCGA-61-1918 TCGA-61-1998 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       15.75         5.52        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2110 TCGA-61-2111 TCGA-61-2611 TCGA-61-2612 
       51.72        71.74        44.52       125.72        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.26              0.30 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           129.96            180.16 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            29.31             26.88 
[1] "0.3 - 130.0 (29.3)" "0.3 - 180.2 (26.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D57V2, continuous
D57V3, multiclass
                    clus
vv                   9P LOSS MUTATED 9P LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          206               344
  PERITONEUM (OVARY)               2                 0
D57V4, continuous
D57V5, multiclass
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  I                 6                10
  II               13                13
  III             159               266
  IV               27                55
D57V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      2  206
  9P LOSS WILD-TYPE    1  345
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO                2                 1
  YES             206               345
D57V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED    162   46
  9P LOSS WILD-TYPE  288   58
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO              162               288
  YES              46                58

Clustering(58) Variable = 9q loss mutation analysis
D58V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED   105 127
  9Q LOSS WILD-TYPE 158 158
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              232               316 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              127               158 
$`9Q LOSS MUTATED`
TCGA-04-1332 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
       41.00        49.15        46.62        11.87        65.49        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       21.57        63.98        49.28        32.52        44.32        33.67 
TCGA-04-1371 TCGA-04-1517 TCGA-04-1525 TCGA-04-1542 TCGA-04-1638 TCGA-04-1646 
       82.36        19.99        38.37        84.20        55.40        27.88 
TCGA-04-1649 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 
       64.64        45.34        29.16         9.47        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 
        9.96        38.43        61.87        30.48        17.98         8.55 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2049 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
       97.55         6.12       112.37        39.75        20.91        26.93 
TCGA-10-0927 TCGA-10-0936 TCGA-10-0938 TCGA-13-0717 TCGA-13-0751 TCGA-13-0757 
       81.47        35.80        19.86        24.59        55.17        11.18 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0793 TCGA-13-0795 TCGA-13-0803 TCGA-13-0804 
       32.25        31.04        28.70        19.56        43.82        35.28 
TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0888 
       35.28        68.91       107.18        91.40        74.27        70.39 
TCGA-13-0889 TCGA-13-0899 TCGA-13-0904 TCGA-13-0908 TCGA-13-0913 TCGA-13-0921 
       61.81        56.15        48.33        44.84        29.98         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
        6.41         6.08        10.88         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 
        4.70         4.21        29.39        22.39        82.88        52.44 
TCGA-13-1495 TCGA-13-1500 TCGA-13-1507 TCGA-13-1509 TCGA-13-2060 TCGA-13-2061 
       49.22        13.97         4.77         4.14         8.58        10.78 
TCGA-13-2065 TCGA-20-0990 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-23-1021 
        8.75        25.94        27.48        19.07        16.67        47.54 
TCGA-23-1022 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 TCGA-23-1111 TCGA-23-1114 
       42.51        49.41        29.10        18.87         3.22        68.68 
TCGA-23-1119 TCGA-23-1123 TCGA-23-2072 TCGA-23-2077 TCGA-23-2643 TCGA-24-0968 
      129.96        33.47        24.95       115.89         4.70        19.63 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1105 TCGA-24-1413 TCGA-24-1417 
       21.80        41.56        22.32        47.41         6.31         7.82 
TCGA-24-1422 TCGA-24-1424 TCGA-24-1426 TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 
        0.76         6.02         5.36        28.34        19.17         8.55 
TCGA-24-1464 TCGA-24-1469 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1549 
       12.46         9.11         1.18        26.96        57.37        56.58 
TCGA-24-1550 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1603 TCGA-24-1604 
       41.06        19.53        44.09        45.50        90.15        88.34 
TCGA-24-1616 TCGA-24-1843 TCGA-24-1845 TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 
       38.24         3.48         3.81        30.21        81.11         4.87 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 
       44.84        58.16        34.82        14.43        18.48        28.18 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2267 TCGA-24-2288 TCGA-24-2295 TCGA-25-1312 
       36.16         0.79        47.54         0.82        33.11         1.02 
TCGA-25-1314 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1321 TCGA-25-1323 
       31.99        37.02         1.02        34.98        33.96        12.00 
TCGA-25-1627 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 
        0.36         0.30        60.59        35.54        14.93        24.99 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-29-1693 
        1.02        38.04        45.01        19.99        42.02       101.75 
TCGA-29-1695 TCGA-29-1699 TCGA-29-1702 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 
        0.79         0.53        18.64        29.23        17.00        66.77 
TCGA-29-1766 TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1783 
       39.09        24.36        17.29        12.36        12.30         7.20 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1861 
       11.47        38.07        36.26        15.68         0.26        34.78 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-31-1944 TCGA-31-1950 TCGA-31-1953 
       36.62         1.18        57.57        45.57        18.77         6.71 
TCGA-31-1955 TCGA-36-1569 TCGA-36-1571 TCGA-36-1576 TCGA-36-1580 TCGA-36-2529 
       42.51        29.06        22.85        30.05        24.23        35.05 
TCGA-36-2537 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2552 
       25.91         2.24        20.98        18.31        14.17        11.47 
TCGA-42-2589 TCGA-42-2590 TCGA-57-1582 TCGA-57-1585 TCGA-57-1992 TCGA-59-2351 
        7.56         7.46        24.03         1.74        28.96       116.12 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 
        2.14         5.39        44.78         4.34        31.76        48.79 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1899 TCGA-61-1904 TCGA-61-1906 TCGA-61-1914 
       33.67        43.69         8.42         9.07        34.13        56.58 
TCGA-61-1915 TCGA-61-1919 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       67.73        38.17         1.97        14.50        17.98         3.98 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2094 TCGA-61-2096 TCGA-61-2097 
       39.85        30.64         1.18        71.74        58.39        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 
       65.49        55.50         6.48        76.83        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        31.07         8.58 

$`9Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1337 TCGA-04-1342 TCGA-04-1348 TCGA-04-1351 
       40.24         1.81         2.01        18.51        48.76        65.46 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1530 TCGA-04-1536 
       76.54        71.47        56.55        41.59       119.08        29.06 
TCGA-04-1644 TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0366 
       48.89        28.64        36.23        31.86        47.70        57.73 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1668 TCGA-09-1672 
       89.33        74.89        41.59        57.57        55.36         5.85 
TCGA-09-1673 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 
        3.02         6.15        35.15         4.50        71.11        63.09 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       12.46        54.31        25.91        18.48        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-13-0714 TCGA-13-0720 
       11.70         3.88        35.41        15.12         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0766 TCGA-13-0768 
        2.47        11.38        11.54        34.06        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       38.93        36.72        30.35         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0807 TCGA-13-0887 TCGA-13-0890 TCGA-13-0891 
        8.28         8.19        13.61        66.64        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 
       43.36        57.47        57.07        19.36        47.38        47.84 
TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 
       44.94        37.08        27.68        34.06        21.14        14.89 
TCGA-13-0920 TCGA-13-1404 TCGA-13-1405 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
       13.81         6.61         7.36         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1492 TCGA-13-1494 
       61.71        98.04        20.68        70.82        73.55        38.17 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 
        4.24        54.31        37.61        38.37        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.21         4.41         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 
       12.23         6.28        23.05        26.20        72.20        25.38 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
        2.93         2.66        40.54        15.39        26.83        31.73 
TCGA-23-1029 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1116 
        8.81         2.24        51.35        54.51        31.20         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 
       33.30        86.01         4.27         6.38        39.09        58.13 
TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
        0.53        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0970 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 
        4.50         7.63        11.64         7.66        54.08        63.55 
TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 TCGA-24-1423 TCGA-24-1425 TCGA-24-1427 
        6.38         7.99         7.86         6.25         5.95         4.80 
TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1466 TCGA-24-1467 
       17.36        18.67        43.53        72.92        45.14       105.99 
TCGA-24-1470 TCGA-24-1474 TCGA-24-1546 TCGA-24-1548 TCGA-24-1551 TCGA-24-1552 
        3.42        22.19        64.27        16.21        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1563 TCGA-24-1564 
       58.09        88.50        70.62        39.88        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1614 TCGA-24-1842 TCGA-24-1844 TCGA-24-1846 
       10.26        17.23        48.33         8.32         3.72         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
       11.28         5.75         5.49         9.80        22.65        16.41 
TCGA-24-1928 TCGA-24-2020 TCGA-24-2027 TCGA-24-2030 TCGA-24-2036 TCGA-24-2038 
       11.05       151.99       109.68        53.95        64.01        44.48 
TCGA-24-2254 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 
       57.07         0.36        31.63        70.45        44.58        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1315 
       36.23        16.64        55.86        53.26        26.93        51.06 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       65.00        36.95         2.99         2.96        18.58        18.02 
TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1632 TCGA-25-1635 TCGA-25-1877 
       15.78        20.58         7.86        56.94        51.22        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2396 TCGA-25-2397 TCGA-25-2401 
       85.05        13.02        49.05         3.02        12.00         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 TCGA-29-1703 
       38.53        33.70        31.17        68.28        16.90        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1768 
       18.25        41.95        34.62        85.68        62.93        31.23 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1776 TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 
       22.98        22.52        11.84        14.93         8.35         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1859 
       42.25        11.84         9.76        51.91         2.47        48.07 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 
       44.91         6.08        24.26        30.05        48.79        30.18 
TCGA-31-1951 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 
       22.45        44.09         2.17        28.73        21.53        22.55 
TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 
        8.55        25.74        27.85        24.69        33.01        29.49 
TCGA-36-2534 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2547 TCGA-36-2549 
       29.79        25.08        23.80        21.60        20.52         6.05 
TCGA-36-2551 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2591 TCGA-57-1583 
       16.14        14.30         9.07         9.44         7.63        11.38 
TCGA-57-1584 TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       21.14        22.32        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
       22.32         9.40        34.39        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 TCGA-61-1737 TCGA-61-1738 
       31.40        18.54        27.88        28.47        44.84        35.80 
TCGA-61-1740 TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1907 
        2.43         1.41         5.79        11.41        13.02        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1917 TCGA-61-1918 TCGA-61-1998 
       37.02        42.48        48.92        43.43        15.75         5.52 
TCGA-61-2008 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
       30.61        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2095 TCGA-61-2109 TCGA-61-2611 TCGA-61-2612 
       61.64        20.68        15.88         6.35 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.26              0.36 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           129.96            180.16 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           29.080            26.945 
[1] "0.3 - 130.0 (29.1)" "0.4 - 180.2 (26.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
[1] "hr=" "1.1"
D58V2, continuous
D58V3, multiclass
                    clus
vv                   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          234               316
  PERITONEUM (OVARY)               2                 0
D58V4, continuous
D58V5, multiclass
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  I                 6                10
  II               14                12
  III             186               239
  IV               28                54
D58V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      2  234
  9Q LOSS WILD-TYPE    1  317
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                2                 1
  YES             234               317
D58V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED    190   46
  9Q LOSS WILD-TYPE  260   58
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO              190               260
  YES              46                58

Clustering(59) Variable = 10p loss mutation analysis
D59V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    28  32
  10P LOSS WILD-TYPE 235 253
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                60                488 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                32                253 
$`10P LOSS MUTATED`
TCGA-04-1371 TCGA-04-1648 TCGA-09-0364 TCGA-09-0366 TCGA-09-2043 TCGA-09-2053 
       82.36        28.64        29.16        57.73         6.15        39.75 
TCGA-10-0938 TCGA-13-0724 TCGA-13-0803 TCGA-13-0889 TCGA-13-0893 TCGA-13-0904 
       19.86         2.73        43.82        61.81        43.36        48.33 
TCGA-13-0921 TCGA-13-1408 TCGA-13-1489 TCGA-13-1500 TCGA-13-1507 TCGA-20-1684 
        4.64         5.92        82.88        13.97         4.77        19.07 
TCGA-23-1114 TCGA-23-2072 TCGA-23-2078 TCGA-24-0979 TCGA-24-1104 TCGA-24-1416 
       68.68        24.95        87.48        41.56        63.55         6.38 
TCGA-24-1425 TCGA-24-1435 TCGA-24-1466 TCGA-24-1467 TCGA-24-1471 TCGA-24-1614 
        5.95        43.53        45.14       105.99         1.18        48.33 
TCGA-24-2026 TCGA-24-2030 TCGA-24-2254 TCGA-24-2280 TCGA-24-2297 TCGA-24-2298 
       34.82        53.95        57.07        70.45        55.86        53.26 
TCGA-25-1313 TCGA-25-1625 TCGA-25-1632 TCGA-25-2393 TCGA-29-1697 TCGA-29-1699 
       26.93        18.02        56.94        38.04        31.17         0.53 
TCGA-29-1761 TCGA-29-1769 TCGA-30-1714 TCGA-30-1855 TCGA-31-1951 TCGA-31-1959 
       17.00        22.98        38.07         2.47        22.45         2.17 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 TCGA-36-2542 TCGA-36-2544 TCGA-36-2547 
       29.49        29.79        25.08        21.60        20.98        20.52 
TCGA-42-2589 TCGA-61-1724 TCGA-61-1734 TCGA-61-1743 TCGA-61-1913 TCGA-61-2094 
        7.56        20.94        28.47        43.69        48.92        71.74 

$`10P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 
       64.64        36.23        31.86        47.70        45.34         9.47 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 
        5.85         3.02         8.55        97.55         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 
        4.50       112.37        71.11        63.09        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 
        6.21        24.59        44.55        39.58        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 
        7.79         8.12         8.28         8.19        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       70.39        67.99        69.01        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       19.36        47.38        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       52.44        73.55        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       37.61        38.37        32.84        16.57         4.21         4.41 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 
        4.14         2.56         3.88         3.09        14.24        12.23 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
        8.58        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 
       26.20        72.20        27.48        25.38        16.67         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
        2.66        47.54        42.51        40.54        15.39        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 
       51.35        54.51         3.22        31.20         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       58.13         0.53       115.89        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 
       21.80         7.66        22.32        54.08        47.41         6.31 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 
        8.55        72.92        12.46         9.11         3.42        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       17.23        90.15        88.34        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
        4.87       151.99        44.84        58.16       109.68        14.43 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 
       18.48        28.18        64.01        44.48        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
        0.36        47.54        31.63        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 
       36.23        16.64        33.11         1.02        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 
        2.99        12.00         2.96        18.58        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
       20.58         7.86         0.30        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       14.93        24.99        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
        1.02         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1698 
       47.18       101.75        38.53         0.79        33.70        68.28 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       34.62        85.68        66.77        62.93        39.09        31.23 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       65.00        62.47        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 
       11.47         9.76        51.91        36.26        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 
       18.77         6.71        42.51        44.09        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2537 
       27.85        24.23        24.69        35.05        33.01        25.91 
TCGA-36-2540 TCGA-36-2543 TCGA-36-2545 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       23.80         2.24        18.31        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 
       11.47        14.30         9.07         9.44         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
        8.05        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 
       48.79        44.84        35.80         2.43        33.67         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       31.30        37.02        42.48        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
        3.98        30.61        39.85        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 
       45.40         4.80         4.77        51.72        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       44.52       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.53               0.26 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            105.99             180.16 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            29.640             27.765 
[1] "0.5 - 106.0 (29.6)" "0.3 - 180.2 (27.8)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D59V2, continuous
D59V3, multiclass
                    clus
vv                   10P LOSS MUTATED 10P LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            61                489
  PERITONEUM (OVARY)                0                  2
D59V4, continuous
D59V5, multiclass
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  I                  2                 14
  II                 2                 24
  III               46                379
  IV                10                 72
D59V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      1   60
  10P LOSS WILD-TYPE    2  491
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 1                  2
  YES               60                491
D59V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     51   10
  10P LOSS WILD-TYPE  399   94
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                51                399
  YES               10                 94

Clustering(60) Variable = 10q loss mutation analysis
D60V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    42  44
  10Q LOSS WILD-TYPE 221 241
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                86                462 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                44                241 
$`10Q LOSS MUTATED`
TCGA-04-1343 TCGA-04-1648 TCGA-04-1649 TCGA-09-0364 TCGA-09-0366 TCGA-09-0369 
       11.87        28.64        64.64        29.16        57.73        35.54 
TCGA-09-1673 TCGA-09-2043 TCGA-09-2053 TCGA-10-0935 TCGA-10-0938 TCGA-13-0724 
        3.02         6.15        39.75        35.41        19.86         2.73 
TCGA-13-0751 TCGA-13-0760 TCGA-13-0764 TCGA-13-0794 TCGA-13-0800 TCGA-13-0803 
       55.17        11.54        31.04        30.35         8.12        43.82 
TCGA-13-0807 TCGA-13-0889 TCGA-13-0891 TCGA-13-0893 TCGA-13-0904 TCGA-13-0911 
       13.61        61.81        69.01        43.36        48.33        27.68 
TCGA-13-0916 TCGA-13-0921 TCGA-13-1408 TCGA-13-1489 TCGA-13-1497 TCGA-13-1507 
       21.14         4.64         5.92        82.88        54.31         4.77 
TCGA-20-1684 TCGA-20-1686 TCGA-23-1114 TCGA-23-2072 TCGA-24-0979 TCGA-24-1104 
       19.07         2.93        68.68        24.95        41.56        63.55 
TCGA-24-1416 TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1466 TCGA-24-1467 
        6.38        28.34        18.67        43.53        45.14       105.99 
TCGA-24-1471 TCGA-24-1557 TCGA-24-1614 TCGA-24-2026 TCGA-24-2030 TCGA-24-2254 
        1.18        39.88        48.33        34.82        53.95        57.07 
TCGA-24-2280 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1632 TCGA-25-1635 
       70.45        55.86        53.26        26.93        56.94        51.22 
TCGA-29-1699 TCGA-29-1703 TCGA-29-1761 TCGA-29-1769 TCGA-29-1770 TCGA-29-1778 
        0.53        59.67        17.00        22.98        24.36        14.93 
TCGA-30-1714 TCGA-30-1855 TCGA-30-1856 TCGA-30-1859 TCGA-31-1944 TCGA-31-1951 
       38.07         2.47        15.68        48.07        45.57        22.45 
TCGA-31-1953 TCGA-31-1959 TCGA-36-1577 TCGA-36-1581 TCGA-36-2532 TCGA-36-2534 
        6.71         2.17        25.74        24.69        29.49        29.79 
TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2547 TCGA-42-2589 TCGA-61-1724 
       25.08        21.60         2.24        20.52         7.56        20.94 
TCGA-61-1734 TCGA-61-1743 TCGA-61-1913 TCGA-61-2012 TCGA-61-2088 TCGA-61-2094 
       28.47        43.69        48.92        30.64         4.77        71.74 
TCGA-61-2102 TCGA-61-2113 
        6.48        22.22 

$`10Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       18.51        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 TCGA-09-0367 
       36.23        31.86        47.70        45.34         9.47        17.95 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1674 
       61.87        55.36        30.48        17.98         5.85         8.55 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       97.55         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       63.09        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       35.80        15.12         6.21        24.59        44.55        39.58 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 
       12.39        31.07        15.19        17.79         2.47        11.18 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.38        34.06        32.25        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
       36.72        28.70        19.56         8.71         7.79         8.28 
TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
        8.19        35.28        35.28        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0890 TCGA-13-0897 TCGA-13-0899 
       74.27        66.64        70.39        67.99        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       57.07        19.36        47.38        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 
       37.08        34.06        29.98        14.89        13.81         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1409 
        6.08        10.88         6.61         7.36         6.05         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        4.70         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 
       29.39        98.04        20.68        22.39        70.82        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 
       73.55        38.17        49.22         4.24        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 
       13.97        32.84        16.57         4.21         4.41         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        2.56         3.88         3.09        14.24        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 
       72.20        27.48        25.38        16.67         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
        3.22        31.20         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
        4.27         6.38        39.09        33.47        58.13         0.53 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 TCGA-24-1417 
        7.66        22.32        54.08        47.41         6.31         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1436 TCGA-24-1463 
        5.36         4.80        17.36        19.17         8.55        72.92 
TCGA-24-1464 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
       12.46         9.11         3.42        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       58.09        88.50        70.62        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       38.24         8.32         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       16.41        11.05        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
       58.16       109.68        14.43        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.48        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
        1.02        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
        0.30        60.59        35.54        14.93        24.99        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       85.05        13.02        49.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 
       12.00        45.01        19.99        42.02         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       30.97        26.96        78.87        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 
       38.53         0.79        33.70        31.17        68.28        16.90 
TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1762 
       18.64        18.25        41.95        29.23        34.62        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1771 TCGA-29-1774 
       66.77        62.93        39.09        31.23        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       12.36        11.84        12.30         8.35         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1853 
       42.25        11.84        11.47         9.76        51.91        36.26 
TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
        0.26        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 TCGA-31-1950 
       57.57        24.26        30.05        48.79        30.18        18.77 
TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       42.51        44.09        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 TCGA-36-2529 
       22.55         8.55        30.05        27.85        24.23        35.05 
TCGA-36-2530 TCGA-36-2537 TCGA-36-2540 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 
       33.01        25.91        23.80        20.98        18.31        14.17 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
        6.05        16.14        11.47        14.30         9.07         9.44 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.46         7.63        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       44.78        11.11         8.05        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
        4.34        31.76        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       33.67         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1914 
        9.07        34.13        31.30        37.02        42.48        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 
       14.50        17.98         3.98        30.61        39.85         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 
       45.96        45.40         4.80        51.72        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       60.62        65.49        55.50        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72        51.91        15.88         6.35        31.07         8.58 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.53               0.26 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            105.99             180.16 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            28.555             27.880 
[1] "0.5 - 106.0 (28.6)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D60V2, continuous
D60V3, multiclass
                    clus
vv                   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            86                464
  PERITONEUM (OVARY)                0                  2
D60V4, continuous
D60V5, multiclass
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  I                  2                 14
  II                 6                 20
  III               61                364
  IV                16                 66
D60V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      3   83
  10Q LOSS WILD-TYPE    0  468
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 3                  0
  YES               83                468
D60V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     74   12
  10Q LOSS WILD-TYPE  376   92
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                74                376
  YES               12                 92

Clustering(61) Variable = 11p loss mutation analysis
D61V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    58  80
  11P LOSS WILD-TYPE 205 205
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               138                410 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                80                205 
$`11P LOSS MUTATED`
TCGA-04-1331 TCGA-04-1338 TCGA-04-1347 TCGA-04-1351 TCGA-04-1356 TCGA-04-1367 
       40.24        46.62        63.06        65.46        49.28        71.47 
TCGA-04-1517 TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 
       19.99        29.06        84.20        48.89        28.64        64.64 
TCGA-09-0366 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1666 TCGA-09-1667 
       57.73        35.54         9.96        38.43        57.57        61.87 
TCGA-09-1674 TCGA-09-2053 TCGA-10-0926 TCGA-10-0928 TCGA-10-0930 TCGA-10-0937 
        8.55        39.75        25.91        18.48        33.24        15.12 
TCGA-10-0938 TCGA-13-0723 TCGA-13-0751 TCGA-13-0758 TCGA-13-0802 TCGA-13-0804 
       19.86        39.58        55.17        11.38         8.19        35.28 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0904 TCGA-13-0908 TCGA-13-0913 
       56.15        57.07        19.36        48.33        44.84        29.98 
TCGA-13-0920 TCGA-13-0921 TCGA-13-1404 TCGA-13-1409 TCGA-13-1477 TCGA-13-1482 
       13.81         4.64         6.61         6.84        54.61        61.71 
TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 TCGA-13-1494 TCGA-13-1495 TCGA-13-1500 
       29.39        22.39        82.88        38.17        49.22        13.97 
TCGA-13-1505 TCGA-13-1507 TCGA-13-1512 TCGA-13-2060 TCGA-13-2065 TCGA-20-0990 
        4.21         4.77         3.09         8.58         8.75        25.94 
TCGA-20-1683 TCGA-20-1686 TCGA-23-1022 TCGA-23-1027 TCGA-23-1113 TCGA-23-1114 
       25.38         2.93        42.51        31.73        31.20        68.68 
TCGA-23-1122 TCGA-23-2077 TCGA-23-2643 TCGA-24-0968 TCGA-24-0970 TCGA-24-1105 
       39.09       115.89         4.70        19.63        11.64        47.41 
TCGA-24-1418 TCGA-24-1427 TCGA-24-1463 TCGA-24-1466 TCGA-24-1474 TCGA-24-1544 
        7.99         4.80        72.92        45.14        22.19        26.96 
TCGA-24-1549 TCGA-24-1562 TCGA-24-1567 TCGA-24-1846 TCGA-24-1920 TCGA-24-1930 
       56.58        45.50        17.23         4.37         9.80        81.11 
TCGA-24-2019 TCGA-24-2026 TCGA-24-2027 TCGA-24-2254 TCGA-24-2260 TCGA-24-2267 
        4.87        34.82       109.68        57.07        36.16        47.54 
TCGA-24-2280 TCGA-24-2295 TCGA-24-2298 TCGA-25-1313 TCGA-25-1318 TCGA-25-1319 
       70.45        33.11        53.26        26.93        34.98        65.00 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1630 TCGA-25-1631 TCGA-25-1634 TCGA-25-1870 
       12.00         2.96         7.86         0.30        35.54        14.93 
TCGA-25-1871 TCGA-25-2392 TCGA-25-2393 TCGA-29-1688 TCGA-29-1695 TCGA-29-1696 
       24.99         1.02        38.04        78.87         0.79        33.70 
TCGA-29-1697 TCGA-29-1702 TCGA-29-1703 TCGA-29-1711 TCGA-29-1762 TCGA-29-1769 
       31.17        18.64        59.67        34.62        85.68        22.98 
TCGA-29-1777 TCGA-29-2414 TCGA-29-2428 TCGA-29-2434 TCGA-30-1853 TCGA-30-1861 
       12.30        86.17        45.11        11.47        36.26        34.78 
TCGA-30-1866 TCGA-30-1887 TCGA-31-1950 TCGA-31-1953 TCGA-36-1571 TCGA-36-1577 
       36.62        24.26        18.77         6.71        22.85        25.74 
TCGA-36-1581 TCGA-36-2538 TCGA-57-1582 TCGA-57-1993 TCGA-59-2372 TCGA-61-1724 
       24.69        25.08        24.03        25.05        44.78        20.94 
TCGA-61-1725 TCGA-61-1733 TCGA-61-1906 TCGA-61-1910 TCGA-61-1917 TCGA-61-1919 
       31.40        31.76        34.13        37.02        43.43        38.17 
TCGA-61-2002 TCGA-61-2018 TCGA-61-2088 TCGA-61-2094 TCGA-61-2102 TCGA-61-2111 
       17.98        45.40         4.77        71.74         6.48       125.72 

$`11P LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 
       41.00         1.81        49.15         2.01        18.51        11.87 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1362 
       65.49        48.76        21.57        63.98        32.52        44.32 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 
       33.67        76.54        82.36        56.55        41.59        38.37 
TCGA-04-1530 TCGA-04-1638 TCGA-04-1646 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
      119.08        55.40        27.88        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-1662 TCGA-09-1664 
       45.34        29.16         9.47        17.95        89.33        74.89 
TCGA-09-1665 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       41.59        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
       97.55         6.15         6.12        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       71.11        63.09        20.91        26.93        12.46        54.31 
TCGA-10-0927 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       81.47        32.28        11.70         3.88        35.41        35.80 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
        6.21        24.59        44.55         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0760 TCGA-13-0761 
       15.19        17.79         2.47        11.18        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
        8.28        43.82        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 
       69.01        43.36        57.47        47.38        47.84        44.94 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0923 
       37.08        27.68        34.06        21.14        14.89         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 
        6.08        10.88         7.36         6.05         5.92         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 
        4.21         5.33        87.06        98.04        20.68        70.82 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       52.44        73.55         4.24        54.31        37.61        38.37 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       32.84        16.57         4.41         4.14         2.56         3.88 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 
       14.24        12.23        10.78         6.28        23.05        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 
       72.20        27.48        19.07        16.67         2.66        47.54 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       40.54        15.39        26.83        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1116 
       18.87         2.24        51.35        54.51         3.22         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 
       33.30        86.01       129.96         4.27         6.38        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       58.13         0.53        24.95        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 TCGA-24-0975 TCGA-24-0979 
       49.84         2.76         4.50         7.63        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 
        7.66        22.32        54.08        63.55         6.31         6.38 
TCGA-24-1417 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.82         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        5.36        17.36        28.34        19.17        18.67        43.53 
TCGA-24-1436 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
        8.55        12.46       105.99         9.11         3.42         1.18 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       57.37        64.27        16.21        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       58.09        88.50        70.62        39.88        19.53        44.09 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       47.70        25.87        10.26        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 
       38.24         8.32         3.48         3.72         3.81        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 
        5.75         5.49        22.65        30.21        16.41        11.05 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
      151.99        44.84        58.16        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 
       28.18        64.01        44.48         0.79         0.36        31.63 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 
       44.58         0.82        67.36        36.23        16.64        55.86 
TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 
        1.02        31.99        51.06        37.02         1.02        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       33.96         2.99        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 
       20.58        56.94        60.59        51.22        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       13.02        49.05         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 
       42.02         2.96        29.00        30.97        26.96        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
       47.18       101.75        38.53        68.28         0.53        16.90 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 
       18.25        41.95        29.23        17.00        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       39.09        31.23        24.36        22.52        17.29        12.36 
TCGA-29-1776 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       11.84        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 
       65.00        62.47         4.87        42.25        11.84         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       38.07        51.91         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 
       44.91         6.08         1.18        57.57        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       45.57        30.18        22.45        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       28.73        29.06        21.53        22.55         8.55        30.05 
TCGA-36-1578 TCGA-36-1580 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       27.85        24.23        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.91        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       20.52        14.17         6.05        16.14        11.47        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 
        9.07         9.44         7.56         7.46         7.63        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 TCGA-59-2348 
       21.14         1.74        22.32        28.96        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        5.39        11.11         8.05        18.54        27.88         4.34 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1907 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
        9.07        31.30        42.48        48.92        56.58        67.73 
TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 
       15.75         1.97         5.52        14.50         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 TCGA-61-2092 
       39.85        30.64         1.18        45.96         4.80        51.72 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 
       61.64        58.39        60.62        65.49        55.50        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       20.68        44.52        22.22        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.30               0.26 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            125.72             180.16 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            31.745             26.880 
[1] "0.3 - 125.7 (31.7)" "0.3 - 180.2 (26.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
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        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
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        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
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        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
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        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
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        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
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        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
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        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D61V2, continuous
D61V3, multiclass
                    clus
vv                   11P LOSS MUTATED 11P LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           140                410
  PERITONEUM (OVARY)                0                  2
D61V4, continuous
D61V5, multiclass
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  I                  2                 14
  II                 6                 20
  III              115                310
  IV                16                 66
D61V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      1  139
  11P LOSS WILD-TYPE    2  412
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 1                  2
  YES              139                412
D61V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED    117   23
  11P LOSS WILD-TYPE  333   81
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO               117                333
  YES               23                 81

Clustering(62) Variable = 11q loss mutation analysis
D62V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    47  59
  11Q LOSS WILD-TYPE 216 226
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               106                442 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                59                226 
$`11Q LOSS MUTATED`
TCGA-04-1331 TCGA-04-1338 TCGA-04-1356 TCGA-04-1367 TCGA-04-1517 TCGA-04-1536 
       40.24        46.62        49.28        71.47        19.99        29.06 
TCGA-09-0366 TCGA-09-0369 TCGA-09-1666 TCGA-09-2051 TCGA-09-2053 TCGA-10-0926 
       57.73        35.54        57.57        63.09        39.75        25.91 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0937 TCGA-10-0938 TCGA-13-0723 TCGA-13-0730 
       18.48        33.24        15.12        19.86        39.58        17.79 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0804 TCGA-13-0899 TCGA-13-0900 TCGA-13-0904 
       11.18        11.38        35.28        56.15        57.07        48.33 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0913 TCGA-13-0920 TCGA-13-0921 TCGA-13-1404 
       44.94        44.84        29.98        13.81         4.64         6.61 
TCGA-13-1409 TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 
        6.84        54.61        61.71        29.39        22.39        82.88 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1505 TCGA-13-1512 TCGA-13-2060 TCGA-13-2065 
       38.17        49.22         4.21         3.09         8.58         8.75 
TCGA-20-0991 TCGA-20-1683 TCGA-23-1113 TCGA-23-1114 TCGA-23-1122 TCGA-23-2077 
       26.20        25.38        31.20        68.68        39.09       115.89 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0982 TCGA-24-1105 TCGA-24-1463 TCGA-24-1544 
       19.63        11.64        22.32        47.41        72.92        26.96 
TCGA-24-1562 TCGA-24-1567 TCGA-24-1842 TCGA-24-1920 TCGA-24-2019 TCGA-24-2026 
       45.50        17.23         8.32         9.80         4.87        34.82 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2280 TCGA-24-2295 TCGA-24-2298 TCGA-25-1313 
       57.07        36.16        70.45        33.11        53.26        26.93 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1329 TCGA-25-1870 TCGA-25-1871 TCGA-25-2392 
       65.00        36.95         2.96        14.93        24.99         1.02 
TCGA-25-2393 TCGA-29-1688 TCGA-29-1696 TCGA-29-1697 TCGA-29-1703 TCGA-29-1711 
       38.04        78.87        33.70        31.17        59.67        34.62 
TCGA-29-1769 TCGA-29-1777 TCGA-29-2414 TCGA-29-2428 TCGA-29-2434 TCGA-30-1853 
       22.98        12.30        86.17        45.11        11.47        36.26 
TCGA-30-1861 TCGA-30-1866 TCGA-31-1953 TCGA-36-1571 TCGA-36-1581 TCGA-36-2529 
       34.78        36.62         6.71        22.85        24.69        35.05 
TCGA-36-2538 TCGA-57-1582 TCGA-57-1993 TCGA-59-2348 TCGA-61-1724 TCGA-61-1725 
       25.08        24.03        25.05       180.16        20.94        31.40 
TCGA-61-1733 TCGA-61-1743 TCGA-61-1910 TCGA-61-1911 TCGA-61-1917 TCGA-61-1919 
       31.76        43.69        37.02        42.48        43.43        38.17 
TCGA-61-2012 TCGA-61-2018 TCGA-61-2102 TCGA-61-2111 
       30.64        45.40         6.48       125.72 

$`11Q LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 
       41.00         1.81        49.15         2.01        18.51        11.87 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       65.49        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1371 TCGA-04-1514 
       32.52        44.32        33.67        76.54        82.36        56.55 
TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       41.59        38.37       119.08        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       27.88        28.64        64.64        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 
       45.34        29.16         9.47        17.95         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       89.33        74.89        41.59        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2054 
        6.12        35.15         4.50       112.37        71.11        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0927 TCGA-10-0931 TCGA-10-0933 
       26.93        12.46        54.31        81.47        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
        3.88        35.41        35.80         6.21        24.59        44.55 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 
        2.73        12.39        31.07        15.19        55.17         2.47 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       19.36        47.38        47.84        37.08        27.68        34.06 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1405 
       21.14        14.89         6.41         6.08        10.88         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 
        6.05         5.92         4.70         4.21         5.33        87.06 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 TCGA-13-1496 
       98.04        20.68        70.82        52.44        73.55         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 
        4.41         4.77         4.14         2.56         3.88        14.24 
TCGA-13-2059 TCGA-13-2061 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0996 
       12.23        10.78         6.28        23.05        25.94        72.20 
TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       27.48        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
        3.22         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2078 
        6.38        33.47        58.13         0.53        24.95        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 
        7.63        21.80        41.56         7.66        54.08        63.55 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 
       28.34        19.17        18.67        43.53         8.55        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 
       44.09        47.70        25.87        10.26        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       48.33        38.24         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
       11.28         5.75         5.49        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       11.05        81.11       151.99        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 
        0.79         0.36        47.54        31.63        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-25-1312 TCGA-25-1314 
       67.36        36.23        16.64        55.86         1.02        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1321 TCGA-25-1322 
       51.06        37.02         1.02        34.98        33.96         2.99 
TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
       12.00        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
        7.86         0.30        56.94        60.59        35.54        51.22 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2396 TCGA-25-2397 
       18.05        85.05        13.02        49.05         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       26.96        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 
       68.28         0.53        16.90        18.64        18.25        41.95 
TCGA-29-1710 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       29.23        17.00        85.68        66.77        62.93        39.09 
TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 
       31.23        24.36        22.52        17.29        12.36        11.84 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 
       14.93         8.35         7.20         5.36        34.62        65.00 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1714 
       62.47         4.87        42.25        11.84         9.76        38.07 
TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       51.91         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
        6.08         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 
       45.57        30.18        18.77        22.45        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1575 
        2.17        28.73        29.06        21.53        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 
       30.05        25.74        27.85        24.23        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       29.79        25.91        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       18.31        20.52        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.30         9.07         9.44         7.56         7.46         7.63 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 
       11.38        21.14         1.74        22.32        28.96        25.02 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1727 TCGA-61-1728 
        5.39        44.78        11.11         8.05        18.54        27.88 
TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
        4.34        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       33.67         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
        9.07        34.13        31.30        48.92        56.58        67.73 
TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       15.75         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 
       30.61        39.85         1.18        45.96         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2610 
       55.50        76.83        20.68        44.52        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              1.02               0.26 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            180.16             151.99 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            33.470             25.925 
[1] "1.0 - 180.2 (33.5)" "0.3 - 152.0 (25.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
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        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
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        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
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        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D62V2, continuous
D62V3, multiclass
                    clus
vv                   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           106                444
  PERITONEUM (OVARY)                1                  1
D62V4, continuous
D62V5, multiclass
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  I                  1                 15
  II                 7                 19
  III               85                340
  IV                13                 69
D62V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      1  106
  11Q LOSS WILD-TYPE    2  445
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 1                  2
  YES              106                445
D62V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     89   18
  11Q LOSS WILD-TYPE  361   86
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                89                361
  YES               18                 86

Clustering(63) Variable = 12p loss mutation analysis
D63V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    24  25
  12P LOSS WILD-TYPE 239 260
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                49                499 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                25                260 
$`12P LOSS MUTATED`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1364 TCGA-04-1638 TCGA-09-1675 TCGA-09-2044 
        1.81        49.15        33.67        55.40        97.55         6.12 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0766 TCGA-13-0793 TCGA-13-0807 TCGA-13-0891 
        2.47        11.38        21.40        28.70        13.61        69.01 
TCGA-13-0905 TCGA-13-0908 TCGA-13-1403 TCGA-13-1405 TCGA-13-1483 TCGA-13-1489 
       47.84        44.84        10.88         7.36        29.39        82.88 
TCGA-13-1501 TCGA-13-1507 TCGA-13-1512 TCGA-20-0987 TCGA-23-1120 TCGA-23-2072 
       32.84         4.77         3.09        23.05         4.27        24.95 
TCGA-24-0979 TCGA-24-1425 TCGA-24-1435 TCGA-24-1471 TCGA-24-2026 TCGA-24-2036 
       41.56         5.95        43.53         1.18        34.82        64.01 
TCGA-24-2297 TCGA-25-1320 TCGA-25-1632 TCGA-25-2397 TCGA-25-2404 TCGA-29-1688 
       55.86        36.95        56.94        12.00        29.00        78.87 
TCGA-29-1703 TCGA-29-1711 TCGA-29-1776 TCGA-30-1853 TCGA-30-1857 TCGA-30-1861 
       59.67        34.62        11.84        36.26         0.26        34.78 
TCGA-36-2538 TCGA-57-1585 TCGA-61-1727 TCGA-61-1910 TCGA-61-1913 TCGA-61-2008 
       25.08         1.74        18.54        37.02        48.92        30.61 
TCGA-61-2102 
        6.48 

$`12P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 
       40.24        41.00         2.01        46.62        18.51        11.87 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       65.49        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       49.28        32.52        44.32        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       84.20        48.89        27.88        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       31.86        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 
        5.85         3.02         8.55         6.15        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 
       12.39        31.07        15.19        17.79        55.17        11.18 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 
       11.54        34.06        32.25        31.04         8.42        38.93 
TCGA-13-0792 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       36.72        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 
        8.28         8.19        43.82        35.28        35.28        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       67.99        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.38        48.33        44.94        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       29.98        21.14        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.08         6.61         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 
        4.21         5.33        54.61        87.06        61.71        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       20.68        22.39        70.82        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       16.57         4.21         4.41         4.14         2.56         3.88 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       25.94        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 
       68.68         4.57        33.30        86.01       129.96         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 
       39.09        33.47        58.13         0.53       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0980 TCGA-24-0982 
        7.63        19.63        11.64        21.80         7.66        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       54.08        63.55        47.41         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 
        7.99         7.86         0.76         6.25         6.02         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1436 
        4.80        17.36        28.34        19.17        18.67         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       39.88        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       10.26        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
        8.32         3.48         3.72         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2038 
      109.68        14.43        53.95        18.48        28.18        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       33.11        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1322 
       37.02         1.02        34.98        65.00        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
       20.58         7.86         0.30        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       14.93        24.99        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
        1.02        38.04         3.02        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
        2.96        30.97        26.96        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       38.53         0.79        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 
       16.90        18.64        18.25        41.95        29.23        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 
       24.36        22.52        17.29        12.36        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1859 
        9.76        38.07        51.91         2.47        15.68        48.07 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       44.91         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       29.79        25.91        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       18.31        20.52        14.17         6.05        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       14.30         9.07         9.44         7.56         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       24.03        11.38        21.14        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       20.94        31.40        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        1.41         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       34.13        31.30        42.48        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
        3.98        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       60.62        65.49        55.50        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
      125.72        22.22        51.91        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.26               0.30 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             97.55             180.16 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             29.39              27.88 
[1] "0.3 - 97.5 (29.4)"  "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D63V2, continuous
D63V3, multiclass
                    clus
vv                   12P LOSS MUTATED 12P LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            49                501
  PERITONEUM (OVARY)                0                  2
D63V4, continuous
D63V5, multiclass
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  I                  3                 13
  II                 3                 23
  III               30                395
  IV                13                 69
D63V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      0   49
  12P LOSS WILD-TYPE    3  502
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 0                  3
  YES               49                502
D63V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     44    5
  12P LOSS WILD-TYPE  406   99
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                44                406
  YES                5                 99

Clustering(64) Variable = 12q loss mutation analysis
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED    36  35
  12Q LOSS WILD-TYPE 227 250
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                71                477 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                35                250 
$`12Q LOSS MUTATED`
TCGA-04-1335 TCGA-04-1356 TCGA-04-1542 TCGA-04-1638 TCGA-09-1675 TCGA-09-2044 
        1.81        49.28        84.20        55.40        97.55         6.12 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0762 TCGA-13-0766 
       55.17         2.47        11.38        11.54        32.25        21.40 
TCGA-13-0793 TCGA-13-0807 TCGA-13-0885 TCGA-13-0891 TCGA-13-0904 TCGA-13-0905 
       28.70        13.61        91.40        69.01        48.33        47.84 
TCGA-13-0908 TCGA-13-0923 TCGA-13-1405 TCGA-13-1411 TCGA-13-1483 TCGA-13-1489 
       44.84         6.41         7.36         4.21        29.39        82.88 
TCGA-13-1501 TCGA-13-1507 TCGA-13-1512 TCGA-13-2059 TCGA-20-0987 TCGA-23-1120 
       32.84         4.77         3.09        12.23        23.05         4.27 
TCGA-23-2072 TCGA-23-2077 TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1425 
       24.95       115.89         7.66        22.32        63.55         5.95 
TCGA-24-1431 TCGA-24-1471 TCGA-24-1604 TCGA-24-1614 TCGA-24-1920 TCGA-24-1927 
       19.17         1.18        88.34        48.33         9.80        16.41 
TCGA-24-2023 TCGA-24-2026 TCGA-24-2036 TCGA-24-2254 TCGA-24-2297 TCGA-25-1314 
       44.84        34.82        64.01        57.07        55.86        31.99 
TCGA-25-1320 TCGA-25-1632 TCGA-25-2397 TCGA-25-2409 TCGA-29-1688 TCGA-29-1703 
       36.95        56.94        12.00        26.96        78.87        59.67 
TCGA-29-1711 TCGA-29-1776 TCGA-29-2427 TCGA-30-1853 TCGA-30-1857 TCGA-30-1861 
       34.62        11.84        62.47        36.26         0.26        34.78 
TCGA-31-1956 TCGA-36-2538 TCGA-59-2363 TCGA-61-1727 TCGA-61-1734 TCGA-61-1895 
       44.09        25.08         5.39        18.54        28.47         1.41 
TCGA-61-1903 TCGA-61-1913 TCGA-61-1919 TCGA-61-2008 TCGA-61-2104 
       13.02        48.92        38.17        30.61        76.83 

$`12Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       65.46        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       29.06        48.89        27.88        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       31.86        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 
        5.85         3.02         8.55         6.15        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0761 
       12.39        31.07        15.19        17.79        11.18        34.06 
TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0794 TCGA-13-0795 
       31.04         8.42        38.93        36.72        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 
       35.28        35.28        68.91       107.18        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 
       70.39        61.81        67.99        43.36        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 
       57.07        19.36        47.38        44.94        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
        6.08        10.88         6.61         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 
        4.70         5.33        54.61        87.06        61.71        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       20.68        22.39        70.82        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       16.57         4.21         4.41         4.14         2.56         3.88 
TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 
       14.24         8.58        10.78         8.75         6.28        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
        2.93         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
        2.24        51.35        54.51         3.22        31.20        68.68 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 TCGA-23-1122 
        4.57        33.30        86.01       129.96         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       33.47        58.13         0.53        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 
       11.64        21.80        41.56        54.08        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1434 
        6.02         5.36         4.80        17.36        28.34        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       43.53         8.55        72.92        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        9.11         3.42        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       16.21        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1616 
       47.70        25.87        10.26        17.23        90.15        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
        8.32         3.48         3.72         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1923 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 
        5.75         5.49        22.65        30.21        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
        4.87       151.99        58.16       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       18.48        28.18        44.48        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       36.23        16.64        33.11        53.26         1.02        26.93 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 
       51.06        37.02         1.02        34.98        65.00        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 
        0.36        20.58         7.86         0.30        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 
       49.05         1.02        38.04         3.02        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-29-1690 TCGA-29-1691 
       42.02         2.96        29.00        30.97        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
        0.53        16.90        18.64        18.25        41.95        29.23 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       17.00        85.68        66.77        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 
       22.98        24.36        22.52        17.29        12.36        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       65.00        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1859 
        9.76        38.07        51.91         2.47        15.68        48.07 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       44.91         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
        6.71        42.51         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.91        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       20.52        14.17         6.05        16.14        11.47        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
        9.07         9.44         7.56         7.46         7.63        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       11.38        21.14         1.74        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
       34.39         2.14        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1737 
       31.40        27.88         4.34        31.76        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 
       35.80         2.43        33.67        43.69         8.42         5.79 
TCGA-61-1901 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       11.41         9.07        34.13        31.30        37.02        42.48 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 
       56.58        67.73        43.43        15.75         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       14.50        17.98         3.98        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       20.68        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.26               0.30 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            115.89             180.16 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             30.61              27.85 
[1] "0.3 - 115.9 (30.6)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D64V2, continuous
D64V3, multiclass
                    clus
vv                   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            72                478
  PERITONEUM (OVARY)                0                  2
D64V4, continuous
D64V5, multiclass
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  I                  6                 10
  II                 4                 22
  III               46                379
  IV                16                 66
D64V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      0   72
  12Q LOSS WILD-TYPE    3  479
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 0                  3
  YES               72                479
D64V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED     63    9
  12Q LOSS WILD-TYPE  387   95
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                63                387
  YES                9                 95

Clustering(65) Variable = 13q loss mutation analysis
D65V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED   121 126
  13Q LOSS WILD-TYPE 142 159
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               247                301 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               126                159 
$`13Q LOSS MUTATED`
TCGA-04-1335 TCGA-04-1342 TCGA-04-1343 TCGA-04-1347 TCGA-04-1349 TCGA-04-1361 
        1.81        18.51        11.87        63.06        21.57        32.52 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 
       76.54        71.47        56.55        41.59        38.37       119.08 
TCGA-04-1638 TCGA-04-1646 TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 
       55.40        27.88        28.64        36.23        31.86        45.34 
TCGA-09-0366 TCGA-09-1659 TCGA-09-1661 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       57.73         9.96        38.43        57.57        61.87        55.36 
TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-2044 TCGA-09-2050 TCGA-09-2051 
       17.98         3.02         8.55         6.12        71.11        63.09 
TCGA-09-2055 TCGA-10-0925 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 TCGA-10-0936 
       26.93        54.31        81.47        33.24        32.28        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 TCGA-13-0720 TCGA-13-0726 TCGA-13-0751 
       15.12        19.86        24.59        44.55        31.07        55.17 
TCGA-13-0755 TCGA-13-0764 TCGA-13-0792 TCGA-13-0793 TCGA-13-0797 TCGA-13-0799 
        2.47        31.04        36.72        28.70         8.71         7.79 
TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0890 
        8.19        35.28        35.28        13.61        68.91        67.99 
TCGA-13-0891 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       69.01        57.47        57.07        19.36        47.38        48.33 
TCGA-13-0906 TCGA-13-0910 TCGA-13-0916 TCGA-13-0919 TCGA-13-0924 TCGA-13-1404 
       44.94        37.08        21.14        14.89         6.08         6.61 
TCGA-13-1409 TCGA-13-1482 TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 TCGA-13-1492 
        6.84        61.71        29.39        22.39        82.88        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       38.17        49.22        54.31        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1509 TCGA-13-1511 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        4.21         4.14         3.88        10.78         8.75         6.28 
TCGA-20-0991 TCGA-20-1682 TCGA-20-1684 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 
       26.20        27.48        19.07        47.54        40.54        15.39 
TCGA-23-1027 TCGA-23-1029 TCGA-23-1031 TCGA-23-1032 TCGA-23-1114 TCGA-23-1118 
       31.73         8.81        18.87         2.24        68.68        86.01 
TCGA-23-1119 TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 TCGA-23-2077 TCGA-23-2081 
      129.96         6.38        33.47        58.13       115.89        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0980 TCGA-24-1103 
       49.84         2.76         4.70         4.50         7.66        54.08 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1417 TCGA-24-1419 TCGA-24-1424 TCGA-24-1425 
       47.41         6.31         7.82         7.86         6.02         5.95 
TCGA-24-1426 TCGA-24-1428 TCGA-24-1435 TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 
        5.36        17.36        43.53        12.46        45.14         9.11 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1548 TCGA-24-1549 TCGA-24-1552 
       22.19        26.96        57.37        16.21        56.58        41.39 
TCGA-24-1555 TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 TCGA-24-1603 TCGA-24-1614 
       88.50        19.53        44.09        47.70        90.15        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       38.24         8.32         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1850 TCGA-24-1927 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       11.28         5.49        16.41         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2030 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       58.16        34.82        53.95        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2289 TCGA-24-2290 TCGA-25-1313 TCGA-25-1315 
        0.36        47.54        67.36        36.23        26.93        51.06 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1627 TCGA-25-1631 TCGA-25-1633 
       34.98        65.00        33.96         0.36         0.30        60.59 
TCGA-25-1635 TCGA-25-1878 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       51.22        85.05        49.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 
       12.00        19.99        42.02         2.96        29.00        26.96 
TCGA-29-1693 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1703 TCGA-29-1707 
      101.75        31.17        68.28         0.53        59.67        41.95 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1771 TCGA-29-1775 
       66.77        62.93        39.09        31.23        22.52        12.36 
TCGA-29-1776 TCGA-29-1778 TCGA-29-1784 TCGA-29-2427 TCGA-29-2431 TCGA-29-2432 
       11.84        14.93         5.36        62.47        42.25        11.84 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1891 TCGA-31-1953 TCGA-31-1959 
       44.91        34.78        36.62        30.05         6.71         2.17 
TCGA-36-1569 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1580 TCGA-36-1581 
       29.06        22.85        22.55         8.55        24.23        24.69 
TCGA-36-2529 TCGA-36-2534 TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-42-2587 
       35.05        29.79        21.60         2.24        18.31         9.07 
TCGA-57-1584 TCGA-57-1992 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
       21.14        28.96        22.32       116.12         9.40        34.39 
TCGA-59-2372 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1730 
       44.78         8.05        20.94        31.40        18.54         4.34 
TCGA-61-1733 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1901 
       31.76        44.84        35.80         2.43        43.69        11.41 
TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       13.02        34.13        31.30        48.92        56.58        67.73 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-2002 TCGA-61-2012 TCGA-61-2016 
       15.75        38.17         1.97        17.98        30.64         1.18 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2097 TCGA-61-2111 TCGA-61-2113 
       45.40         4.80         4.77        60.62       125.72        22.22 
TCGA-61-2610 
       51.91 

$`13Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1346 
       40.24        41.00        49.15         2.01        46.62        65.49 
TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 
       48.76        63.98        65.46        49.28        44.32        33.67 
TCGA-04-1371 TCGA-04-1517 TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 TCGA-04-1649 
       82.36        19.99        29.06        84.20        48.89        64.64 
TCGA-04-1654 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 TCGA-09-1662 
       47.70        29.16         9.47        17.95        35.54        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1669 TCGA-09-1672 TCGA-09-1675 TCGA-09-2043 
       74.89        41.59        30.48         5.85        97.55         6.15 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2053 TCGA-09-2054 TCGA-09-2056 
       35.15         4.50       112.37        39.75        20.91        12.46 
TCGA-10-0926 TCGA-10-0928 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-13-0714 
       25.91        18.48        11.70         3.88        35.41         6.21 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 
       39.58         2.73        12.39        15.19        17.79        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 
       11.38        11.54        34.06        32.25        21.40         8.42 
TCGA-13-0791 TCGA-13-0794 TCGA-13-0795 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 
       38.93        30.35        19.56         8.12         8.28        43.82 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0893 TCGA-13-0899 TCGA-13-0905 TCGA-13-0908 TCGA-13-0911 TCGA-13-0912 
       43.36        56.15        47.84        44.84        27.68        34.06 
TCGA-13-0913 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-1403 TCGA-13-1405 
       29.98        13.81         4.64         6.41        10.88         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        6.05         5.92         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1491 TCGA-13-1496 
       87.06        98.04        20.68        70.82        52.44         4.24 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1506 TCGA-13-1507 TCGA-13-1510 TCGA-13-1512 
       37.61        38.37         4.41         4.77         2.56         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-20-0987 TCGA-20-0990 TCGA-20-0996 
       14.24        12.23         8.58        23.05        25.94        72.20 
TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 TCGA-23-1026 
       25.38        16.67         2.93         2.66        42.51        26.83 
TCGA-23-1028 TCGA-23-1030 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       49.41        29.10        51.35        54.51         3.22        31.20 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1120 TCGA-23-1122 TCGA-23-1809 TCGA-23-2072 
        4.57        33.30         4.27        39.09         0.53        24.95 
TCGA-23-2078 TCGA-23-2079 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
       87.48        91.66         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0982 TCGA-24-1104 TCGA-24-1416 TCGA-24-1418 TCGA-24-1422 
       41.56        22.32        63.55         6.38         7.99         0.76 
TCGA-24-1423 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1436 
        6.25         4.80        28.34        19.17        18.67         8.55 
TCGA-24-1463 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1546 TCGA-24-1550 
       72.92       105.99         3.42         1.18        64.27        41.06 
TCGA-24-1551 TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1562 TCGA-24-1564 
       51.91        58.09        70.62        39.88        45.50        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 
       10.26        17.23        88.34         5.75         9.80        22.65 
TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 
       30.21        11.05        81.11       109.68        14.43        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       28.18        64.01        44.48        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
        0.82        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1314 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 
       31.99        37.02         1.02        36.95         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 
        2.96        18.58        18.02        15.78        20.58         7.86 
TCGA-25-1632 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-2042 
       56.94        35.54        14.93        24.99        18.05        13.02 
TCGA-25-2398 TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 
       45.01        30.97        78.87        44.71        47.18        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1710 
        0.79        33.70        16.90        18.64        18.25        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1769 TCGA-29-1770 TCGA-29-1774 
       34.62        17.00        85.68        22.98        24.36        17.29 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
       12.30         8.35         7.20        34.62        86.17        65.00 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       45.11         4.87        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1862 
       36.26         2.47        15.68         0.26        48.07         6.08 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        1.18        57.57        24.26        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1570 
       18.77        22.45        42.51        44.09        28.73        21.53 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-2530 TCGA-36-2532 TCGA-36-2537 
       30.05        25.74        27.85        33.01        29.49        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2544 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
       25.08        23.80        20.98        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       16.14        11.47        14.30         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 
        7.63        24.03        11.38         1.74        22.32        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 
       25.02       180.16        80.12         2.14         5.39        11.11 
TCGA-61-1728 TCGA-61-1734 TCGA-61-1736 TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 
       27.88        28.47        48.79        33.67         1.41         8.42 
TCGA-61-1900 TCGA-61-1904 TCGA-61-1910 TCGA-61-1911 TCGA-61-1917 TCGA-61-1998 
        5.79         9.07        37.02        42.48        43.43         5.52 
TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2017 TCGA-61-2092 
       14.50         3.98        30.61        39.85        45.96        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       71.74        61.64        58.39        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       76.83        20.68        44.52        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.30               0.26 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            151.99             180.16 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             31.04              25.74 
[1] "0.3 - 152.0 (31.0)" "0.3 - 180.2 (25.7)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D65V2, continuous
D65V3, multiclass
                    clus
vv                   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           248                302
  PERITONEUM (OVARY)                2                  0
D65V4, continuous
D65V5, multiclass
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  I                 11                  5
  II                13                 13
  III              186                239
  IV                40                 42
D65V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      1  250
  13Q LOSS WILD-TYPE    2  301
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 1                  2
  YES              250                301
D65V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED    200   51
  13Q LOSS WILD-TYPE  250   53
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO               200                250
  YES               51                 53

Clustering(66) Variable = 14q loss mutation analysis
D66V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    67  90
  14Q LOSS WILD-TYPE 196 195
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               157                391 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                90                195 
$`14Q LOSS MUTATED`
TCGA-04-1335 TCGA-04-1343 TCGA-04-1346 TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 
        1.81        11.87        65.49        65.46        49.28        44.32 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1525 TCGA-04-1542 TCGA-04-1638 TCGA-04-1648 
       33.67        76.54        38.37        84.20        55.40        28.64 
TCGA-04-1649 TCGA-04-1655 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1670 
       64.64        45.34        35.54         9.96        38.43        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-2048 TCGA-09-2051 TCGA-09-2053 TCGA-09-2056 
        5.85         3.02         4.50        63.09        39.75        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0938 TCGA-13-0717 TCGA-13-0723 TCGA-13-0726 
       54.31        25.91        19.86        24.59        39.58        31.07 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0766 
       17.79        55.17        11.18        11.38        34.06        21.40 
TCGA-13-0792 TCGA-13-0795 TCGA-13-0803 TCGA-13-0884 TCGA-13-0885 TCGA-13-0891 
       36.72        19.56        43.82       107.18        91.40        69.01 
TCGA-13-0906 TCGA-13-0913 TCGA-13-0919 TCGA-13-0921 TCGA-13-1405 TCGA-13-1481 
       44.94        29.98        14.89         4.64         7.36        87.06 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1496 TCGA-13-1497 TCGA-13-1504 
       22.39        82.88        52.44         4.24        54.31        16.57 
TCGA-13-1507 TCGA-13-1510 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-1683 
        4.77         2.56        10.78         8.75         6.28        25.38 
TCGA-20-1684 TCGA-20-1687 TCGA-23-1024 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 
       19.07         2.66        15.39        31.73        49.41        29.10 
TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1117 TCGA-23-1118 
       18.87        51.35        54.51         3.22        33.30        86.01 
TCGA-23-1119 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2077 TCGA-23-2081 
      129.96        39.09        33.47        24.95       115.89        77.00 
TCGA-23-2643 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 
        4.70        19.63        11.64        21.80        41.56        22.32 
TCGA-24-1105 TCGA-24-1424 TCGA-24-1427 TCGA-24-1434 TCGA-24-1463 TCGA-24-1466 
       47.41         6.02         4.80        18.67        72.92        45.14 
TCGA-24-1469 TCGA-24-1471 TCGA-24-1544 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        9.11         1.18        26.96        64.27        16.21        56.58 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1565 TCGA-24-1604 TCGA-24-1843 TCGA-24-1924 
       51.91        41.39        10.26        88.34         3.48        30.21 
TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2260 TCGA-24-2267 
        4.87        44.84        58.16        34.82        36.16        47.54 
TCGA-24-2295 TCGA-25-1320 TCGA-25-1321 TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 
       33.11        36.95        33.96         0.30        56.94        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2393 TCGA-25-2400 TCGA-25-2404 
       51.22        14.93        24.99        38.04        42.02        29.00 
TCGA-29-1695 TCGA-29-1697 TCGA-29-1698 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 
        0.79        31.17        68.28        41.95        29.23        17.00 
TCGA-29-1763 TCGA-29-1769 TCGA-29-1771 TCGA-29-2427 TCGA-29-2434 TCGA-30-1718 
       66.77        22.98        22.52        62.47        11.47        51.91 
TCGA-30-1855 TCGA-30-1859 TCGA-30-1861 TCGA-30-1887 TCGA-31-1944 TCGA-31-1953 
        2.47        48.07        34.78        24.26        45.57         6.71 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-2534 TCGA-36-2543 TCGA-42-2587 
       22.85        22.55         8.55        29.79         2.24         9.07 
TCGA-42-2589 TCGA-42-2591 TCGA-57-1992 TCGA-61-1733 TCGA-61-1736 TCGA-61-1741 
        7.56         7.63        28.96        31.76        48.79        33.67 
TCGA-61-1906 TCGA-61-1917 TCGA-61-2000 TCGA-61-2009 TCGA-61-2088 TCGA-61-2102 
       34.13        43.43        14.50        39.85         4.77         6.48 
TCGA-61-2109 
       20.68 

$`14Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00        49.15         2.01        46.62        18.51 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1367 
       63.06        48.76        21.57        63.98        32.52        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 
       82.36        56.55        41.59        19.99       119.08        29.06 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 
       48.89        27.88        36.23        31.86        47.70        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
        9.47        57.73        17.95        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1674 TCGA-09-1675 
       57.57        61.87        55.36        30.48         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2054 
        6.15         6.12        35.15       112.37        71.11        20.91 
TCGA-09-2055 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       26.93        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0720 
        3.88        35.41        35.80        15.12         6.21        44.55 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0755 TCGA-13-0760 TCGA-13-0762 
        2.73        12.39        15.19         2.47        11.54        32.25 
TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 
       31.04         8.42        38.93        28.70        30.35         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 
        7.79         8.12         8.28         8.19        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
       13.61        68.91        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       67.99        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        47.84        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0916 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       34.06        21.14        13.81         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        6.61         6.05         5.92         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
        5.33        54.61        61.71        29.39        98.04        20.68 
TCGA-13-1488 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1498 TCGA-13-1499 
       70.82        73.55        38.17        49.22        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1511 
       13.97        32.84         4.21         4.41         4.14         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-20-0987 TCGA-20-0990 
        3.09        14.24        12.23         8.58        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 
       26.20        72.20        27.48        16.67         2.93        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1029 TCGA-23-1032 TCGA-23-1113 
       42.51        40.54        26.83         8.81         2.24        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1120 TCGA-23-1121 TCGA-23-1124 TCGA-23-1809 
       68.68         4.57         4.27         6.38        58.13         0.53 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 
       87.48        91.66        49.84         2.76         4.50         7.63 
TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
        7.66        54.08        63.55         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 
        7.99         7.86         0.76         6.25         5.95         5.36 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 
       17.36        28.34        19.17        43.53         8.55        12.46 
TCGA-24-1467 TCGA-24-1470 TCGA-24-1474 TCGA-24-1545 TCGA-24-1550 TCGA-24-1553 
      105.99         3.42        22.19        57.37        41.06        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 
       47.70        25.87        17.23        90.15        48.33        38.24 
TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        8.32         3.72         3.81         4.37        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        5.49         9.80        22.65        16.41        11.05        81.11 
TCGA-24-2020 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
      151.99       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 
       64.01        44.48        57.07         0.79         0.36        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1322 TCGA-25-1323 
       37.02         1.02        34.98        65.00         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1633 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
        7.86        60.59        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 
        1.02         3.02        12.00        45.01        19.99         2.96 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       30.97        26.96        78.87        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1696 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
       38.53        33.70         0.53        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       18.25        34.62        85.68        62.93        39.09        31.23 
TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       24.36        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1714 
       45.11         4.87        42.25        11.84         9.76        38.07 
TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 
       36.26        15.68         0.26        44.91         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 TCGA-31-1950 
        1.18        57.57        30.05        48.79        30.18        18.77 
TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
       22.45        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
       21.53        30.05        25.74        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       35.05        33.01        29.49        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 
       21.60        20.98        18.31        20.52        14.17         6.05 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2590 TCGA-57-1582 
       16.14        11.47        14.30         9.44         7.46        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 
       11.38        21.14         1.74        22.32        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1734 TCGA-61-1737 
       31.40        18.54        27.88         4.34        28.47        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
       35.80         2.43        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       11.41        13.02         9.07        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       48.92        56.58        67.73        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 
        5.52        17.98         3.98        30.61        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96        45.40         4.80        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 TCGA-61-2110 
       58.39        60.62        65.49        55.50        76.83        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
      125.72        22.22        51.91        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.30               0.26 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            129.96             180.16 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             30.21              26.93 
[1] "0.3 - 130.0 (30.2)" "0.3 - 180.2 (26.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
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        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D66V2, continuous
D66V3, multiclass
                    clus
vv                   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           160                390
  PERITONEUM (OVARY)                0                  2
D66V4, continuous
D66V5, multiclass
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  I                  2                 14
  II                 5                 21
  III              134                291
  IV                16                 66
D66V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      0  160
  14Q LOSS WILD-TYPE    3  391
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 0                  3
  YES              160                391
D66V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED    128   32
  14Q LOSS WILD-TYPE  322   72
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO               128                322
  YES               32                 72

Clustering(67) Variable = 15q loss mutation analysis
D67V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    90 119
  15Q LOSS WILD-TYPE 173 166
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               209                339 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               119                166 
$`15Q LOSS MUTATED`
TCGA-04-1331 TCGA-04-1338 TCGA-04-1342 TCGA-04-1347 TCGA-04-1350 TCGA-04-1367 
       40.24        46.62        18.51        63.06        63.98        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 TCGA-04-1646 
       82.36        56.55        19.99        38.37        29.06        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1655 TCGA-09-0365 TCGA-09-1661 TCGA-09-1667 
       28.64        64.64        45.34         9.47        38.43        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-2050 TCGA-09-2051 
       55.36        30.48        17.98         8.55        71.11        63.09 
TCGA-09-2054 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-13-0717 
       20.91        54.31        25.91        81.47        33.24        24.59 
TCGA-13-0723 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       39.58        17.79        55.17        11.18        11.38        11.54 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0807 TCGA-13-0885 TCGA-13-0887 TCGA-13-0889 
       28.70        30.35        13.61        91.40        66.64        61.81 
TCGA-13-0891 TCGA-13-0910 TCGA-13-0911 TCGA-13-0921 TCGA-13-1405 TCGA-13-1407 
       69.01        37.08        27.68         4.64         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1482 TCGA-13-1484 
        5.92         6.84         4.70         4.21        61.71        98.04 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 
       22.39        70.82        82.88        52.44        38.17        49.22 
TCGA-13-1496 TCGA-13-1506 TCGA-13-1507 TCGA-13-1510 TCGA-20-0990 TCGA-20-1682 
        4.24         4.41         4.77         2.56        25.94        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-23-1022 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 
       25.38        19.07        42.51        29.10         2.24        51.35 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1123 TCGA-23-2077 TCGA-23-2084 
       54.51        31.20        68.68        33.47       115.89        49.84 
TCGA-23-2641 TCGA-23-2645 TCGA-24-0968 TCGA-24-0979 TCGA-24-0982 TCGA-24-1104 
        2.76         4.50        19.63        41.56        22.32        63.55 
TCGA-24-1105 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1424 TCGA-24-1426 
       47.41         7.82         7.99         0.76         6.02         5.36 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1463 TCGA-24-1466 
       17.36        28.34        19.17        18.67        72.92        45.14 
TCGA-24-1469 TCGA-24-1471 TCGA-24-1544 TCGA-24-1548 TCGA-24-1550 TCGA-24-1552 
        9.11         1.18        26.96        16.21        41.06        41.39 
TCGA-24-1553 TCGA-24-1557 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 
       58.09        39.88        90.15        48.33        38.24         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1850 TCGA-24-1924 TCGA-24-2019 TCGA-24-2026 
        3.72         3.81         5.49        30.21         4.87        34.82 
TCGA-24-2030 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2280 
       53.95        64.01        57.07        36.16         0.79        70.45 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       16.64        33.11        55.86        53.26         1.02        26.93 
TCGA-25-1314 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       31.99        37.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        2.99        12.00         2.96         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1871 TCGA-25-2396 TCGA-25-2404 TCGA-29-1693 TCGA-29-1695 
       35.54        24.99         3.02        29.00       101.75         0.79 
TCGA-29-1698 TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       68.28        18.64        59.67        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 
       17.00        85.68        66.77        62.93        39.09        22.98 
TCGA-29-1770 TCGA-29-1774 TCGA-29-1777 TCGA-29-1784 TCGA-29-2414 TCGA-29-2428 
       24.36        17.29        12.30         5.36        86.17        45.11 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1718 TCGA-30-1856 TCGA-30-1859 TCGA-30-1860 
       11.47        38.07        51.91        15.68        48.07        44.91 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1950 
       36.62         1.18        24.26        30.05        48.79        18.77 
TCGA-31-1953 TCGA-36-1581 TCGA-36-2529 TCGA-36-2543 TCGA-36-2545 TCGA-36-2548 
        6.71        24.69        35.05         2.24        18.31        14.17 
TCGA-36-2551 TCGA-42-2589 TCGA-57-1583 TCGA-57-1993 TCGA-59-2348 TCGA-59-2350 
       16.14         7.56        11.38        25.05       180.16        22.32 
TCGA-59-2351 TCGA-61-1724 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1737 
      116.12        20.94        18.54        27.88        31.76        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1901 TCGA-61-1906 TCGA-61-1917 
       35.80         2.43        33.67        11.41        34.13        43.43 
TCGA-61-1919 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2096 TCGA-61-2098 
       38.17         3.98        30.61        30.64        58.39        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        44.52       125.72 

$`15Q LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1343 TCGA-04-1346 
       41.00         1.81        49.15         2.01        11.87        65.49 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 
       48.76        21.57        65.46        49.28        32.52        44.32 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1516 TCGA-04-1530 TCGA-04-1542 TCGA-04-1638 
       33.67        76.54        41.59       119.08        84.20        55.40 
TCGA-04-1644 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0366 
       48.89        36.23        31.86        47.70        29.16        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       17.95        35.54         9.96        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
       57.57         5.85         3.02        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 
       35.15         4.50       112.37        39.75        26.93        12.46 
TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       18.48        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 
       15.12        19.86         6.21        44.55         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0755 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       31.07        15.19         2.47        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0795 TCGA-13-0797 
       21.40         8.42        38.93        36.72        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 TCGA-13-0888 TCGA-13-0890 
       35.28        68.91       107.18        74.27        70.39        67.99 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0912 TCGA-13-0913 
       48.33        47.84        44.94        44.84        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       21.14        14.89        13.81         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1483 TCGA-13-1485 
        6.61         5.33        54.61        87.06        29.39        20.68 
TCGA-13-1492 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
       73.55        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
       16.57         4.21         4.14         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       12.23         8.58        10.78         8.75         6.28        23.05 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       26.20        72.20        16.67         2.93         2.66        47.54 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1031 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       18.87         3.22         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        4.27         6.38        39.09        58.13         0.53        24.95 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2643 TCGA-24-0966 TCGA-24-0970 
       87.48        91.66        77.00         4.70         7.63        11.64 
TCGA-24-0975 TCGA-24-0980 TCGA-24-1103 TCGA-24-1413 TCGA-24-1416 TCGA-24-1419 
       21.80         7.66        54.08         6.31         6.38         7.86 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1427 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 
        6.25         5.95         4.80        43.53         8.55        12.46 
TCGA-24-1467 TCGA-24-1470 TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 
      105.99         3.42        22.19        57.37        64.27        56.58 
TCGA-24-1551 TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       51.91        88.50        70.62        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 TCGA-24-1842 
       47.70        25.87        10.26        17.23        88.34         8.32 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
        4.37        11.28         5.75         9.80        22.65        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       11.05        81.11       151.99        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2038 TCGA-24-2262 TCGA-24-2267 
       14.43        18.48        28.18        44.48         0.36        47.54 
TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-25-1315 
       31.63        44.58         0.82        67.36        36.23        51.06 
TCGA-25-1317 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        1.02        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1635 TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
        7.86        51.22        14.93        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       49.05         1.02        38.04        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
       42.02         2.96        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 
       47.18        38.53        33.70        31.17         0.53        16.90 
TCGA-29-1705 TCGA-29-1768 TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 
       18.25        31.23        22.52        12.36        11.84        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 
        8.35         7.20        34.62        65.00        62.47         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 
       42.25        11.84         9.76        36.26         2.47         0.26 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1880 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 
       34.78         6.08        57.57        45.57        30.18        22.45 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       24.23        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 TCGA-36-2547 TCGA-36-2549 TCGA-36-2552 
       23.80        21.60        20.98        20.52         6.05        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
       14.30         9.07         9.44         7.46         7.63        24.03 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 TCGA-59-2349 
       21.14         1.74        22.32        28.96        25.02        80.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1725 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1743 
        8.05        31.40         4.34        28.47        48.79        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 
        1.41         8.42         5.79        13.02         9.07        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 
       37.02        42.48        48.92        56.58        67.73        15.75 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2009 TCGA-61-2016 
        1.97         5.52        14.50        17.98        39.85         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2097 TCGA-61-2109 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       61.64        60.62        20.68        22.22        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.30               0.26 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            180.16             151.99 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             30.61              24.95 
[1] "0.3 - 180.2 (30.6)" "0.3 - 152.0 (24.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D67V2, continuous
D67V3, multiclass
                    clus
vv                   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           210                340
  PERITONEUM (OVARY)                2                  0
D67V4, continuous
D67V5, multiclass
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  I                  2                 14
  II                 8                 18
  III              164                261
  IV                35                 47
D67V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      2  211
  15Q LOSS WILD-TYPE    1  340
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 2                  1
  YES              211                340
D67V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED    167   46
  15Q LOSS WILD-TYPE  283   58
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO               167                283
  YES               46                 58

Clustering(68) Variable = 16p loss mutation analysis
D68V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED   118 137
  16P LOSS WILD-TYPE 145 148
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               255                293 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               137                148 
$`16P LOSS MUTATED`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 TCGA-04-1347 
       40.24        41.00         2.01        46.62        11.87        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1362 TCGA-04-1364 TCGA-04-1516 TCGA-04-1517 
       21.57        63.98        44.32        33.67        41.59        19.99 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 TCGA-04-1652 TCGA-09-0367 TCGA-09-1659 
       55.40        48.89        64.64        31.86        17.95         9.96 
TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 
       41.59        61.87        55.36        17.98         3.02        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2049 TCGA-09-2053 TCGA-09-2054 TCGA-10-0926 
        6.15         6.12       112.37        39.75        20.91        25.91 
TCGA-10-0928 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       18.48        35.41        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 TCGA-13-0761 
       44.55        15.19        17.79        55.17        11.18        34.06 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
       31.04        21.40        38.93        28.70        30.35        19.56 
TCGA-13-0801 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
        8.28        35.28        13.61       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 TCGA-13-0903 TCGA-13-0904 
       66.64        69.01        43.36        56.15        47.38        48.33 
TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 
       44.94        37.08        27.68        34.06        21.14        14.89 
TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
       13.81         6.41         6.08         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 
        5.92         4.70         4.21        82.88        52.44        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1500 TCGA-13-1505 TCGA-13-1507 
       49.22         4.24        54.31        13.97         4.21         4.77 
TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2065 TCGA-20-0990 
        4.14         3.88         3.09        14.24         8.75        25.94 
TCGA-20-1683 TCGA-20-1687 TCGA-23-1022 TCGA-23-1024 TCGA-23-1027 TCGA-23-1028 
       25.38         2.66        42.51        15.39        31.73        49.41 
TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
       29.10         2.24        51.35         3.22        31.20        68.68 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 
      129.96         4.27         6.38        39.09        33.47        24.95 
TCGA-23-2078 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-1104 TCGA-24-1105 
       87.48        11.64        21.80        41.56        63.55        47.41 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 TCGA-24-1422 TCGA-24-1426 TCGA-24-1431 
        6.38         7.82         7.86         0.76         5.36        19.17 
TCGA-24-1463 TCGA-24-1466 TCGA-24-1471 TCGA-24-1474 TCGA-24-1548 TCGA-24-1552 
       72.92        45.14         1.18        22.19        16.21        41.39 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 TCGA-24-1843 
       19.53        44.09        45.50        47.70        17.23         3.48 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1923 TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 
        4.37        11.28        22.65        30.21        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2262 TCGA-24-2267 TCGA-24-2280 TCGA-24-2288 
       28.18        64.01         0.36        47.54        70.45         0.82 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 
       36.23        16.64        33.11        55.86        53.26        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
       31.99        51.06        37.02        34.98        65.00        36.95 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1632 TCGA-25-1635 TCGA-25-1870 
        2.99        12.00         2.96        56.94        51.22        14.93 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       13.02        49.05        38.04         3.02        12.00        45.01 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 TCGA-29-1688 TCGA-29-1693 
       42.02         2.96        29.00        26.96        78.87       101.75 
TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1762 TCGA-29-1764 
       31.17         0.53        16.90        59.67        85.68        62.93 
TCGA-29-1766 TCGA-29-1769 TCGA-29-1771 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 
       39.09        22.98        22.52        12.30         8.35         7.20 
TCGA-29-1785 TCGA-29-2428 TCGA-29-2431 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 
       34.62        45.11        42.25        38.07        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 
       15.68         0.26        44.91        34.78        36.62         1.18 
TCGA-30-1887 TCGA-31-1944 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       24.26        45.57        18.77        22.45         6.71        42.51 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 
       28.73        29.06        21.53        22.85         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-2532 TCGA-36-2543 TCGA-36-2548 TCGA-36-2551 
       25.74        27.85        29.49         2.24        14.17        16.14 
TCGA-42-2589 TCGA-42-2590 TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-59-2350 
        7.56         7.46        21.14        28.96        25.05        22.32 
TCGA-59-2352 TCGA-59-2355 TCGA-59-2363 TCGA-61-1725 TCGA-61-1730 TCGA-61-1736 
        9.40         2.14         5.39        31.40         4.34        48.79 
TCGA-61-1737 TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 TCGA-61-1904 TCGA-61-1906 
       44.84        33.67         1.41         8.42         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1914 TCGA-61-1919 TCGA-61-1995 TCGA-61-2003 
       31.30        37.02        56.58        38.17         1.97         3.98 
TCGA-61-2008 TCGA-61-2088 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 TCGA-61-2109 
       30.61         4.77        60.62        65.49         6.48        20.68 
TCGA-61-2113 TCGA-61-2611 TCGA-61-2613 
       22.22        15.88        31.07 

$`16P LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1342 TCGA-04-1346 TCGA-04-1348 TCGA-04-1351 
        1.81        49.15        18.51        65.49        48.76        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       49.28        32.52        76.54        71.47        82.36        56.55 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1646 TCGA-04-1648 
       38.37       119.08        29.06        84.20        27.88        28.64 
TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       36.23        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0369 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1669 
       35.54        38.43        89.33        74.89        57.57        30.48 
TCGA-09-1672 TCGA-09-1674 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 
        5.85         8.55        35.15         4.50        71.11        63.09 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 
       26.93        12.46        54.31        81.47        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0936 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
       11.70         3.88        35.80        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0762 TCGA-13-0768 
       31.07         2.47        11.38        11.54        32.25         8.42 
TCGA-13-0792 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0803 
       36.72         8.71         7.79         8.12         8.19        43.82 
TCGA-13-0804 TCGA-13-0883 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0897 
       35.28        68.91        70.39        61.81        67.99        57.47 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0905 TCGA-13-0908 TCGA-13-0913 TCGA-13-0921 
       57.07        19.36        47.84        44.84        29.98         4.64 
TCGA-13-1403 TCGA-13-1409 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
       10.88         6.84         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1492 
       29.39        98.04        20.68        22.39        70.82        73.55 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1510 
       37.61        38.37        32.84        16.57         4.41         2.56 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 
       12.23         8.58        10.78         6.28        23.05        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 
       72.20        27.48        19.07        16.67         2.93        47.54 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1029 TCGA-23-1031 TCGA-23-1110 TCGA-23-1116 
       40.54        26.83         8.81        18.87        54.51         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 
       33.30        86.01        58.13         0.53       115.89        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1413 TCGA-24-1418 
       19.63         7.66        22.32        54.08         6.31         7.99 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        6.25         6.02         5.95         4.80        17.36        28.34 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 
       18.67        43.53         8.55        12.46       105.99         9.11 
TCGA-24-1470 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 
        3.42        26.96        57.37        64.27        56.58        41.06 
TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1564 
       51.91        58.09        88.50        70.62        39.88        25.87 
TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       10.26        90.15        88.34        48.33        38.24         8.32 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1927 
        3.72         3.81         5.75         5.49         9.80        16.41 
TCGA-24-1928 TCGA-24-2030 TCGA-24-2033 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       11.05        53.95        18.48        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2271 TCGA-24-2281 TCGA-24-2289 TCGA-25-1312 TCGA-25-1317 
        0.79        31.63        44.58        67.36         1.02         1.02 
TCGA-25-1321 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
       33.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1871 TCGA-25-1877 
        7.86         0.30        60.59        35.54        24.99        18.05 
TCGA-25-1878 TCGA-25-2392 TCGA-25-2399 TCGA-25-2408 TCGA-29-1690 TCGA-29-1691 
       85.05         1.02        19.99        30.97        44.71        47.18 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1698 TCGA-29-1702 TCGA-29-1705 
       38.53         0.79        33.70        68.28        18.64        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1763 TCGA-29-1768 
       41.95        29.23        34.62        17.00        66.77        31.23 
TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1784 
       24.36        17.29        12.36        11.84        14.93         5.36 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 
       86.17        65.00        62.47         4.87        11.84        11.47 
TCGA-29-2436 TCGA-30-1718 TCGA-30-1859 TCGA-30-1862 TCGA-30-1880 TCGA-30-1891 
        9.76        51.91        48.07         6.08        57.57        30.05 
TCGA-30-1892 TCGA-31-1946 TCGA-31-1956 TCGA-31-1959 TCGA-36-1574 TCGA-36-1580 
       48.79        30.18        44.09         2.17        22.55        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       24.69        35.05        33.01        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 
       23.80        21.60        20.98        18.31        20.52         6.05 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2591 TCGA-57-1582 
       11.47        14.30         9.07         9.44         7.63        24.03 
TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       11.38         1.74        22.32        25.02       180.16        80.12 
TCGA-59-2351 TCGA-59-2354 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
      116.12        34.39        44.78        11.11         8.05        20.94 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1738 TCGA-61-1740 
       18.54        27.88        31.76        28.47        35.80         2.43 
TCGA-61-1743 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1911 TCGA-61-1913 
       43.69         5.79        11.41        13.02        42.48        48.92 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       67.73        43.43        15.75         5.52        14.50        17.98 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2101 TCGA-61-2104 
       51.72        71.74        61.64        58.39        55.50        76.83 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2610 TCGA-61-2612 TCGA-61-2614 
       44.52       125.72        51.91         6.35         8.58 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.26               0.30 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            151.99             180.16 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             27.85              28.47 
[1] "0.3 - 152.0 (27.9)" "0.3 - 180.2 (28.5)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
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        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
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        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
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        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D68V2, continuous
D68V3, multiclass
                    clus
vv                   16P LOSS MUTATED 16P LOSS WILD-TYPE
  OMENTUM                           2                  0
  OVARY                           255                295
  PERITONEUM (OVARY)                1                  1
D68V4, continuous
D68V5, multiclass
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  I                  6                 10
  II                 9                 17
  III              195                230
  IV                45                 37
D68V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      2  256
  16P LOSS WILD-TYPE    1  295
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 2                  1
  YES              256                295
D68V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED    204   54
  16P LOSS WILD-TYPE  246   50
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO               204                246
  YES               54                 50

Clustering(69) Variable = 16q loss mutation analysis
D69V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED   162 181
  16Q LOSS WILD-TYPE 101 104
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               343                205 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               181                104 
$`16Q LOSS MUTATED`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 
       11.87        65.49        63.06        21.57        63.98        49.28 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 
       44.32        33.67        76.54        82.36        41.59        19.99 
TCGA-04-1525 TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 TCGA-04-1652 TCGA-04-1654 
       38.37        55.40        48.89        64.64        31.86        47.70 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1665 
       57.73        17.95         9.96        38.43        89.33        41.59 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-1675 
       61.87        55.36        30.48        17.98         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-09-2053 
        6.15         6.12         4.50       112.37        63.09        39.75 
TCGA-09-2054 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 
       20.91        54.31        25.91        81.47        18.48        32.28 
TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.41        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       31.07        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 TCGA-13-0793 
       34.06        32.25        31.04        21.40        38.93        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0801 TCGA-13-0802 TCGA-13-0804 
       30.35        19.56         8.71         8.28         8.19        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 
       66.64        70.39        61.81        69.01        43.36        56.15 
TCGA-13-0903 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.38        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       21.14        14.89        13.81         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 
        6.61         7.36         6.05         5.92         4.70         4.21 
TCGA-13-1481 TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       87.06        29.39        22.39        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 
       13.97         4.21         4.77         4.14         3.88         3.09 
TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-20-0987 TCGA-20-0990 
       14.24         8.58        10.78         8.75        23.05        25.94 
TCGA-20-0991 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       26.20        27.48        25.38        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       42.51        40.54        31.73        49.41         8.81        29.10 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 
        2.24        51.35         3.22        31.20        68.68        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 
      129.96         4.27         6.38        39.09        33.47        24.95 
TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       87.48        77.00         2.76         4.70         4.50         7.63 
TCGA-24-0970 TCGA-24-0979 TCGA-24-0982 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       11.64        41.56        22.32        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 
        6.38         7.82         7.99         7.86         0.76         5.95 
TCGA-24-1426 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        5.36        17.36        28.34        19.17        18.67        43.53 
TCGA-24-1463 TCGA-24-1466 TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 TCGA-24-1548 
       72.92        45.14         1.18        22.19        57.37        16.21 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       41.06        51.91        41.39        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1843 TCGA-24-1844 
       47.70        10.26        17.23        90.15         3.48         3.72 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 
        4.37        11.28        22.65        30.21        16.41        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 
        4.87       151.99        44.84        58.16        34.82        14.43 
TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       53.95        28.18        64.01        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2288 TCGA-24-2293 TCGA-24-2295 
       47.54        31.63        70.45         0.82        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 
       37.02        34.98        65.00        36.95         2.99        12.00 
TCGA-25-1329 TCGA-25-1632 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 
        2.96        56.94        51.22        14.93        24.99        13.02 
TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       49.05        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 TCGA-29-1691 TCGA-29-1693 
       42.02         2.96        29.00        26.96        47.18       101.75 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       59.67        17.00        85.68        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 
       22.98        22.52        12.30         8.35         7.20        34.62 
TCGA-29-2414 TCGA-29-2428 TCGA-29-2431 TCGA-29-2432 TCGA-30-1714 TCGA-30-1853 
       86.17        45.11        42.25        11.84        38.07        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 
        2.47        15.68         0.26        44.91        34.78        36.62 
TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1950 TCGA-31-1951 
        1.18        24.26        48.79        45.57        18.77        22.45 
TCGA-31-1953 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 
        6.71        28.73        29.06        21.53        22.85         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2529 TCGA-36-2532 
       30.05        25.74        27.85        24.23        35.05        29.49 
TCGA-36-2534 TCGA-36-2542 TCGA-36-2543 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 
       29.79        21.60         2.24        14.17        16.14        11.47 
TCGA-42-2589 TCGA-42-2590 TCGA-57-1582 TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 
        7.56         7.46        24.03        21.14        28.96        25.05 
TCGA-57-1994 TCGA-59-2350 TCGA-59-2352 TCGA-59-2355 TCGA-59-2363 TCGA-61-1725 
       25.02        22.32         9.40         2.14         5.39        31.40 
TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1737 TCGA-61-1741 
       18.54         4.34        31.76        48.79        44.84        33.67 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        1.41         8.42         5.79         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       37.02        48.92        56.58        38.17         1.97         5.52 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2087 TCGA-61-2088 TCGA-61-2097 TCGA-61-2098 
        3.98        30.61         4.80         4.77        60.62        65.49 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2113 TCGA-61-2611 TCGA-61-2612 
        6.48        76.83        20.68        22.22        15.88         6.35 
TCGA-61-2613 
       31.07 

$`16Q LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1348 TCGA-04-1351 TCGA-04-1361 TCGA-04-1367 TCGA-04-1514 
        1.81        48.76        65.46        32.52        71.47        56.55 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1646 TCGA-04-1648 TCGA-04-1651 
      119.08        29.06        84.20        27.88        28.64        36.23 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0369 TCGA-09-1664 TCGA-09-1666 
       45.34        29.16         9.47        35.54        74.89        57.57 
TCGA-09-1672 TCGA-09-1673 TCGA-09-2045 TCGA-09-2050 TCGA-09-2055 TCGA-09-2056 
        5.85         3.02        35.15        71.11        26.93        12.46 
TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0936 TCGA-13-0723 TCGA-13-0724 
       33.24        11.70         3.88        35.80        39.58         2.73 
TCGA-13-0725 TCGA-13-0758 TCGA-13-0760 TCGA-13-0768 TCGA-13-0792 TCGA-13-0799 
       12.39        11.38        11.54         8.42        36.72         7.79 
TCGA-13-0800 TCGA-13-0803 TCGA-13-0890 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 
        8.12        43.82        67.99        57.47        57.07        19.36 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0913 TCGA-13-0921 TCGA-13-1409 TCGA-13-1412 
       48.33        47.84        29.98         4.64         6.84         5.33 
TCGA-13-1477 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1501 
       54.61        61.71        98.04        20.68        70.82        32.84 
TCGA-13-1504 TCGA-13-1506 TCGA-13-1510 TCGA-13-2059 TCGA-13-2071 TCGA-20-0996 
       16.57         4.41         2.56        12.23         6.28        72.20 
TCGA-20-1684 TCGA-23-1021 TCGA-23-1024 TCGA-23-1026 TCGA-23-1031 TCGA-23-1110 
       19.07        47.54        15.39        26.83        18.87        54.51 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 
        4.57        33.30        58.13         0.53       115.89        91.66 
TCGA-23-2084 TCGA-24-0968 TCGA-24-0975 TCGA-24-0980 TCGA-24-1103 TCGA-24-1423 
       49.84        19.63        21.80         7.66        54.08         6.25 
TCGA-24-1424 TCGA-24-1427 TCGA-24-1436 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 
        6.02         4.80         8.55        12.46       105.99         9.11 
TCGA-24-1470 TCGA-24-1544 TCGA-24-1546 TCGA-24-1549 TCGA-24-1553 TCGA-24-1555 
        3.42        26.96        64.27        56.58        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1564 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       70.62        39.88        25.87        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1845 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1928 
        8.32         3.81         5.75         5.49         9.80        11.05 
TCGA-24-2027 TCGA-24-2033 TCGA-24-2038 TCGA-24-2254 TCGA-24-2281 TCGA-24-2289 
      109.68        18.48        44.48        57.07        44.58        67.36 
TCGA-24-2290 TCGA-25-1317 TCGA-25-1321 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       36.23         1.02        33.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 
        0.36        20.58         7.86         0.30        60.59        35.54 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 
       18.05        85.05         1.02        30.97        78.87        44.71 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       38.53         0.79        18.25        41.95        29.23        34.62 
TCGA-29-1763 TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 
       66.77        24.36        17.29        12.36        11.84        14.93 
TCGA-29-1784 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2434 TCGA-29-2436 
        5.36        65.00        62.47         4.87        11.47         9.76 
TCGA-30-1718 TCGA-30-1859 TCGA-30-1862 TCGA-30-1880 TCGA-30-1891 TCGA-31-1946 
       51.91        48.07         6.08        57.57        30.05        30.18 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1574 TCGA-36-1581 TCGA-36-2530 
       42.51        44.09         2.17        22.55        24.69        33.01 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       25.91        25.08        23.80        20.98        18.31        20.52 
TCGA-36-2549 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2591 TCGA-57-1583 
        6.05        14.30         9.07         9.44         7.63        11.38 
TCGA-57-1585 TCGA-57-1586 TCGA-59-2348 TCGA-59-2349 TCGA-59-2351 TCGA-59-2354 
        1.74        22.32       180.16        80.12       116.12        34.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1728 TCGA-61-1734 
       44.78        11.11         8.05        20.94        27.88        28.47 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1901 TCGA-61-1903 TCGA-61-1911 
       35.80         2.43        43.69        11.41        13.02        42.48 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-2000 TCGA-61-2002 TCGA-61-2009 
       67.73        43.43        15.75        14.50        17.98        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2092 TCGA-61-2094 
       30.64         1.18        45.96        45.40        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2101 TCGA-61-2110 TCGA-61-2111 TCGA-61-2610 
       61.64        58.39        55.50        44.52       125.72        51.91 
TCGA-61-2614 
        8.58 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.26               0.30 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            151.99             180.16 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             28.18              28.47 
[1] "0.3 - 152.0 (28.2)" "0.3 - 180.2 (28.5)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
D69V3, multiclass
                    clus
vv                   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           343                207
  PERITONEUM (OVARY)                2                  0
D69V4, continuous
D69V5, multiclass
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  I                  8                  8
  II                13                 13
  III              269                156
  IV                52                 30
D69V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      2  344
  16Q LOSS WILD-TYPE    1  207
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 2                  1
  YES              344                207
D69V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED    275   71
  16Q LOSS WILD-TYPE  175   33
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO               275                175
  YES               71                 33

Clustering(70) Variable = 17p loss mutation analysis
D70V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED   192 219
  17P LOSS WILD-TYPE  71  66
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               411                137 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               219                 66 
$`17P LOSS MUTATED`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1348 
       40.24         1.81        49.15        46.62        11.87        48.76 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       21.57        63.98        65.46        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1542 
       76.54        71.47        82.36        56.55        19.99        84.20 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       55.40        48.89        27.88        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       31.86        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 
       17.95        35.54         9.96        89.33        74.89        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 
       97.55         6.12        35.15       112.37        71.11        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0933 
       20.91        26.93        25.91        81.47        33.24        11.70 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       15.12        19.86         6.21        24.59        44.55        39.58 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 
       12.39        31.07        15.19        17.79         2.47        11.18 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0766 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       11.38        34.06        21.40        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 
       30.35        19.56         8.71         7.79         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 
       43.82        35.28        35.28        13.61       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       74.27        66.64        61.81        67.99        69.01        43.36 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 
       57.07        19.36        47.38        48.33        47.84        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 
       37.08        27.68        34.06        21.14        14.89         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1409 TCGA-13-1481 TCGA-13-1482 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
        6.84        87.06        61.71        22.39        70.82        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       52.44        73.55        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       37.61        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        4.14         2.56         3.88        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 
       23.05        25.94        26.20        27.48        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
        2.93         2.66        47.54        40.54        15.39        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1117 TCGA-23-1118 
       51.35        54.51         3.22        31.20        33.30        86.01 
TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
        4.27        39.09        33.47        58.13        24.95       115.89 
TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       87.48        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.82         7.99         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        5.36         4.80        28.34        19.17        18.67        43.53 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 
       72.92        12.46        45.14       105.99         3.42         1.18 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       51.91        41.39        88.50        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       45.50        47.70        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
       38.24         8.32         3.48         4.37        11.28         5.75 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
        9.80        22.65        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2036 TCGA-24-2261 TCGA-24-2267 TCGA-24-2271 
       53.95        18.48        64.01         0.79        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 
       70.45        44.58         0.82        36.23        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
       53.26         1.02        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1625 
       34.98        36.95         2.99        12.00         2.96        18.02 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
        7.86         0.30        56.94        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 
       14.93        24.99        13.02        49.05        38.04         3.02 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 TCGA-29-1688 
       45.01        19.99         2.96        29.00        26.96        78.87 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 
        0.53        16.90        59.67        18.25        41.95        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       17.00        85.68        62.93        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       22.52        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-29-2431 TCGA-29-2432 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       45.11        42.25        11.84        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1574 TCGA-36-1575 
       42.51        44.09         2.17        28.73        22.55         8.55 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2549 TCGA-42-2582 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
        6.05        14.30         7.56         7.46         7.63        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1993 TCGA-59-2348 TCGA-59-2350 
       11.38        21.14         1.74        25.05       180.16        22.32 
TCGA-59-2351 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1724 
      116.12        34.39         2.14         5.39        44.78        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       31.40        18.54        27.88        31.76        28.47        48.79 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 
       35.80         2.43        43.69         1.41         8.42        11.41 
TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1915 
       13.02        34.13        31.30        37.02        48.92        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2087 
       17.98         3.98        30.61        30.64         1.18         4.80 
TCGA-61-2088 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
        4.77        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2610 TCGA-61-2613 TCGA-61-2614 
       51.91        31.07         8.58 

$`17P LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1356 
       41.00         2.01        18.51        65.49        63.06        49.28 
TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-09-1661 TCGA-09-1665 
       41.59        38.37       119.08        29.06        38.43        41.59 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2048 TCGA-09-2051 TCGA-09-2056 TCGA-10-0925 
        8.55         6.15         4.50        63.09        12.46        54.31 
TCGA-10-0928 TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-13-0724 
       18.48        32.28         3.88        35.41        35.80         2.73 
TCGA-13-0751 TCGA-13-0760 TCGA-13-0762 TCGA-13-0764 TCGA-13-0768 TCGA-13-0800 
       55.17        11.54        32.25        31.04         8.42         8.12 
TCGA-13-0883 TCGA-13-0888 TCGA-13-0897 TCGA-13-0899 TCGA-13-0906 TCGA-13-0913 
       68.91        70.39        57.47        56.15        44.94        29.98 
TCGA-13-0920 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
       13.81         5.92         4.70         4.21         5.33        54.61 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1499 TCGA-13-1507 TCGA-13-1512 
       29.39        98.04        20.68        38.37         4.77         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-20-0996 TCGA-20-1683 TCGA-23-1022 
       14.24        12.23         8.58        72.20        25.38        42.51 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1119 TCGA-23-1121 TCGA-23-1809 TCGA-23-2079 
       68.68         4.57       129.96         6.38         0.53        91.66 
TCGA-24-1419 TCGA-24-1428 TCGA-24-1436 TCGA-24-1469 TCGA-24-1474 TCGA-24-1553 
        7.86        17.36         8.55         9.11        22.19        58.09 
TCGA-24-1556 TCGA-24-1564 TCGA-24-1565 TCGA-24-1844 TCGA-24-1845 TCGA-24-1850 
       70.62        25.87        10.26         3.72         3.81         5.49 
TCGA-24-1924 TCGA-24-2035 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 
       30.21        28.18        44.48        57.07        36.16         0.36 
TCGA-24-2289 TCGA-24-2293 TCGA-25-1313 TCGA-25-1319 TCGA-25-1321 TCGA-25-1623 
       67.36        16.64        26.93        65.00        33.96        18.58 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 
       15.78         0.36        20.58        18.05        85.05         1.02 
TCGA-25-2397 TCGA-25-2400 TCGA-25-2408 TCGA-29-1690 TCGA-29-1698 TCGA-29-1702 
       12.00        42.02        30.97        44.71        68.28        18.64 
TCGA-29-1710 TCGA-29-1763 TCGA-29-1766 TCGA-29-1774 TCGA-29-2429 TCGA-29-2434 
       29.23        66.77        39.09        17.29         4.87        11.47 
TCGA-29-2436 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1576 TCGA-36-1577 
        9.76        29.06        21.53        22.85        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2540 TCGA-36-2551 TCGA-36-2552 
       27.85        24.23        24.69        23.80        16.14        11.47 
TCGA-42-2587 TCGA-42-2588 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 TCGA-59-2349 
        9.07         9.44        22.32        28.96        25.02        80.12 
TCGA-59-2352 TCGA-61-1721 TCGA-61-1722 TCGA-61-1730 TCGA-61-1737 TCGA-61-1741 
        9.40        11.11         8.05         4.34        44.84        33.67 
TCGA-61-1900 TCGA-61-1904 TCGA-61-1911 TCGA-61-1914 TCGA-61-2009 TCGA-61-2017 
        5.79         9.07        42.48        56.58        39.85        45.96 
TCGA-61-2018 TCGA-61-2092 TCGA-61-2113 TCGA-61-2611 TCGA-61-2612 
       45.40        51.72        22.22        15.88         6.35 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.26               0.36 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            180.16             129.96 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             29.10              25.02 
[1] "0.3 - 180.2 (29.1)" "0.4 - 130.0 (25.0)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" 
[1] "hr=" "1"  
D70V2, continuous
D70V3, multiclass
                    clus
vv                   17P LOSS MUTATED 17P LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           414                136
  PERITONEUM (OVARY)                1                  1
D70V4, continuous
D70V5, multiclass
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  I                  9                  7
  II                17                  9
  III              327                 98
  IV                61                 21
D70V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      2  414
  17P LOSS WILD-TYPE    1  137
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                 2                  1
  YES              414                137
D70V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED    339   77
  17P LOSS WILD-TYPE  111   27
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO               339                111
  YES               77                 27

Clustering(71) Variable = 17q loss mutation analysis
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED   156 161
  17Q LOSS WILD-TYPE 107 124
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               317                231 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               161                124 
$`17Q LOSS MUTATED`
TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       49.15        46.62        11.87        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       65.46        32.52        33.67        76.54        71.47        82.36 
TCGA-04-1517 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       19.99        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 
        9.47        57.73        17.95        74.89        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 
       55.36        30.48        17.98         5.85         3.02        97.55 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 
        6.12        35.15       112.37        71.11        39.75        20.91 
TCGA-09-2055 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0938 
       26.93        25.91        81.47        18.48        33.24        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0758 TCGA-13-0762 
        6.21        24.59        44.55        39.58        11.38        32.25 
TCGA-13-0766 TCGA-13-0791 TCGA-13-0793 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       21.40        38.93        28.70        19.56         8.71         7.79 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0884 TCGA-13-0886 
        8.28        43.82        35.28        35.28       107.18        74.27 
TCGA-13-0887 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0901 TCGA-13-0903 
       66.64        67.99        69.01        43.36        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0916 
       48.33        47.84        44.84        37.08        27.68        21.14 
TCGA-13-0919 TCGA-13-0921 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
       14.89         4.64         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1409 TCGA-13-1481 TCGA-13-1482 TCGA-13-1491 TCGA-13-1492 
        6.05         6.84        87.06        61.71        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       38.17        49.22        54.31        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2059 
        4.21         4.41         4.14         2.56         3.88        12.23 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 TCGA-23-1024 
       27.48        19.07        16.67         2.93        47.54        15.39 
TCGA-23-1026 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1111 
       26.83         8.81        29.10        18.87         2.24         3.22 
TCGA-23-1113 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 
       31.20         4.27        39.09        33.47        58.13        24.95 
TCGA-23-2077 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
      115.89        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0968 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       19.63        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1422 TCGA-24-1423 
       47.41         6.31         6.38         7.99         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        6.02         5.95         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1463 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 
       18.67        72.92        45.14       105.99         3.42         1.18 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 TCGA-24-1555 
       26.96        57.37        16.21        41.06        51.91        88.50 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1603 TCGA-24-1604 
       39.88        19.53        44.09        45.50        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 
       48.33        38.24         8.32        11.28         5.75         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2026 
       22.65        30.21        81.11         4.87        44.84        34.82 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2036 TCGA-24-2254 TCGA-24-2267 
       14.43        53.95        18.48        64.01        57.07        47.54 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 
       70.45        44.58         0.82        36.23        33.11        55.86 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
        1.02        26.93        51.06        37.02         1.02        34.98 
TCGA-25-1320 TCGA-25-1322 TCGA-25-1625 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       36.95         2.99        18.02         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2391 
       60.59        35.54        51.22        14.93        24.99        49.05 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2404 
       38.04         3.02        12.00        45.01        19.99        29.00 
TCGA-29-1688 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        47.18       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1761 
       31.17        16.90        59.67        18.25        41.95        17.00 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1775 
       85.68        62.93        22.98        24.36        22.52        12.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       11.84        12.30        14.93         8.35         7.20         5.36 
TCGA-29-2427 TCGA-29-2431 TCGA-29-2432 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       62.47        42.25        11.84        38.07        51.91        36.26 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 
       15.68         0.26        48.07        44.91        34.78        36.62 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-31-1950 TCGA-31-1953 TCGA-31-1955 
       57.57        24.26        30.05        18.77         6.71        42.51 
TCGA-31-1956 TCGA-36-1568 TCGA-36-1575 TCGA-36-1577 TCGA-36-2529 TCGA-36-2530 
       44.09        28.73         8.55        25.74        35.05        33.01 
TCGA-36-2532 TCGA-36-2537 TCGA-36-2538 TCGA-36-2542 TCGA-36-2545 TCGA-36-2548 
       29.49        25.91        25.08        21.60        18.31        14.17 
TCGA-36-2549 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        6.05         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1993 TCGA-59-2348 TCGA-59-2351 TCGA-59-2355 TCGA-59-2372 
       21.14        25.05       180.16       116.12         2.14        44.78 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 
       20.94        31.40        18.54        27.88        31.76        28.47 
TCGA-61-1740 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 
        2.43        43.69         1.41         8.42        11.41        13.02 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       34.13        31.30        37.02        67.73        43.43        15.75 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2003 TCGA-61-2012 TCGA-61-2016 TCGA-61-2018 
        1.97         5.52         3.98        30.64         1.18        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2094 TCGA-61-2097 TCGA-61-2101 TCGA-61-2104 
        4.80         4.77        71.74        60.62        55.50        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2610 TCGA-61-2613 
       20.68        44.52       125.72        51.91        31.07 

$`17Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 
       40.24        41.00         1.81         2.01        18.51        65.49 
TCGA-04-1347 TCGA-04-1356 TCGA-04-1362 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 
       63.06        49.28        44.32        56.55        41.59        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
      119.08        29.06        35.54         9.96        38.43        89.33 
TCGA-09-1665 TCGA-09-1674 TCGA-09-2043 TCGA-09-2048 TCGA-09-2051 TCGA-09-2056 
       41.59         8.55         6.15         4.50        63.09        12.46 
TCGA-10-0925 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       54.31        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       15.12         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 
       55.17         2.47        11.18        11.54        34.06        31.04 
TCGA-13-0768 TCGA-13-0792 TCGA-13-0794 TCGA-13-0800 TCGA-13-0802 TCGA-13-0807 
        8.42        36.72        30.35         8.12         8.19        13.61 
TCGA-13-0883 TCGA-13-0885 TCGA-13-0888 TCGA-13-0889 TCGA-13-0897 TCGA-13-0899 
       68.91        91.40        70.39        61.81        57.47        56.15 
TCGA-13-0900 TCGA-13-0906 TCGA-13-0912 TCGA-13-0913 TCGA-13-0920 TCGA-13-0923 
       57.07        44.94        34.06        29.98        13.81         6.41 
TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1483 
        5.92         4.70         4.21         5.33        54.61        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1496 
       98.04        20.68        22.39        70.82        82.88         4.24 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1507 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 
       37.61        38.37         4.77         3.09        14.24         8.58 
TCGA-20-0996 TCGA-20-1683 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1027 
       72.20        25.38         2.66        42.51        40.54        31.73 
TCGA-23-1028 TCGA-23-1109 TCGA-23-1110 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       49.41        51.35        54.51        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 
       86.01       129.96         6.38         0.53        87.48        91.66 
TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 TCGA-24-1417 TCGA-24-1419 TCGA-24-1426 
        7.63        11.64        21.80         7.82         7.86         5.36 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1469 TCGA-24-1474 TCGA-24-1546 
       43.53         8.55        12.46         9.11        22.19        64.27 
TCGA-24-1549 TCGA-24-1552 TCGA-24-1553 TCGA-24-1556 TCGA-24-1563 TCGA-24-1564 
       56.58        41.39        58.09        70.62        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       10.26        17.23         3.48         3.72         3.81         4.37 
TCGA-24-1850 TCGA-24-1927 TCGA-24-1928 TCGA-24-2020 TCGA-24-2024 TCGA-24-2027 
        5.49        16.41        11.05       151.99        58.16       109.68 
TCGA-24-2035 TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 
       28.18        44.48        36.16         0.79         0.36        31.63 
TCGA-24-2289 TCGA-24-2293 TCGA-24-2298 TCGA-25-1314 TCGA-25-1319 TCGA-25-1321 
       67.36        16.64        53.26        31.99        65.00        33.96 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
       12.00         2.96        18.58        15.78         0.36        20.58 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2392 TCGA-25-2400 TCGA-25-2401 
       18.05        85.05        13.02         1.02        42.02         2.96 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1698 TCGA-29-1699 TCGA-29-1702 
       30.97        26.96        44.71        68.28         0.53        18.64 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 TCGA-29-1774 
       29.23        34.62        66.77        39.09        31.23        17.29 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2434 
       34.62        86.17        65.00        45.11         4.87        11.47 
TCGA-29-2436 TCGA-30-1855 TCGA-30-1862 TCGA-30-1867 TCGA-30-1892 TCGA-31-1944 
        9.76         2.47         6.08         1.18        48.79        45.57 
TCGA-31-1946 TCGA-31-1951 TCGA-31-1959 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       30.18        22.45         2.17        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2534 
       22.55        30.05        27.85        24.23        24.69        29.79 
TCGA-36-2540 TCGA-36-2543 TCGA-36-2544 TCGA-36-2547 TCGA-36-2551 TCGA-36-2552 
       23.80         2.24        20.98        20.52        16.14        11.47 
TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       14.30         9.07         9.44         1.74        22.32        28.96 
TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 
       25.02        80.12        22.32         9.40        34.39         5.39 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1730 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       11.11         8.05         4.34        48.79        44.84        35.80 
TCGA-61-1741 TCGA-61-1900 TCGA-61-1904 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       33.67         5.79         9.07        42.48        48.92        56.58 
TCGA-61-1919 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2017 
       38.17        14.50        17.98        30.61        39.85        45.96 
TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2102 TCGA-61-2113 
       51.72        61.64        58.39        65.49         6.48        22.22 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2614 
       15.88         6.35         8.58 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.26               0.36 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            180.16             151.99 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             28.70              25.87 
[1] "0.3 - 180.2 (28.7)" "0.4 - 152.0 (25.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D71V2, continuous
D71V3, multiclass
                    clus
vv                   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           318                232
  PERITONEUM (OVARY)                1                  1
D71V4, continuous
D71V5, multiclass
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  I                  7                  9
  II                16                 10
  III              249                176
  IV                47                 35
D71V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      3  317
  17Q LOSS WILD-TYPE    0  234
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 3                  0
  YES              317                234
D71V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED    269   51
  17Q LOSS WILD-TYPE  181   53
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO               269                181
  YES               51                 53

Clustering(72) Variable = 18p loss mutation analysis
D72V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    83  93
  18P LOSS WILD-TYPE 180 192
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               176                372 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                93                192 
$`18P LOSS MUTATED`
TCGA-04-1338 TCGA-04-1351 TCGA-04-1362 TCGA-04-1364 TCGA-04-1514 TCGA-04-1517 
       46.62        65.46        44.32        33.67        56.55        19.99 
TCGA-04-1649 TCGA-04-1651 TCGA-09-1666 TCGA-09-1667 TCGA-09-1672 TCGA-09-1673 
       64.64        36.23        57.57        61.87         5.85         3.02 
TCGA-09-2044 TCGA-09-2053 TCGA-10-0926 TCGA-10-0931 TCGA-13-0714 TCGA-13-0720 
        6.12        39.75        25.91        32.28         6.21        44.55 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       31.07        15.19        55.17         2.47        11.18        11.38 
TCGA-13-0766 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0800 TCGA-13-0803 
       21.40        36.72        28.70        30.35         8.12        43.82 
TCGA-13-0804 TCGA-13-0807 TCGA-13-0883 TCGA-13-0891 TCGA-13-0903 TCGA-13-0910 
       35.28        13.61        68.91        69.01        47.38        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0924 TCGA-13-1403 TCGA-13-1405 TCGA-13-1409 
       27.68        34.06         6.08        10.88         7.36         6.84 
TCGA-13-1487 TCGA-13-1495 TCGA-13-1498 TCGA-13-1506 TCGA-13-2061 TCGA-13-2065 
       22.39        49.22        37.61         4.41        10.78         8.75 
TCGA-13-2071 TCGA-20-0990 TCGA-20-1683 TCGA-20-1684 TCGA-20-1687 TCGA-23-1021 
        6.28        25.94        25.38        19.07         2.66        47.54 
TCGA-23-1027 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       31.73         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1122 TCGA-23-2072 TCGA-23-2079 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       39.09        24.95        91.66        49.84         2.76         4.70 
TCGA-24-0966 TCGA-24-0970 TCGA-24-0982 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 
        7.63        11.64        22.32        63.55         6.31         6.38 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1431 TCGA-24-1463 TCGA-24-1470 TCGA-24-1471 
        6.25         5.95        19.17        72.92         3.42         1.18 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1551 TCGA-24-1557 
       26.96        57.37        64.27        16.21        51.91        39.88 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1603 TCGA-24-1614 TCGA-24-1843 
       44.09        45.50        47.70        90.15        48.33         3.48 
TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-2023 
        5.75         9.80        22.65        16.41        11.05        44.84 
TCGA-24-2027 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2293 TCGA-24-2298 
      109.68        47.54        31.63        70.45        16.64        53.26 
TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1322 
       26.93        51.06        37.02         1.02        36.95         2.99 
TCGA-25-1630 TCGA-25-1632 TCGA-25-1634 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
        7.86        56.94        35.54        18.05        85.05        13.02 
TCGA-25-2393 TCGA-25-2404 TCGA-25-2409 TCGA-29-1694 TCGA-29-1697 TCGA-29-1701 
       38.04        29.00        26.96        38.53        31.17        16.90 
TCGA-29-1703 TCGA-29-1707 TCGA-29-1762 TCGA-29-1763 TCGA-29-1768 TCGA-29-1770 
       59.67        41.95        85.68        66.77        31.23        24.36 
TCGA-29-1775 TCGA-29-1777 TCGA-29-1783 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 
       12.36        12.30         7.20        86.17        62.47        45.11 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1856 TCGA-30-1860 TCGA-30-1861 TCGA-30-1880 
       11.47        38.07        15.68        44.91        34.78        57.57 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 TCGA-36-1568 TCGA-36-1569 TCGA-36-1575 
       30.05        48.79        30.18        28.73        29.06         8.55 
TCGA-36-1577 TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2542 
       25.74        24.23        33.01        29.49        29.79        21.60 
TCGA-36-2543 TCGA-36-2548 TCGA-36-2552 TCGA-42-2587 TCGA-42-2591 TCGA-57-1582 
        2.24        14.17        11.47         9.07         7.63        24.03 
TCGA-57-1993 TCGA-59-2350 TCGA-59-2351 TCGA-59-2354 TCGA-59-2363 TCGA-61-1724 
       25.05        22.32       116.12        34.39         5.39        20.94 
TCGA-61-1727 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1995 TCGA-61-2002 
       18.54        33.67        43.69         1.41         1.97        17.98 
TCGA-61-2009 TCGA-61-2094 TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       39.85        71.74        65.49         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2610 
       44.52        51.91 

$`18P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 
       40.24        41.00         1.81        49.15         2.01        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 
       49.28        32.52        76.54        71.47        82.36        41.59 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       38.37       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       27.88        28.64        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       89.33        74.89        41.59        55.36        30.48        17.98 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
        8.55        97.55         6.15        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       71.11        63.09        20.91        26.93        12.46        54.31 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       81.47        18.48        33.24        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 
       35.80        15.12        19.86        24.59        39.58         2.73 
TCGA-13-0725 TCGA-13-0730 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       12.39        17.79        11.54        34.06        32.25        31.04 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
        8.42        38.93        19.56         8.71         7.79         8.28 
TCGA-13-0802 TCGA-13-0805 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
        8.19        35.28       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 
       70.39        61.81        67.99        43.36        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       57.07        19.36        48.33        47.84        44.94        44.84 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       29.98        21.14        14.89        13.81         4.64         6.41 
TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        6.61         6.05         5.92         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 
       70.82        82.88        52.44        73.55        38.17         4.24 
TCGA-13-1497 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       54.31        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
       12.23         8.58        23.05        26.20        72.20        27.48 
TCGA-20-1685 TCGA-20-1686 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
       16.67         2.93        42.51        40.54        15.39        26.83 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1114 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 
       54.51        68.68       129.96         4.27         6.38        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2645 
       58.13         0.53       115.89        87.48        77.00         4.50 
TCGA-24-0968 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1105 
       19.63        21.80        41.56         7.66        54.08        47.41 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1424 TCGA-24-1426 
        7.82         7.99         7.86         0.76         6.02         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
        4.80        17.36        28.34        18.67        43.53         8.55 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 TCGA-24-1549 
       12.46        45.14       105.99         9.11        22.19        56.58 
TCGA-24-1550 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 
       41.06        41.39        58.09        88.50        70.62        19.53 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 
       25.87        10.26        17.23        88.34        38.24         8.32 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1850 TCGA-24-1924 
        3.72         3.81         4.37        11.28         5.49        30.21 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 
       81.11         4.87       151.99        58.16        34.82        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       36.16         0.79         0.36        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1314 TCGA-25-1318 
       36.23        33.11        55.86         1.02        31.99        34.98 
TCGA-25-1319 TCGA-25-1321 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       65.00        33.96        12.00         2.96        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1633 TCGA-25-1635 
       15.78         0.36        20.58         0.30        60.59        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-2391 TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 
       14.93        24.99        49.05         1.02         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 TCGA-29-1688 
       45.01        19.99        42.02         2.96        30.97        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 TCGA-29-1696 TCGA-29-1698 
       44.71        47.18       101.75         0.79        33.70        68.28 
TCGA-29-1699 TCGA-29-1702 TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
        0.53        18.64        18.25        29.23        34.62        17.00 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 
       62.93        39.09        22.98        22.52        17.29        11.84 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2429 
       14.93         8.35         5.36        34.62        65.00         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       42.25        11.84         9.76        51.91        36.26         2.47 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 
        0.26        48.07         6.08        36.62         1.18        24.26 
TCGA-31-1944 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       45.57        18.77        22.45         6.71        42.51        44.09 
TCGA-31-1959 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 
        2.17        21.53        22.85        22.55        30.05        27.85 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2544 
       24.69        35.05        25.91        25.08        23.80        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2588 
       18.31        20.52         6.05        16.14        14.30         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.56         7.46        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2352 TCGA-59-2355 
       28.96        25.02       180.16        80.12         9.40         2.14 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 
       44.78        11.11         8.05        31.40        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       31.30        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 
       43.43        15.75        38.17         5.52        14.50         3.98 
TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       30.61        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2101 
        4.77        51.72        61.64        58.39        60.62        55.50 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22        15.88         6.35        31.07         8.58 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              1.02               0.26 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            116.12             180.16 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            29.030             27.865 
[1] "1.0 - 116.1 (29.0)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D72V2, continuous
D72V3, multiclass
                    clus
vv                   18P LOSS MUTATED 18P LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           178                372
  PERITONEUM (OVARY)                0                  2
D72V4, continuous
D72V5, multiclass
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  I                  1                 15
  II                10                 16
  III              137                288
  IV                28                 54
D72V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      2  177
  18P LOSS WILD-TYPE    1  374
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 2                  1
  YES              177                374
D72V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED    155   24
  18P LOSS WILD-TYPE  295   80
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO               155                295
  YES               24                 80

Clustering(73) Variable = 18q loss mutation analysis
D73V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED   108 114
  18Q LOSS WILD-TYPE 155 171
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               222                326 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               114                171 
$`18Q LOSS MUTATED`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1347 TCGA-04-1351 TCGA-04-1356 
        1.81        49.15        46.62        63.06        65.46        49.28 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1517 TCGA-04-1649 TCGA-04-1651 TCGA-09-1667 
       44.32        33.67        19.99        64.64        36.23        61.87 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2048 
        5.85         3.02        97.55         6.15         6.12         4.50 
TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2056 TCGA-10-0926 TCGA-10-0931 
       71.11        39.75        20.91        12.46        25.91        32.28 
TCGA-13-0714 TCGA-13-0720 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
        6.21        44.55        31.07        15.19        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0766 TCGA-13-0792 TCGA-13-0793 
        2.47        11.18        11.38        21.40        36.72        28.70 
TCGA-13-0794 TCGA-13-0800 TCGA-13-0803 TCGA-13-0804 TCGA-13-0807 TCGA-13-0883 
       30.35         8.12        43.82        35.28        13.61        68.91 
TCGA-13-0886 TCGA-13-0899 TCGA-13-0903 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       74.27        56.15        47.38        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0924 TCGA-13-1403 TCGA-13-1405 
       27.68        34.06        29.98         6.08        10.88         7.36 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1483 TCGA-13-1487 TCGA-13-1495 TCGA-13-1498 
        5.92         6.84        29.39        22.39        49.22        37.61 
TCGA-13-1500 TCGA-13-1505 TCGA-13-1506 TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 
       13.97         4.21         4.41        14.24        12.23        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
        8.75         6.28        25.94        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1027 
       16.67         2.93         2.66        47.54        40.54        31.73 
TCGA-23-1028 TCGA-23-1032 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 
       49.41         2.24         3.22        31.20         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1122 TCGA-23-1124 TCGA-23-2072 TCGA-23-2079 
       86.01       129.96        39.09        58.13        24.95        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-24-0966 TCGA-24-0970 
       77.00        49.84         2.76         4.70         7.63        11.64 
TCGA-24-0982 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 
       22.32        63.55        47.41         6.31         6.38         7.99 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1428 TCGA-24-1463 TCGA-24-1470 
        6.25         6.02         5.95        17.36        72.92         3.42 
TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1552 
        1.18        26.96        57.37        64.27        16.21        41.39 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1603 
       39.88        19.53        44.09        45.50        47.70        90.15 
TCGA-24-1614 TCGA-24-1843 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
       48.33         3.48         5.75         9.80        22.65        16.41 
TCGA-24-1928 TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 TCGA-24-2029 TCGA-24-2035 
       11.05       151.99        44.84       109.68        14.43        28.18 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2288 TCGA-24-2289 TCGA-24-2293 TCGA-24-2298 
       47.54        31.63         0.82        67.36        16.64        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1321 
        1.02        26.93        51.06        37.02         1.02        33.96 
TCGA-25-1322 TCGA-25-1625 TCGA-25-1632 TCGA-25-1634 TCGA-25-1877 TCGA-25-1878 
        2.99        18.02        56.94        35.54        18.05        85.05 
TCGA-25-2042 TCGA-25-2393 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 TCGA-29-1694 
       13.02        38.04         2.96        29.00        26.96        38.53 
TCGA-29-1697 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 TCGA-29-1762 
       31.17        16.90        18.64        59.67        41.95        85.68 
TCGA-29-1763 TCGA-29-1768 TCGA-29-1770 TCGA-29-1775 TCGA-29-1777 TCGA-29-1781 
       66.77        31.23        24.36        12.36        12.30         8.35 
TCGA-29-1783 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2434 TCGA-30-1714 
        7.20        86.17        62.47        45.11        11.47        38.07 
TCGA-30-1856 TCGA-30-1861 TCGA-30-1880 TCGA-30-1891 TCGA-31-1944 TCGA-31-1946 
       15.68        34.78        57.57        30.05        45.57        30.18 
TCGA-31-1959 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 
        2.17        29.06        21.53        22.85         8.55        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 TCGA-36-2542 
       27.85        24.23        29.49        29.79        25.08        21.60 
TCGA-36-2543 TCGA-36-2548 TCGA-36-2552 TCGA-42-2587 TCGA-42-2591 TCGA-57-1582 
        2.24        14.17        11.47         9.07         7.63        24.03 
TCGA-57-1583 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-59-2350 TCGA-59-2351 
       11.38         1.74        28.96        25.05        22.32       116.12 
TCGA-59-2354 TCGA-59-2363 TCGA-61-1724 TCGA-61-1737 TCGA-61-1741 TCGA-61-1743 
       34.39         5.39        20.94        44.84        33.67        43.69 
TCGA-61-1895 TCGA-61-1906 TCGA-61-1995 TCGA-61-2002 TCGA-61-2094 TCGA-61-2097 
        1.41        34.13         1.97        17.98        71.74        60.62 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2610 TCGA-61-2612 
        6.48        76.83        20.68        44.52        51.91         6.35 

$`18Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 
       40.24        41.00         2.01        18.51        11.87        65.49 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1365 TCGA-04-1367 
       48.76        21.57        63.98        32.52        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       82.36        56.55        41.59        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1652 
       84.20        55.40        48.89        27.88        28.64        31.86 
TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 
       47.70        45.34        29.16         9.47        57.73        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       35.54         9.96        38.43        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-2045 
       57.57        55.36        30.48        17.98         8.55        35.15 
TCGA-09-2049 TCGA-09-2051 TCGA-09-2055 TCGA-10-0925 TCGA-10-0927 TCGA-10-0928 
      112.37        63.09        26.93        54.31        81.47        18.48 
TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       33.24        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0760 
       19.86        24.59        39.58         2.73        12.39        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 TCGA-13-0795 
       34.06        32.25        31.04         8.42        38.93        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0805 TCGA-13-0884 
        8.71         7.79         8.28         8.19        35.28       107.18 
TCGA-13-0885 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       91.40        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0904 TCGA-13-0905 
       43.36        57.47        57.07        19.36        48.33        47.84 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-1404 
       21.14        14.89        13.81         4.64         6.41         6.61 
TCGA-13-1407 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.05         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       61.71        98.04        20.68        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 TCGA-13-1497 TCGA-13-1499 TCGA-13-1501 
       73.55        38.17         4.24        54.31        38.37        32.84 
TCGA-13-1504 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
       16.57         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2060 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-23-1022 TCGA-23-1024 
        8.58        23.05        26.20        72.20        42.51        15.39 
TCGA-23-1026 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 
       26.83         8.81        29.10        18.87        51.35        54.51 
TCGA-23-1114 TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 TCGA-23-1809 TCGA-23-2077 
       68.68         4.27         6.38        33.47         0.53       115.89 
TCGA-23-2078 TCGA-23-2645 TCGA-24-0968 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
       87.48         4.50        19.63        21.80        41.56         7.66 
TCGA-24-1103 TCGA-24-1417 TCGA-24-1419 TCGA-24-1422 TCGA-24-1426 TCGA-24-1427 
       54.08         7.82         7.86         0.76         5.36         4.80 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 
       28.34        19.17        18.67        43.53         8.55        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 TCGA-24-1549 TCGA-24-1550 
       45.14       105.99         9.11        22.19        56.58        41.06 
TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1564 TCGA-24-1565 
       51.91        58.09        88.50        70.62        25.87        10.26 
TCGA-24-1567 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 
       17.23        88.34        38.24         8.32         3.72         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1850 TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 
        4.37        11.28         5.49        30.21        81.11         4.87 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2030 TCGA-24-2033 TCGA-24-2036 TCGA-24-2038 
       58.16        34.82        53.95        18.48        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2280 TCGA-24-2281 
       57.07        36.16         0.79         0.36        70.45        44.58 
TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 TCGA-25-1314 TCGA-25-1318 TCGA-25-1319 
       36.23        33.11        55.86        31.99        34.98        65.00 
TCGA-25-1320 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 
       36.95        12.00         2.96        18.58        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 
       20.58         7.86         0.30        60.59        51.22        14.93 
TCGA-25-1871 TCGA-25-2391 TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       24.99        49.05         1.02         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       19.99        42.02        30.97        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1695 TCGA-29-1696 TCGA-29-1698 TCGA-29-1699 TCGA-29-1705 
      101.75         0.79        33.70        68.28         0.53        18.25 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 
       29.23        34.62        17.00        62.93        39.09        22.98 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1778 TCGA-29-1784 TCGA-29-1785 
       22.52        17.29        11.84        14.93         5.36        34.62 
TCGA-29-2425 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 
       65.00         4.87        42.25        11.84         9.76        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 
       36.26         2.47         0.26        48.07        44.91         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1950 TCGA-31-1951 
       36.62         1.18        24.26        48.79        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1574 TCGA-36-1576 
        6.71        42.51        44.09        28.73        22.55        30.05 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2537 TCGA-36-2540 TCGA-36-2544 
       24.69        35.05        33.01        25.91        23.80        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2588 
       18.31        20.52         6.05        16.14        14.30         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-57-1584 TCGA-57-1586 TCGA-57-1994 TCGA-59-2348 
        7.56         7.46        21.14        22.32        25.02       180.16 
TCGA-59-2349 TCGA-59-2352 TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       80.12         9.40         2.14        44.78        11.11         8.05 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       31.40        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       48.79        35.80         2.43         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       13.02         9.07        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 
       56.58        67.73        43.43        15.75        38.17         5.52 
TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       14.50         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 
       45.96        45.40         4.80         4.77        51.72        61.64 
TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2111 TCGA-61-2113 TCGA-61-2611 
       58.39        65.49        55.50       125.72        22.22        15.88 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.82               0.26 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            151.99             180.16 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            26.945             29.130 
[1] "0.8 - 152.0 (26.9)" "0.3 - 180.2 (29.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D73V2, continuous
D73V3, multiclass
                    clus
vv                   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           224                326
  PERITONEUM (OVARY)                0                  2
D73V4, continuous
D73V5, multiclass
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  I                  4                 12
  II                13                 13
  III              169                256
  IV                36                 46
D73V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      2  223
  18Q LOSS WILD-TYPE    1  328
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 2                  1
  YES              223                328
D73V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED    192   33
  18Q LOSS WILD-TYPE  258   71
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO               192                258
  YES               33                 71

Clustering(74) Variable = 19p loss mutation analysis
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    65  72
  19P LOSS WILD-TYPE 198 213
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               137                411 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                72                213 
$`19P LOSS MUTATED`
TCGA-04-1343 TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1362 
       11.87        63.06        21.57        63.98        49.28        44.32 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1517 TCGA-04-1638 
       33.67        76.54        71.47        82.36        19.99        55.40 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 TCGA-09-0369 
       48.89        27.88        47.70        45.34        57.73        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1672 TCGA-09-1673 TCGA-09-2049 TCGA-09-2051 
        9.96        38.43         5.85         3.02       112.37        63.09 
TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0928 TCGA-10-0937 TCGA-13-0723 
       39.75        26.93        12.46        18.48        15.12        39.58 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0762 TCGA-13-0800 TCGA-13-0803 TCGA-13-0885 
       17.79        55.17        32.25         8.12        43.82        91.40 
TCGA-13-0886 TCGA-13-0899 TCGA-13-0908 TCGA-13-0911 TCGA-13-0919 TCGA-13-0921 
       74.27        56.15        44.84        27.68        14.89         4.64 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1411 TCGA-13-1412 
        6.08        10.88         6.61         7.36         4.21         5.33 
TCGA-13-1483 TCGA-13-1489 TCGA-13-1492 TCGA-13-1496 TCGA-13-1498 TCGA-13-1504 
       29.39        82.88        73.55         4.24        37.61        16.57 
TCGA-23-1027 TCGA-23-1030 TCGA-23-1032 TCGA-23-1119 TCGA-23-1120 TCGA-23-1124 
       31.73        29.10         2.24       129.96         4.27        58.13 
TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-1424 TCGA-24-1463 TCGA-24-1464 
        4.70         7.63        19.63         6.02        72.92        12.46 
TCGA-24-1470 TCGA-24-1544 TCGA-24-1549 TCGA-24-1560 TCGA-24-1565 TCGA-24-1846 
        3.42        26.96        56.58        44.09        10.26         4.37 
TCGA-24-2019 TCGA-24-2024 TCGA-24-2026 TCGA-24-2260 TCGA-24-2288 TCGA-24-2290 
        4.87        58.16        34.82        36.16         0.82        36.23 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1632 TCGA-25-1633 
       53.26        26.93        51.06        37.02        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2392 
       35.54        51.22        14.93        24.99        85.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2404 TCGA-25-2409 TCGA-29-1691 TCGA-29-1696 
       38.04         3.02        29.00        26.96        47.18        33.70 
TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       31.17         0.53        16.90        18.25        41.95        29.23 
TCGA-29-1761 TCGA-29-1763 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-2427 
       17.00        66.77        22.98        22.52        17.29        62.47 
TCGA-29-2428 TCGA-30-1853 TCGA-30-1861 TCGA-30-1866 TCGA-30-1891 TCGA-31-1953 
       45.11        36.26        34.78        36.62        30.05         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1575 TCGA-36-1581 
       42.51        44.09         2.17        28.73         8.55        24.69 
TCGA-36-2530 TCGA-36-2537 TCGA-36-2538 TCGA-36-2551 TCGA-57-1584 TCGA-59-2372 
       33.01        25.91        25.08        16.14        21.14        44.78 
TCGA-61-1733 TCGA-61-1740 TCGA-61-1903 TCGA-61-1907 TCGA-61-1915 TCGA-61-1917 
       31.76         2.43        13.02        31.30        67.73        43.43 
TCGA-61-2002 TCGA-61-2012 TCGA-61-2017 TCGA-61-2102 TCGA-61-2614 
       17.98        30.64        45.96         6.48         8.58 

$`19P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1346 TCGA-04-1348 TCGA-04-1351 TCGA-04-1361 TCGA-04-1514 
       18.51        65.49        48.76        65.46        32.52        56.55 
TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1648 
       41.59        38.37       119.08        29.06        84.20        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 
       64.64        36.23        31.86        29.16         9.47        17.95 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
       30.48        17.98         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2054 TCGA-10-0925 TCGA-10-0926 
       35.15         4.50        71.11        20.91        54.31        25.91 
TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       81.47        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 
       35.80        19.86         6.21        24.59        44.55         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       12.39        31.07        15.19         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.54        34.06        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.28         8.19        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
      107.18        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       43.36        57.47        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       47.84        44.94        37.08        34.06        29.98        21.14 
TCGA-13-0920 TCGA-13-0923 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
       13.81         6.41         6.05         5.92         6.84         4.70 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       54.61        87.06        61.71        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1499 
       70.82        52.44        38.17        49.22        54.31        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       13.97        32.84         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        2.56         3.88         3.09        14.24        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       72.20        27.48        25.38        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
        2.66        47.54        42.51        40.54        15.39        26.83 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       49.41         8.81        18.87        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1121 
       31.20        68.68         4.57        33.30        86.01         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       39.09        33.47         0.53        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0970 
       91.66        77.00        49.84         2.76         4.50        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        0.76         6.25         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1466 
       28.34        19.17        18.67        43.53         8.55        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 
      105.99         9.11         1.18        22.19        57.37        64.27 
TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       16.21        41.06        51.91        41.39        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       70.62        39.88        19.53        45.50        47.70        25.87 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       17.23        90.15        88.34        48.33        38.24         8.32 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.48         3.72         3.81        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
      151.99        44.84       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 
       28.18        64.01        44.48        57.07         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 TCGA-24-2293 
       47.54        31.63        70.45        44.58        67.36        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1314 TCGA-25-1317 TCGA-25-1318 
       33.11        55.86         1.02        31.99         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1877 TCGA-25-2042 TCGA-25-2391 TCGA-25-2397 TCGA-25-2398 
        0.30        18.05        13.02        49.05        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 
       19.99        42.02         2.96        30.97        78.87        44.71 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1698 TCGA-29-1702 TCGA-29-1703 
      101.75        38.53         0.79        68.28        18.64        59.67 
TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 
       34.62        85.68        62.93        39.09        31.23        24.36 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2429 TCGA-29-2431 
        5.36        34.62        86.17        65.00         4.87        42.25 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 
       11.84        11.47         9.76        38.07        51.91         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1867 
       15.68         0.26        48.07        44.91         6.08         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       57.57        24.26        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 
       22.45        29.06        21.53        22.85        22.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2529 TCGA-36-2532 TCGA-36-2534 
       25.74        27.85        24.23        35.05        29.49        29.79 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2549 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
       14.17         6.05        11.47        14.30         9.07         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 
        7.56         7.46         7.63        24.03        11.38         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1741 
        4.34        28.47        48.79        44.84        35.80        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1904 
       43.69         1.41         8.42         5.79        11.41         9.07 
TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1918 
       34.13        37.02        42.48        48.92        56.58        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 
       38.17         1.97         5.52        14.50         3.98        30.61 
TCGA-61-2009 TCGA-61-2016 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
       39.85         1.18        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       15.88         6.35        31.07 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.53               0.26 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            129.96             180.16 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             30.05              26.20 
[1] "0.5 - 130.0 (30.1)" "0.3 - 180.2 (26.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
[1] "hr=" "1"  
D74V2, continuous
D74V3, multiclass
                    clus
vv                   19P LOSS MUTATED 19P LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           137                413
  PERITONEUM (OVARY)                0                  2
D74V4, continuous
D74V5, multiclass
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  I                  2                 14
  II                 7                 19
  III              111                314
  IV                17                 65
D74V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      1  137
  19P LOSS WILD-TYPE    2  414
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 1                  2
  YES              137                414
D74V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED    109   29
  19P LOSS WILD-TYPE  341   75
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO               109                341
  YES               29                 75

Clustering(75) Variable = 19q loss mutation analysis
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    66  71
  19Q LOSS WILD-TYPE 197 214
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               137                411 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                71                214 
$`19Q LOSS MUTATED`
TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       21.57        63.98        49.28        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1654 
       71.47        82.36        55.40        48.89        27.88        47.70 
TCGA-04-1655 TCGA-09-0366 TCGA-09-1659 TCGA-09-1661 TCGA-09-1664 TCGA-09-1667 
       45.34        57.73         9.96        38.43        74.89        61.87 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2049 TCGA-09-2051 TCGA-09-2053 
        5.85         3.02        97.55       112.37        63.09        39.75 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0928 TCGA-10-0937 TCGA-10-0938 TCGA-13-0723 
       26.93        12.46        18.48        15.12        19.86        39.58 
TCGA-13-0751 TCGA-13-0762 TCGA-13-0800 TCGA-13-0803 TCGA-13-0804 TCGA-13-0886 
       55.17        32.25         8.12        43.82        35.28        74.27 
TCGA-13-0899 TCGA-13-0908 TCGA-13-0911 TCGA-13-0919 TCGA-13-0921 TCGA-13-1403 
       56.15        44.84        27.68        14.89         4.64        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1411 TCGA-13-1412 TCGA-13-1489 TCGA-13-1494 
        6.61         7.36         4.21         5.33        82.88        38.17 
TCGA-13-1496 TCGA-13-1498 TCGA-13-1510 TCGA-23-1021 TCGA-23-1024 TCGA-23-1030 
        4.24        37.61         2.56        47.54        15.39        29.10 
TCGA-23-1032 TCGA-23-1119 TCGA-23-1120 TCGA-23-1123 TCGA-23-1124 TCGA-23-2643 
        2.24       129.96         4.27        33.47        58.13         4.70 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1413 
        7.63        19.63        41.56         7.66        22.32         6.31 
TCGA-24-1424 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1470 TCGA-24-1549 
        6.02        72.92        12.46       105.99         3.42        56.58 
TCGA-24-1560 TCGA-24-1565 TCGA-24-1846 TCGA-24-2019 TCGA-24-2024 TCGA-24-2026 
       44.09        10.26         4.37         4.87        58.16        34.82 
TCGA-24-2260 TCGA-24-2290 TCGA-24-2298 TCGA-25-1315 TCGA-25-1316 TCGA-25-1628 
       36.16        36.23        53.26        51.06        37.02        20.58 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2399 TCGA-25-2409 
       85.05         1.02        38.04         3.02        19.99        26.96 
TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1705 TCGA-29-1707 
       38.53        33.70        31.17         0.53        18.25        41.95 
TCGA-29-1710 TCGA-29-1763 TCGA-29-1769 TCGA-29-1771 TCGA-29-1778 TCGA-29-2427 
       29.23        66.77        22.98        22.52        14.93        62.47 
TCGA-30-1853 TCGA-30-1861 TCGA-30-1866 TCGA-30-1891 TCGA-31-1953 TCGA-31-1955 
       36.26        34.78        36.62        30.05         6.71        42.51 
TCGA-31-1956 TCGA-36-1568 TCGA-36-1575 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 
       44.09        28.73         8.55        24.23        24.69        33.01 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2551 TCGA-57-1584 TCGA-59-2372 TCGA-61-1725 
       25.91        25.08        16.14        21.14        44.78        31.40 
TCGA-61-1733 TCGA-61-1903 TCGA-61-1907 TCGA-61-1915 TCGA-61-1917 TCGA-61-2002 
       31.76        13.02        31.30        67.73        43.43        17.98 
TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 TCGA-61-2102 TCGA-61-2614 
       45.96         4.80         4.77         6.48         8.58 

$`19Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1351 
       18.51        11.87        65.49        63.06        48.76        65.46 
TCGA-04-1361 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       32.52        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 
       29.06        84.20        28.64        64.64        36.23        31.86 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 TCGA-09-1662 TCGA-09-1665 
       29.16         9.47        17.95        35.54        89.33        41.59 
TCGA-09-1666 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-2043 
       57.57        55.36        30.48        17.98         8.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2054 TCGA-10-0925 
        6.12        35.15         4.50        71.11        20.91        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       25.91        81.47        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 
       35.41        35.80         6.21        24.59        44.55         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 
       12.39        31.07        15.19        17.79         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.38        11.54        34.06        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        7.79         8.28         8.19        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
      107.18        91.40        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       69.01        43.36        57.47        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 
       48.33        47.84        44.94        37.08        34.06        29.98 
TCGA-13-0916 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1407 TCGA-13-1408 
       21.14        13.81         6.41         6.08         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        6.84         4.70        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       98.04        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1495 TCGA-13-1497 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       49.22        54.31        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 
        4.21         4.41         4.77         4.14         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 
       19.07        16.67         2.93         2.66        42.51        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1031 TCGA-23-1109 
       26.83        31.73        49.41         8.81        18.87        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       54.51         3.22        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1121 TCGA-23-1122 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 
       86.01         6.38        39.09         0.53        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 
       87.48        91.66        77.00        49.84         2.76         4.50 
TCGA-24-0970 TCGA-24-0975 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1416 
       11.64        21.80        54.08        63.55        47.41         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 
        7.82         7.99         7.86         0.76         6.25         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1466 TCGA-24-1469 TCGA-24-1471 TCGA-24-1474 
       43.53         8.55        45.14         9.11         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 
       26.96        57.37        64.27        16.21        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       45.50        47.70        25.87        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       48.33        38.24         8.32         3.48         3.72         3.81 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 
       16.41        11.05        81.11       151.99        44.84       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       57.07         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
       44.58         0.82        67.36        16.64        33.11        55.86 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
        1.02        26.93        31.99         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1877 
       18.02        15.78         0.36         7.86         0.30        18.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2397 TCGA-25-2398 TCGA-25-2400 TCGA-25-2401 
       13.02        49.05        12.00        45.01        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       29.00        30.97        78.87        44.71        47.18       101.75 
TCGA-29-1695 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1711 
        0.79        68.28        16.90        18.64        59.67        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 
       17.00        85.68        62.93        39.09        31.23        24.36 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 
       17.29        12.36        11.84        12.30         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 
        5.36        34.62        86.17        65.00        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 
        2.47        15.68         0.26        48.07        44.91         6.08 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        1.18        57.57        24.26        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1959 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       18.77        22.45         2.17        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-2529 TCGA-36-2532 
       22.55        30.05        25.74        27.85        35.05        29.49 
TCGA-36-2534 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       29.79        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       20.52        14.17         6.05        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1727 TCGA-61-1728 
        5.39        11.11         8.05        20.94        18.54        27.88 
TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
        4.34        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
        9.07        34.13        37.02        42.48        48.92        56.58 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 
       15.75        38.17         1.97         5.52        14.50         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2018 TCGA-61-2092 
       30.61        39.85        30.64         1.18        45.40        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       15.88         6.35        31.07 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.53               0.26 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            129.96             180.16 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             31.40              26.83 
[1] "0.5 - 130.0 (31.4)" "0.3 - 180.2 (26.8)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
[1] "hr=" "1.1"
D75V2, continuous
D75V3, multiclass
                    clus
vv                   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           137                413
  PERITONEUM (OVARY)                0                  2
D75V4, continuous
D75V5, multiclass
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  I                  4                 12
  II                 7                 19
  III              110                315
  IV                16                 66
D75V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      0  138
  19Q LOSS WILD-TYPE    3  413
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 0                  3
  YES              138                413
D75V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED    108   30
  19Q LOSS WILD-TYPE  342   74
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO               108                342
  YES               30                 74

Clustering(76) Variable = 20p loss mutation analysis
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    23  12
  20P LOSS WILD-TYPE 240 273
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                35                513 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                12                273 
$`20P LOSS MUTATED`
TCGA-04-1336 TCGA-04-1536 TCGA-09-2048 TCGA-10-0930 TCGA-13-0804 TCGA-13-0893 
       49.15        29.06         4.50        33.24        35.28        43.36 
TCGA-13-0921 TCGA-13-1489 TCGA-13-1494 TCGA-13-1495 TCGA-13-2071 TCGA-20-1682 
        4.64        82.88        38.17        49.22         6.28        27.48 
TCGA-20-1687 TCGA-23-1022 TCGA-23-1028 TCGA-23-1118 TCGA-23-1119 TCGA-24-0975 
        2.66        42.51        49.41        86.01       129.96        21.80 
TCGA-24-1417 TCGA-24-1428 TCGA-24-1463 TCGA-24-1471 TCGA-24-1552 TCGA-24-1603 
        7.82        17.36        72.92         1.18        41.39        90.15 
TCGA-24-2298 TCGA-25-2392 TCGA-29-1693 TCGA-29-1711 TCGA-29-1781 TCGA-29-2434 
       53.26         1.02       101.75        34.62         8.35        11.47 
TCGA-29-2436 TCGA-36-1577 TCGA-61-1734 TCGA-61-1737 TCGA-61-2088 
        9.76        25.74        28.47        44.84         4.77 

$`20P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
      119.08        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.15         6.12        35.15       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       81.47        18.48        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.80        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.28         8.19        43.82        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       67.99        69.01        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       70.82        52.44        73.55         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-20-0987 TCGA-20-0990 
       12.23         8.58        10.78         8.75        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       26.20        72.20        25.38        19.07        16.67         2.93 
TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1029 
       47.54        40.54        15.39        26.83        31.73         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       29.10        18.87         2.24        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1120 TCGA-23-1121 
       31.20        68.68         4.57        33.30         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 
       39.09        33.47        58.13         0.53        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0979 TCGA-24-0980 
        4.50         7.63        19.63        11.64        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        5.36         4.80        28.34        19.17        18.67        43.53 
TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
        8.55        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       41.06        51.91        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       17.23        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       33.11        55.86         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       35.54        51.22        14.93        24.99        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       13.02        49.05        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        44.71        47.18        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
       31.17        68.28         0.53        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       18.25        41.95        29.23        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 
       17.29        12.36        11.84        12.30        14.93         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        5.36        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
        4.87        42.25        11.84        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 
       22.85        22.55         8.55        30.05        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       20.52        14.17         6.05        16.14        11.47        14.30 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
        9.07         9.44         7.56         7.46         7.63        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       11.38        21.14         1.74        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       48.79        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       31.30        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       17.98         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96        45.40         4.80        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       58.39        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       20.68        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              1.02               0.26 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            129.96             180.16 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             33.24              27.88 
[1] "1.0 - 130.0 (33.2)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
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  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D76V2, continuous
D76V3, multiclass
                    clus
vv                   20P LOSS MUTATED 20P LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            35                515
  PERITONEUM (OVARY)                0                  2
D76V4, continuous
D76V5, multiclass
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  I                  1                 15
  II                 1                 25
  III               26                399
  IV                 7                 75
D76V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      1   34
  20P LOSS WILD-TYPE    2  517
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 1                  2
  YES               34                517
D76V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     32    3
  20P LOSS WILD-TYPE  418  101
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                32                418
  YES                3                101

Clustering(77) Variable = 20q loss mutation analysis
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED    14   7
  20Q LOSS WILD-TYPE 249 278
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                21                527 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 7                278 
$`20Q LOSS MUTATED`
TCGA-04-1336 TCGA-09-2048 TCGA-13-0804 TCGA-13-1489 TCGA-13-1494 TCGA-13-1495 
       49.15         4.50        35.28        82.88        38.17        49.22 
TCGA-13-2059 TCGA-23-1028 TCGA-23-1118 TCGA-23-1119 TCGA-23-2072 TCGA-24-1428 
       12.23        49.41        86.01       129.96        24.95        17.36 
TCGA-24-1463 TCGA-24-1471 TCGA-24-1552 TCGA-24-2030 TCGA-24-2298 TCGA-29-1781 
       72.92         1.18        41.39        53.95        53.26         8.35 
TCGA-61-1734 TCGA-61-2002 TCGA-61-2088 
       28.47        17.98         4.77 

$`20Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       29.16         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 
       55.36        30.48        17.98         5.85         3.02         8.55 
TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 
       97.55         6.15         6.12        35.15       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       25.91        81.47        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       21.14        14.89        13.81         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       10.88         6.61         7.36         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        4.70         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 
       29.39        98.04        20.68        22.39        70.82        52.44 
TCGA-13-1492 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       73.55         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
        2.56         3.88         3.09        14.24         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       47.54        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1120 
        3.22        31.20        68.68         4.57        33.30         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 
        6.38        39.09        33.47        58.13         0.53       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 
        6.02         5.95         5.36         4.80        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       18.67        43.53         8.55        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        9.11         3.42        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 
       16.21        56.58        41.06        51.91        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       70.62        39.88        19.53        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       38.24         8.32         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       16.41        11.05        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 
       58.16        34.82       109.68        14.43        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 
       36.23        16.64        33.11        55.86         1.02        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       18.05        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 
       12.36        11.84        12.30        14.93         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 
       20.98        18.31        20.52        14.17         6.05        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       11.47        14.30         9.07         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.63        24.03        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
        4.34        31.76        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       13.02         9.07        34.13        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       48.92        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        1.97         5.52        14.50         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 
       30.64         1.18        45.96        45.40         4.80        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       51.91        15.88         6.35        31.07         8.58 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              1.18               0.26 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            129.96             180.16 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             38.17              27.88 
[1] "1.2 - 130.0 (38.2)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED"   "20Q LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "2.2"
D77V2, continuous
D77V3, multiclass
                    clus
vv                   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            21                529
  PERITONEUM (OVARY)                0                  2
D77V4, continuous
D77V5, multiclass
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  I                  1                 15
  II                 0                 26
  III               18                407
  IV                 2                 80
D77V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0   21
  20Q LOSS WILD-TYPE    3  530
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 0                  3
  YES               21                530
D77V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED     18    3
  20Q LOSS WILD-TYPE  432  101
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                18                432
  YES                3                101

Clustering(78) Variable = 21q loss mutation analysis
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    65  79
  21Q LOSS WILD-TYPE 198 206
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               144                404 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                79                206 
$`21Q LOSS MUTATED`
TCGA-04-1335 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1365 TCGA-04-1638 
        1.81        63.98        65.46        49.28        76.54        55.40 
TCGA-04-1648 TCGA-04-1654 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       28.64        47.70        35.54         9.96        38.43        89.33 
TCGA-09-1669 TCGA-09-1675 TCGA-09-2049 TCGA-09-2051 TCGA-09-2056 TCGA-10-0926 
       30.48        97.55       112.37        63.09        12.46        25.91 
TCGA-10-0927 TCGA-10-0930 TCGA-10-0937 TCGA-13-0723 TCGA-13-0730 TCGA-13-0751 
       81.47        33.24        15.12        39.58        17.79        55.17 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0791 TCGA-13-0792 TCGA-13-0794 TCGA-13-0803 
       11.38        34.06        38.93        36.72        30.35        43.82 
TCGA-13-0883 TCGA-13-0887 TCGA-13-0891 TCGA-13-0899 TCGA-13-0906 TCGA-13-0912 
       68.91        66.64        69.01        56.15        44.94        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 TCGA-13-0921 TCGA-13-1404 TCGA-13-1409 
       29.98        21.14        13.81         4.64         6.61         6.84 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1507 
       22.39        70.82        38.17        49.22        54.31         4.77 
TCGA-13-2061 TCGA-20-1682 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 
       10.78        27.48        19.07         2.93         2.66        42.51 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1113 TCGA-23-1114 TCGA-23-1124 
       29.10        18.87         2.24        31.20        68.68        58.13 
TCGA-23-2072 TCGA-23-2077 TCGA-24-0968 TCGA-24-0975 TCGA-24-1103 TCGA-24-1105 
       24.95       115.89        19.63        21.80        54.08        47.41 
TCGA-24-1413 TCGA-24-1418 TCGA-24-1422 TCGA-24-1425 TCGA-24-1431 TCGA-24-1434 
        6.31         7.99         0.76         5.95        19.17        18.67 
TCGA-24-1471 TCGA-24-1548 TCGA-24-1557 TCGA-24-1567 TCGA-24-1604 TCGA-24-1614 
        1.18        16.21        39.88        17.23        88.34        48.33 
TCGA-24-1846 TCGA-24-1850 TCGA-24-1920 TCGA-24-1924 TCGA-24-1930 TCGA-24-2023 
        4.37         5.49         9.80        30.21        81.11        44.84 
TCGA-24-2026 TCGA-24-2267 TCGA-24-2298 TCGA-25-1316 TCGA-25-1318 TCGA-25-1320 
       34.82        47.54        53.26        37.02        34.98        36.95 
TCGA-25-1321 TCGA-25-1625 TCGA-25-1630 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       33.96        18.02         7.86        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1871 TCGA-25-2396 TCGA-29-1691 TCGA-29-1695 TCGA-29-1699 
       51.22        24.99         3.02        47.18         0.79         0.53 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1763 TCGA-29-1769 TCGA-29-1770 TCGA-29-1774 
       34.62        17.00        66.77        22.98        24.36        17.29 
TCGA-29-1775 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
       12.36         5.36        34.62        86.17        65.00        62.47 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1859 TCGA-30-1866 
       38.07        51.91        36.26         2.47        48.07        36.62 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1950 TCGA-31-1956 TCGA-36-1575 TCGA-36-1581 
       30.05        48.79        18.77        44.09         8.55        24.69 
TCGA-36-2530 TCGA-36-2538 TCGA-36-2548 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
       33.01        25.08        14.17        25.05        25.02       180.16 
TCGA-59-2372 TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1899 
       44.78        18.54         4.34        31.76        28.47         8.42 
TCGA-61-1913 TCGA-61-1918 TCGA-61-1919 TCGA-61-2008 TCGA-61-2016 TCGA-61-2094 
       48.92        15.75        38.17        30.61         1.18        71.74 

$`21Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1361 
       11.87        65.49        63.06        48.76        21.57        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       44.32        33.67        71.47        82.36        56.55        41.59 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 
       19.99        38.37       119.08        29.06        84.20        48.89 
TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 
       27.88        64.64        36.23        31.86        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.47        57.73        17.95        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 
       61.87        55.36        17.98         5.85         3.02         8.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2053 
        6.15         6.12        35.15         4.50        71.11        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 
       20.91        26.93        54.31        18.48        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
        3.88        35.41        35.80        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0755 
       44.55         2.73        12.39        31.07        15.19         2.47 
TCGA-13-0757 TCGA-13-0760 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.18        11.54        32.25        31.04        21.40         8.42 
TCGA-13-0793 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       28.70        19.56         8.71         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 
        8.19        35.28        35.28        13.61       107.18        91.40 
TCGA-13-0886 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 
       74.27        70.39        61.81        67.99        43.36        57.47 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 
       57.07        19.36        47.38        48.33        47.84        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0919 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       37.08        27.68        14.89         6.41         6.08        10.88 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        7.36         6.05         5.92         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 
       82.88        52.44        73.55         4.24        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 
       13.97        32.84        16.57         4.21         4.41         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        2.56         3.88         3.09        14.24        12.23         8.58 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1683 TCGA-20-1685 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
       25.38        16.67        47.54        40.54        15.39        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       31.73        49.41         8.81        51.35        54.51         3.22 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       39.09        33.47         0.53        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0970 
       49.84         2.76         4.70         4.50         7.63        11.64 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1416 TCGA-24-1417 
       41.56         7.66        22.32        63.55         6.38         7.82 
TCGA-24-1419 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        7.86         6.25         6.02         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       28.34        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
      105.99         9.11         3.42        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       64.27        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       88.50        70.62        19.53        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       25.87        10.26        90.15        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 TCGA-24-1923 TCGA-24-1927 
        3.72         3.81        11.28         5.75        22.65        16.41 
TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
       11.05         4.87       151.99        58.16       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       36.16         0.79         0.36        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1317 TCGA-25-1319 
        1.02        26.93        31.99        51.06         1.02        65.00 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 
        2.99        12.00         2.96        18.58        15.78         0.36 
TCGA-25-1628 TCGA-25-1631 TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       20.58         0.30        14.93        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       49.05         1.02        38.04        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
       44.71       101.75        38.53        33.70        31.17        68.28 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1771 TCGA-29-1776 
       85.68        62.93        39.09        31.23        22.52        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-2428 TCGA-29-2429 
       12.30        14.93         8.35         7.20        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1856 TCGA-30-1857 
       42.25        11.84        11.47         9.76        15.68         0.26 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       44.91        34.78         6.08         1.18        57.57        24.26 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 
       45.57        30.18        22.45         6.71        42.51         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 
       28.73        29.06        21.53        22.85        22.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2529 TCGA-36-2532 TCGA-36-2534 
       25.74        27.85        24.23        35.05        29.49        29.79 
TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.91        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 
       20.52         6.05        16.14        11.47        14.30         9.07 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-59-2349 TCGA-59-2350 
       21.14         1.74        22.32        28.96        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 
      116.12         9.40        34.39         2.14         5.39        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1736 TCGA-61-1737 
        8.05        20.94        31.40        27.88        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1900 
       35.80         2.43        33.67        43.69         1.41         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1995 TCGA-61-1998 
       42.48        56.58        67.73        43.43         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2017 
       14.50        17.98         3.98        39.85        30.64        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 
       45.40         4.80         4.77        51.72        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       44.52       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.53               0.26 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            180.16             151.99 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            32.385             26.070 
[1] "0.5 - 180.2 (32.4)" "0.3 - 152.0 (26.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
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  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2613         TCGA-61-2614 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
D78V3, multiclass
                    clus
vv                   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           145                405
  PERITONEUM (OVARY)                0                  2
D78V4, continuous
D78V5, multiclass
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  I                  5                 11
  II                 5                 21
  III              115                310
  IV                17                 65
D78V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      1  144
  21Q LOSS WILD-TYPE    2  407
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 1                  2
  YES              144                407
D78V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED    113   32
  21Q LOSS WILD-TYPE  337   72
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO               113                337
  YES               32                 72

Clustering(79) Variable = 22q loss mutation analysis
D79V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED   173 199
  22Q LOSS WILD-TYPE  90  86
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               372                176 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               199                 86 
$`22Q LOSS MUTATED`
TCGA-04-1331 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1346 
       40.24        49.15         2.01        46.62        18.51        65.49 
TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 
       63.06        21.57        63.98        65.46        49.28        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 
       44.32        76.54        71.47        82.36        56.55        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
       38.37       119.08        84.20        55.40        48.89        27.88 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       64.64        36.23        31.86        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       57.73        17.95        35.54        38.43        89.33        74.89 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 
       57.57        61.87        55.36        30.48        17.98         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        8.55        97.55         6.12         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       63.09        39.75        20.91        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0937 TCGA-10-0938 
       81.47        18.48        32.28        11.70        15.12        19.86 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 
       24.59        44.55        39.58        12.39        15.19        17.79 
TCGA-13-0751 TCGA-13-0757 TCGA-13-0761 TCGA-13-0766 TCGA-13-0791 TCGA-13-0794 
       55.17        11.18        34.06        21.40        38.93        30.35 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       35.28        13.61        68.91        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0900 
       70.39        61.81        67.99        69.01        57.47        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       19.36        47.38        48.33        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 
       27.68        34.06        29.98        21.14        14.89         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
        6.41         6.08         6.61         6.05         5.92         6.84 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1487 
        4.21         5.33        87.06        61.71        29.39        22.39 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       82.88        52.44        73.55        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       54.31        37.61        13.97        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        4.77         4.14         3.09        14.24        12.23         8.58 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 TCGA-20-0991 TCGA-20-1682 TCGA-20-1683 
        8.75         6.28        25.94        26.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 
       19.07        16.67         2.66        47.54        42.51        15.39 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 TCGA-23-1122 
       51.35        54.51        31.20        68.68        33.30        39.09 
TCGA-23-2072 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       24.95        87.48        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 
        4.50         7.63        11.64        21.80        41.56        22.32 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1464 
        4.80        17.36        19.17        18.67        43.53        12.46 
TCGA-24-1466 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1548 
       45.14         1.18        22.19        26.96        57.37        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 TCGA-24-1555 TCGA-24-1557 TCGA-24-1560 
       56.58        41.06        41.39        88.50        39.88        44.09 
TCGA-24-1562 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       45.50        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1850 TCGA-24-1920 
       38.24         3.48         3.72         4.37         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2026 
       22.65        30.21        81.11         4.87        44.84        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2036 TCGA-24-2254 
      109.68        14.43        53.95        18.48        64.01        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2288 
       36.16         0.79         0.36        47.54        31.63         0.82 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2298 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 
       16.64        33.11        53.26         1.02        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1628 TCGA-25-1631 TCGA-25-1632 
        2.99         2.96        18.58        20.58         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 
       60.59        35.54        51.22        14.93        24.99        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       13.02        49.05        38.04        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1693 TCGA-29-1694 
       42.02        29.00        30.97        26.96       101.75        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 
        0.79        33.70        31.17        68.28        16.90        18.64 
TCGA-29-1703 TCGA-29-1707 TCGA-29-1711 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 
       59.67        41.95        34.62        17.00        66.77        39.09 
TCGA-29-1769 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1783 
       22.98        17.29        12.36        11.84        14.93         7.20 
TCGA-29-1785 TCGA-29-2428 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
       34.62        45.11        38.07        36.26         2.47        15.68 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 
       48.07        44.91         6.08        36.62        57.57        24.26 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 
       48.79        45.57        22.45         6.71        42.51         2.17 
TCGA-36-1568 TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       28.73        22.85         8.55        25.74        24.23        24.69 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       33.01        29.49        29.79        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2588 
        2.24        20.98        14.17        16.14        11.47         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.56         7.46         7.63        24.03        11.38        21.14 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2350 TCGA-59-2352 
       28.96        25.05        25.02       180.16        22.32         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1725 TCGA-61-1728 
       34.39         2.14         5.39        44.78        31.40        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
        4.34        31.76        48.79        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1906 TCGA-61-1907 
       43.69         8.42         5.79        11.41        34.13        31.30 
TCGA-61-1910 TCGA-61-1913 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       37.02        48.92        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2012 TCGA-61-2016 
        1.97         5.52        14.50         3.98        30.64         1.18 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       45.40         4.80         4.77        58.39        60.62        65.49 
TCGA-61-2102 TCGA-61-2109 TCGA-61-2110 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.48        20.68        44.52         6.35        31.07         8.58 

$`22Q LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1343 TCGA-04-1348 TCGA-04-1364 TCGA-04-1516 
       41.00         1.81        11.87        48.76        33.67        41.59 
TCGA-04-1536 TCGA-04-1648 TCGA-04-1654 TCGA-09-1659 TCGA-09-1665 TCGA-09-1672 
       29.06        28.64        47.70         9.96        41.59         5.85 
TCGA-09-2043 TCGA-09-2045 TCGA-09-2055 TCGA-10-0930 TCGA-10-0934 TCGA-10-0935 
        6.15        35.15        26.93        33.24         3.88        35.41 
TCGA-10-0936 TCGA-13-0714 TCGA-13-0724 TCGA-13-0726 TCGA-13-0755 TCGA-13-0758 
       35.80         6.21         2.73        31.07         2.47        11.38 
TCGA-13-0760 TCGA-13-0762 TCGA-13-0764 TCGA-13-0768 TCGA-13-0792 TCGA-13-0793 
       11.54        32.25        31.04         8.42        36.72        28.70 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0884 TCGA-13-0893 TCGA-13-0899 TCGA-13-0905 
       19.56         8.71       107.18        43.36        56.15        47.84 
TCGA-13-0920 TCGA-13-1403 TCGA-13-1405 TCGA-13-1410 TCGA-13-1477 TCGA-13-1484 
       13.81        10.88         7.36         4.70        54.61        98.04 
TCGA-13-1485 TCGA-13-1488 TCGA-13-1499 TCGA-13-1501 TCGA-13-1510 TCGA-13-1511 
       20.68        70.82        38.37        32.84         2.56         3.88 
TCGA-13-2061 TCGA-20-0987 TCGA-20-0996 TCGA-20-1686 TCGA-23-1023 TCGA-23-1026 
       10.78        23.05        72.20         2.93        40.54        26.83 
TCGA-23-1111 TCGA-23-1116 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        3.22         4.57        86.01       129.96         4.27         6.38 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-24-0968 
       33.47        58.13         0.53       115.89        91.66        19.63 
TCGA-24-0980 TCGA-24-1103 TCGA-24-1430 TCGA-24-1436 TCGA-24-1463 TCGA-24-1467 
        7.66        54.08        28.34         8.55        72.92       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1546 TCGA-24-1551 TCGA-24-1553 TCGA-24-1556 
        9.11         3.42        64.27        51.91        58.09        70.62 
TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 TCGA-24-1842 TCGA-24-1845 TCGA-24-1847 
       19.53        47.70        25.87         8.32         3.81        11.28 
TCGA-24-1849 TCGA-24-1927 TCGA-24-1928 TCGA-24-2020 TCGA-24-2024 TCGA-24-2035 
        5.75        16.41        11.05       151.99        58.16        28.18 
TCGA-24-2038 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 TCGA-24-2290 TCGA-24-2297 
       44.48        70.45        44.58        67.36        36.23        55.86 
TCGA-25-1313 TCGA-25-1323 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 
       26.93        12.00        18.02        15.78         0.36         7.86 
TCGA-25-1877 TCGA-25-2392 TCGA-25-2396 TCGA-25-2401 TCGA-29-1688 TCGA-29-1690 
       18.05         1.02         3.02         2.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1699 TCGA-29-1705 TCGA-29-1710 TCGA-29-1762 TCGA-29-1764 
       47.18         0.53        18.25        29.23        85.68        62.93 
TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 
       31.23        24.36        22.52        12.30         8.35         5.36 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       86.17        65.00        62.47         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1857 TCGA-30-1861 TCGA-30-1867 
       11.47         9.76        51.91         0.26        34.78         1.18 
TCGA-30-1891 TCGA-31-1946 TCGA-31-1950 TCGA-31-1956 TCGA-36-1569 TCGA-36-1570 
       30.05        30.18        18.77        44.09        29.06        21.53 
TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 TCGA-36-2529 TCGA-36-2537 TCGA-36-2545 
       22.55        30.05        27.85        35.05        25.91        18.31 
TCGA-36-2547 TCGA-36-2549 TCGA-42-2582 TCGA-42-2587 TCGA-57-1585 TCGA-57-1586 
       20.52         6.05        14.30         9.07         1.74        22.32 
TCGA-59-2349 TCGA-59-2351 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1727 
       80.12       116.12        11.11         8.05        20.94        18.54 
TCGA-61-1734 TCGA-61-1737 TCGA-61-1895 TCGA-61-1903 TCGA-61-1904 TCGA-61-1911 
       28.47        44.84         1.41        13.02         9.07        42.48 
TCGA-61-1914 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2017 TCGA-61-2092 
       56.58        17.98        30.61        39.85        45.96        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2101 TCGA-61-2104 TCGA-61-2111 TCGA-61-2113 
       71.74        61.64        55.50        76.83       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 
       51.91        15.88 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.30               0.26 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            180.16             151.99 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             28.98              27.39 
[1] "0.3 - 180.2 (29.0)" "0.3 - 152.0 (27.4)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2549         TCGA-36-2551 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-36-2552         TCGA-42-2582         TCGA-42-2587 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-42-2588         TCGA-42-2589         TCGA-42-2590 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-42-2591         TCGA-57-1582         TCGA-57-1583 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-57-1584         TCGA-57-1585         TCGA-57-1586 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-57-1992         TCGA-57-1993         TCGA-57-1994 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-59-2348         TCGA-59-2349         TCGA-59-2350 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-59-2351         TCGA-59-2352         TCGA-59-2354 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-59-2355         TCGA-59-2363         TCGA-59-2372 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-1721         TCGA-61-1722         TCGA-61-1724 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-61-1725         TCGA-61-1727         TCGA-61-1728 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-61-1730         TCGA-61-1733         TCGA-61-1734 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-61-1736         TCGA-61-1737         TCGA-61-1738 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-61-1740         TCGA-61-1741         TCGA-61-1743 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-1895         TCGA-61-1899         TCGA-61-1900 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-1901         TCGA-61-1903         TCGA-61-1904 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-61-1906         TCGA-61-1907         TCGA-61-1910 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-1911         TCGA-61-1913         TCGA-61-1914 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-61-1915         TCGA-61-1917         TCGA-61-1918 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-1919         TCGA-61-1995         TCGA-61-1998 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-2000         TCGA-61-2002         TCGA-61-2003 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-61-2008         TCGA-61-2009         TCGA-61-2012 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-61-2016         TCGA-61-2017         TCGA-61-2018 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-61-2087         TCGA-61-2088         TCGA-61-2092 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-61-2094         TCGA-61-2095         TCGA-61-2096 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2101 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-61-2102         TCGA-61-2104         TCGA-61-2109 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-61-2110         TCGA-61-2111         TCGA-61-2113 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-61-2610         TCGA-61-2611         TCGA-61-2612 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-61-2613         TCGA-61-2614 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
[1] "hr=" "1.1"
D79V2, continuous
D79V3, multiclass
                    clus
vv                   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           374                176
  PERITONEUM (OVARY)                1                  1
D79V4, continuous
D79V5, multiclass
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  I                  7                  9
  II                18                  8
  III              293                132
  IV                53                 29
D79V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      3  373
  22Q LOSS WILD-TYPE    0  178
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 3                  0
  YES              373                178
D79V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED    305   71
  22Q LOSS WILD-TYPE  145   33
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO               305                145
  YES               71                 33

Clustering(80) Variable = Xq loss mutation analysis
D80V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED    51  47
  XQ LOSS WILD-TYPE 212 238
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               98               450 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               47               238 
$`XQ LOSS MUTATED`
TCGA-04-1331 TCGA-04-1336 TCGA-04-1347 TCGA-04-1364 TCGA-04-1367 TCGA-04-1638 
       40.24        49.15        63.06        33.67        71.47        55.40 
TCGA-04-1654 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1666 TCGA-09-1667 
       47.70        17.95        35.54         9.96        57.57        61.87 
TCGA-09-1675 TCGA-09-2049 TCGA-09-2056 TCGA-10-0928 TCGA-10-0930 TCGA-10-0937 
       97.55       112.37        12.46        18.48        33.24        15.12 
TCGA-10-0938 TCGA-13-0723 TCGA-13-0799 TCGA-13-0801 TCGA-13-0883 TCGA-13-0887 
       19.86        39.58         7.79         8.28        68.91        66.64 
TCGA-13-0891 TCGA-13-0908 TCGA-13-0913 TCGA-13-1405 TCGA-13-1407 TCGA-13-1412 
       69.01        44.84        29.98         7.36         6.05         5.33 
TCGA-13-1483 TCGA-13-1491 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1507 
       29.39        52.44        49.22        54.31        37.61         4.77 
TCGA-13-2061 TCGA-20-1682 TCGA-20-1683 TCGA-23-1022 TCGA-23-1028 TCGA-23-1032 
       10.78        27.48        25.38        42.51        49.41         2.24 
TCGA-23-1113 TCGA-23-1120 TCGA-23-2079 TCGA-23-2081 TCGA-24-0980 TCGA-24-1413 
       31.20         4.27        91.66        77.00         7.66         6.31 
TCGA-24-1419 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1427 TCGA-24-1466 
        7.86         6.25         6.02         5.95         4.80        45.14 
TCGA-24-1549 TCGA-24-2023 TCGA-24-2033 TCGA-24-2260 TCGA-24-2262 TCGA-24-2280 
       56.58        44.84        18.48        36.16         0.36        70.45 
TCGA-24-2289 TCGA-24-2290 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1625 
       67.36        36.23         1.02        31.99        51.06        18.02 
TCGA-25-1870 TCGA-25-2392 TCGA-29-1693 TCGA-29-1696 TCGA-29-1697 TCGA-29-1702 
       14.93         1.02       101.75        33.70        31.17        18.64 
TCGA-29-1703 TCGA-29-1761 TCGA-29-1762 TCGA-29-1775 TCGA-29-1777 TCGA-29-1781 
       59.67        17.00        85.68        12.36        12.30         8.35 
TCGA-29-2414 TCGA-30-1853 TCGA-30-1891 TCGA-31-1955 TCGA-31-1956 TCGA-36-1575 
       86.17        36.26        30.05        42.51        44.09         8.55 
TCGA-36-2538 TCGA-42-2582 TCGA-42-2589 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 
       25.08        14.30         7.56         1.74        28.96        25.05 
TCGA-57-1994 TCGA-59-2363 TCGA-61-1724 TCGA-61-1733 TCGA-61-1995 TCGA-61-2098 
       25.02         5.39        20.94        31.76         1.97        65.49 
TCGA-61-2104 TCGA-61-2113 
       76.83        22.22 

$`XQ LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 
       41.00         1.81         2.01        46.62        18.51        11.87 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       65.49        48.76        21.57        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       32.52        44.32        76.54        82.36        56.55        41.59 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 
       19.99        38.37       119.08        29.06        84.20        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 
       27.88        28.64        64.64        36.23        31.86        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       29.16         9.47        57.73        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       41.59        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 
        8.55         6.15         6.12        35.15         4.50        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 TCGA-10-0926 
       63.09        39.75        20.91        26.93        54.31        25.91 
TCGA-10-0927 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       81.47        32.28        11.70         3.88        35.41        35.80 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
        6.21        24.59        44.55         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0800 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.12         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
      107.18        91.40        74.27        70.39        61.81        67.99 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       48.33        47.84        44.94        37.08        27.68        34.06 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       21.14        14.89        13.81         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
       10.88         6.61         5.92         6.84         4.70         4.21 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       54.61        87.06        61.71        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 TCGA-13-1499 
       70.82        82.88        73.55        38.17         4.24        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 
       13.97        32.84        16.57         4.21         4.41         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        2.56         3.88         3.09        14.24        12.23         8.58 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 
       19.07        16.67         2.93         2.66        47.54        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       15.39        26.83        31.73         8.81        29.10        18.87 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       51.35        54.51         3.22        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
       86.01       129.96         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2084 TCGA-23-2641 
        0.53        24.95       115.89        87.48        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1416 
       41.56        22.32        54.08        63.55        47.41         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1426 TCGA-24-1428 TCGA-24-1430 
        7.82         7.99         0.76         5.36        17.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       19.17        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       57.37        64.27        16.21        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       58.09        88.50        70.62        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       45.50        47.70        25.87        10.26        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       88.34        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.81         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
      151.99        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2267 
       28.18        64.01        44.48        57.07         0.79        47.54 
TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
       31.63        44.58         0.82        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       53.26        26.93        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       15.78         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       60.59        35.54        51.22        24.99        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       13.02        49.05        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 TCGA-29-1698 
       78.87        44.71        47.18        38.53         0.79        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
        0.53        16.90        18.25        41.95        29.23        34.62 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       66.77        62.93        39.09        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 
       22.52        17.29        11.84        14.93         7.20         5.36 
TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
       34.62        65.00        62.47        45.11         4.87        42.25 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 
       11.84        11.47         9.76        38.07        51.91         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 
       36.62         1.18        57.57        24.26        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1959 TCGA-36-1568 
       30.18        18.77        22.45         6.71         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 
       29.06        21.53        22.85        22.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       29.79        25.91        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 
       18.31        20.52        14.17         6.05        16.14        11.47 
TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.07         9.44         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1586 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       21.14        22.32       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
        9.40        34.39         2.14        44.78        11.11         8.05 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 
       31.40        18.54        27.88         4.34        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       31.30        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       43.43        15.75        38.17         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
        3.98        30.61        39.85        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2101 TCGA-61-2102 TCGA-61-2109 TCGA-61-2110 
       58.39        60.62        55.50         6.48        20.68        44.52 
TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72        51.91        15.88         6.35        31.07         8.58 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.36              0.26 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           112.37            180.16 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           30.015            27.865 
[1] "0.4 - 112.4 (30.0)" "0.3 - 180.2 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-36-2549        TCGA-36-2551        TCGA-36-2552        TCGA-42-2582 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-42-2587        TCGA-42-2588        TCGA-42-2589        TCGA-42-2590 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-42-2591        TCGA-57-1582        TCGA-57-1583        TCGA-57-1584 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-57-1585        TCGA-57-1586        TCGA-57-1992        TCGA-57-1993 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-57-1994        TCGA-59-2348        TCGA-59-2349        TCGA-59-2350 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-59-2351        TCGA-59-2352        TCGA-59-2354        TCGA-59-2355 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-59-2363        TCGA-59-2372        TCGA-61-1721        TCGA-61-1722 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1724        TCGA-61-1725        TCGA-61-1727        TCGA-61-1728 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1730        TCGA-61-1733        TCGA-61-1734        TCGA-61-1736 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1737        TCGA-61-1738        TCGA-61-1740        TCGA-61-1741 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1743        TCGA-61-1895        TCGA-61-1899        TCGA-61-1900 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1901        TCGA-61-1903        TCGA-61-1904        TCGA-61-1906 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1907        TCGA-61-1910        TCGA-61-1911        TCGA-61-1913 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1914        TCGA-61-1915        TCGA-61-1917        TCGA-61-1918 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-1919        TCGA-61-1995        TCGA-61-1998        TCGA-61-2000 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2002        TCGA-61-2003        TCGA-61-2008        TCGA-61-2009 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2012        TCGA-61-2016        TCGA-61-2017        TCGA-61-2018 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2087        TCGA-61-2088        TCGA-61-2092        TCGA-61-2094 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-61-2095        TCGA-61-2096        TCGA-61-2097        TCGA-61-2098 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-61-2101        TCGA-61-2102        TCGA-61-2104        TCGA-61-2109 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-61-2110        TCGA-61-2111        TCGA-61-2113        TCGA-61-2610 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-61-2611        TCGA-61-2612        TCGA-61-2613        TCGA-61-2614 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D80V2, continuous
D80V3, multiclass
                    clus
vv                   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  OMENTUM                          1                 1
  OVARY                           99               451
  PERITONEUM (OVARY)               0                 2
D80V4, continuous
D80V5, multiclass
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  I                 2                14
  II                3                23
  III              79               346
  IV               14                68
D80V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      0  100
  XQ LOSS WILD-TYPE    3  451
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                0                 3
  YES             100               451
D80V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     83   17
  XQ LOSS WILD-TYPE  367   87
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO               83               367
  YES              17                87
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
               "PRIMARY.SITE.OF.DISEASE" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                           "TUMOR.STAGE" 
                                      V6 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V7 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
