
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227198/STAD.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/STAD/1972820/1.GDAC_clinicalDataPicker.Finished/STAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=159, in cluster file=133, common to both=132
[1] "Reduce the number of clustering variables from 95 to 87."
[1]  87 132
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
              17              115 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
              17              115 
[1] "CBWD1 MUTATION ANALYSIS"
[1] 3
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             17             115 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             17             115 
[1] "DNAJC15 MUTATION ANALYSIS"
[1] 3
  DNAJC15 MUTATED DNAJC15 WILD-TYPE 
                3               129 
  DNAJC15 MUTATED DNAJC15 WILD-TYPE 
                3               129 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            17            115 
  KRAS MUTATED KRAS WILD-TYPE 
            17            115 
[1] "RPL22 MUTATION ANALYSIS"
[1] 3
  RPL22 MUTATED RPL22 WILD-TYPE 
             10             122 
  RPL22 MUTATED RPL22 WILD-TYPE 
             10             122 
[1] "SFRS12IP1 MUTATION ANALYSIS"
[1] 3
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
                  5                 127 
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
                  5                 127 
[1] "SMAP1 MUTATION ANALYSIS"
[1] 3
  SMAP1 MUTATED SMAP1 WILD-TYPE 
              5             127 
  SMAP1 MUTATED SMAP1 WILD-TYPE 
              5             127 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            61             71 
  TP53 MUTATED TP53 WILD-TYPE 
            61             71 
[1] "TRIM48 MUTATION ANALYSIS"
[1] 3
  TRIM48 MUTATED TRIM48 WILD-TYPE 
              14              118 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
              14              118 
[1] "ZNF48 MUTATION ANALYSIS"
[1] 3
  ZNF48 MUTATED ZNF48 WILD-TYPE 
              3             129 
  ZNF48 MUTATED ZNF48 WILD-TYPE 
              3             129 
[1] "PGM5 MUTATION ANALYSIS"
[1] 3
  PGM5 MUTATED PGM5 WILD-TYPE 
            18            114 
  PGM5 MUTATED PGM5 WILD-TYPE 
            18            114 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              26              106 
  ARID1A MUTATED ARID1A WILD-TYPE 
              26              106 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
             7            125 
  RHOA MUTATED RHOA WILD-TYPE 
             7            125 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              25              107 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              25              107 
[1] "INO80E MUTATION ANALYSIS"
[1] 3
  INO80E MUTATED INO80E WILD-TYPE 
               9              123 
  INO80E MUTATED INO80E WILD-TYPE 
               9              123 
[1] "FGF22 MUTATION ANALYSIS"
[1] 3
  FGF22 MUTATED FGF22 WILD-TYPE 
              4             128 
  FGF22 MUTATED FGF22 WILD-TYPE 
              4             128 
[1] "OR8H3 MUTATION ANALYSIS"
[1] 3
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             10             122 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             10             122 
[1] "ZNF804B MUTATION ANALYSIS"
[1] 3
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               21               111 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               21               111 
[1] "CDH1 MUTATION ANALYSIS"
[1] 3
  CDH1 MUTATED CDH1 WILD-TYPE 
            13            119 
  CDH1 MUTATED CDH1 WILD-TYPE 
            13            119 
[1] "TUSC3 MUTATION ANALYSIS"
[1] 3
  TUSC3 MUTATED TUSC3 WILD-TYPE 
             11             121 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
             11             121 
[1] "PRRT2 MUTATION ANALYSIS"
[1] 3
  PRRT2 MUTATED PRRT2 WILD-TYPE 
              5             127 
  PRRT2 MUTATED PRRT2 WILD-TYPE 
              5             127 
[1] "PTH2 MUTATION ANALYSIS"
[1] 3
  PTH2 MUTATED PTH2 WILD-TYPE 
             3            129 
  PTH2 MUTATED PTH2 WILD-TYPE 
             3            129 
[1] "C17ORF63 MUTATION ANALYSIS"
[1] 3
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 4                128 
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 4                128 
[1] "IAPP MUTATION ANALYSIS"
[1] 3
  IAPP MUTATED IAPP WILD-TYPE 
             4            128 
  IAPP MUTATED IAPP WILD-TYPE 
             4            128 
[1] "IRF2 MUTATION ANALYSIS"
[1] 3
  IRF2 MUTATED IRF2 WILD-TYPE 
             8            124 
  IRF2 MUTATED IRF2 WILD-TYPE 
             8            124 
[1] "RNF43 MUTATION ANALYSIS"
[1] 3
  RNF43 MUTATED RNF43 WILD-TYPE 
             15             117 
  RNF43 MUTATED RNF43 WILD-TYPE 
             15             117 
[1] "HLA-B MUTATION ANALYSIS"
[1] 3
  HLA-B MUTATED HLA-B WILD-TYPE 
             10             122 
  HLA-B MUTATED HLA-B WILD-TYPE 
             10             122 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
              9             123 
  HLA-A MUTATED HLA-A WILD-TYPE 
              9             123 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              8             124 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              8             124 
[1] "UPF3A MUTATION ANALYSIS"
[1] 3
  UPF3A MUTATED UPF3A WILD-TYPE 
              7             125 
  UPF3A MUTATED UPF3A WILD-TYPE 
              7             125 
[1] "CCDC43 MUTATION ANALYSIS"
[1] 3
  CCDC43 MUTATED CCDC43 WILD-TYPE 
               4              128 
  CCDC43 MUTATED CCDC43 WILD-TYPE 
               4              128 
[1] "PCDH15 MUTATION ANALYSIS"
[1] 3
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              23              109 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              23              109 
[1] "PHF2 MUTATION ANALYSIS"
[1] 3
  PHF2 MUTATED PHF2 WILD-TYPE 
            13            119 
  PHF2 MUTATED PHF2 WILD-TYPE 
            13            119 
[1] "SPRYD5 MUTATION ANALYSIS"
[1] 3
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               8              124 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               8              124 
[1] "SOX1 MUTATION ANALYSIS"
[1] 3
  SOX1 MUTATED SOX1 WILD-TYPE 
             6            126 
  SOX1 MUTATED SOX1 WILD-TYPE 
             6            126 
[1] "POTEG MUTATION ANALYSIS"
[1] 3
  POTEG MUTATED POTEG WILD-TYPE 
              6             126 
  POTEG MUTATED POTEG WILD-TYPE 
              6             126 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            16            116 
  TPTE MUTATED TPTE WILD-TYPE 
            16            116 
[1] "FSHR MUTATION ANALYSIS"
[1] 3
  FSHR MUTATED FSHR WILD-TYPE 
            14            118 
  FSHR MUTATED FSHR WILD-TYPE 
            14            118 
[1] "UNC93B1 MUTATION ANALYSIS"
[1] 3
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
                3               129 
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
                3               129 
[1] "EDNRB MUTATION ANALYSIS"
[1] 3
  EDNRB MUTATED EDNRB WILD-TYPE 
             12             120 
  EDNRB MUTATED EDNRB WILD-TYPE 
             12             120 
[1] "RASA1 MUTATION ANALYSIS"
[1] 3
  RASA1 MUTATED RASA1 WILD-TYPE 
             10             122 
  RASA1 MUTATED RASA1 WILD-TYPE 
             10             122 
[1] "KDM4B MUTATION ANALYSIS"
[1] 3
  KDM4B MUTATED KDM4B WILD-TYPE 
             11             121 
  KDM4B MUTATED KDM4B WILD-TYPE 
             11             121 
[1] "LHCGR MUTATION ANALYSIS"
[1] 3
  LHCGR MUTATED LHCGR WILD-TYPE 
              7             125 
  LHCGR MUTATED LHCGR WILD-TYPE 
              7             125 
[1] "TLR4 MUTATION ANALYSIS"
[1] 3
  TLR4 MUTATED TLR4 WILD-TYPE 
            13            119 
  TLR4 MUTATED TLR4 WILD-TYPE 
            13            119 
[1] "TM7SF4 MUTATION ANALYSIS"
[1] 3
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               8              124 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               8              124 
[1] "IL2RG MUTATION ANALYSIS"
[1] 3
  IL2RG MUTATED IL2RG WILD-TYPE 
              3             129 
  IL2RG MUTATED IL2RG WILD-TYPE 
              3             129 
[1] "PDZRN4 MUTATION ANALYSIS"
[1] 3
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              12              120 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              12              120 
[1] "TSHZ2 MUTATION ANALYSIS"
[1] 3
  TSHZ2 MUTATED TSHZ2 WILD-TYPE 
              7             125 
  TSHZ2 MUTATED TSHZ2 WILD-TYPE 
              7             125 
[1] "POM121L12 MUTATION ANALYSIS"
[1] 3
  POM121L12 MUTATED POM121L12 WILD-TYPE 
                  8                 124 
  POM121L12 MUTATED POM121L12 WILD-TYPE 
                  8                 124 
[1] "WBSCR17 MUTATION ANALYSIS"
[1] 3
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               12               120 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               12               120 
[1] "ZC4H2 MUTATION ANALYSIS"
[1] 3
  ZC4H2 MUTATED ZC4H2 WILD-TYPE 
              6             126 
  ZC4H2 MUTATED ZC4H2 WILD-TYPE 
              6             126 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              6             126 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              6             126 
[1] "KIAA0748 MUTATION ANALYSIS"
[1] 3
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                 8                124 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                 8                124 
[1] "OR2T6 MUTATION ANALYSIS"
[1] 3
  OR2T6 MUTATED OR2T6 WILD-TYPE 
              7             125 
  OR2T6 MUTATED OR2T6 WILD-TYPE 
              7             125 
[1] "CPS1 MUTATION ANALYSIS"
[1] 3
  CPS1 MUTATED CPS1 WILD-TYPE 
            14            118 
  CPS1 MUTATED CPS1 WILD-TYPE 
            14            118 
[1] "CHRM2 MUTATION ANALYSIS"
[1] 3
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              7             125 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              7             125 
[1] "IL13RA2 MUTATION ANALYSIS"
[1] 3
  IL13RA2 MUTATED IL13RA2 WILD-TYPE 
                7               125 
  IL13RA2 MUTATED IL13RA2 WILD-TYPE 
                7               125 
[1] "NDN MUTATION ANALYSIS"
[1] 3
  NDN MUTATED NDN WILD-TYPE 
            8           124 
  NDN MUTATED NDN WILD-TYPE 
            8           124 
[1] "TCEB3C MUTATION ANALYSIS"
[1] 3
  TCEB3C MUTATED TCEB3C WILD-TYPE 
               5              127 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
               5              127 
[1] "ASTN2 MUTATION ANALYSIS"
[1] 3
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             16             116 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             16             116 
[1] "FCRL3 MUTATION ANALYSIS"
[1] 3
  FCRL3 MUTATED FCRL3 WILD-TYPE 
              9             123 
  FCRL3 MUTATED FCRL3 WILD-TYPE 
              9             123 
[1] "PARK2 MUTATION ANALYSIS"
[1] 3
  PARK2 MUTATED PARK2 WILD-TYPE 
              9             123 
  PARK2 MUTATED PARK2 WILD-TYPE 
              9             123 
[1] "POU3F2 MUTATION ANALYSIS"
[1] 3
  POU3F2 MUTATED POU3F2 WILD-TYPE 
               4              128 
  POU3F2 MUTATED POU3F2 WILD-TYPE 
               4              128 
[1] "FAM9A MUTATION ANALYSIS"
[1] 3
  FAM9A MUTATED FAM9A WILD-TYPE 
              6             126 
  FAM9A MUTATED FAM9A WILD-TYPE 
              6             126 
[1] "CSNK2A1 MUTATION ANALYSIS"
[1] 3
  CSNK2A1 MUTATED CSNK2A1 WILD-TYPE 
                4               128 
  CSNK2A1 MUTATED CSNK2A1 WILD-TYPE 
                4               128 
[1] "CAPN6 MUTATION ANALYSIS"
[1] 3
  CAPN6 MUTATED CAPN6 WILD-TYPE 
              7             125 
  CAPN6 MUTATED CAPN6 WILD-TYPE 
              7             125 
[1] "CHRM3 MUTATION ANALYSIS"
[1] 3
  CHRM3 MUTATED CHRM3 WILD-TYPE 
              6             126 
  CHRM3 MUTATED CHRM3 WILD-TYPE 
              6             126 
[1] "ELF3 MUTATION ANALYSIS"
[1] 3
  ELF3 MUTATED ELF3 WILD-TYPE 
             6            126 
  ELF3 MUTATED ELF3 WILD-TYPE 
             6            126 
[1] "ELL2 MUTATION ANALYSIS"
[1] 3
  ELL2 MUTATED ELL2 WILD-TYPE 
             8            124 
  ELL2 MUTATED ELL2 WILD-TYPE 
             8            124 
[1] "EPHA6 MUTATION ANALYSIS"
[1] 3
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             14             118 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             14             118 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             10             122 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             10             122 
[1] "TP53TG5 MUTATION ANALYSIS"
[1] 3
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
                4               128 
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
                4               128 
[1] "ZNF559 MUTATION ANALYSIS"
[1] 3
  ZNF559 MUTATED ZNF559 WILD-TYPE 
               7              125 
  ZNF559 MUTATED ZNF559 WILD-TYPE 
               7              125 
[1] "KRTAP4-1 MUTATION ANALYSIS"
[1] 3
  KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE 
                 3                129 
  KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE 
                 3                129 
[1] "OSGIN2 MUTATION ANALYSIS"
[1] 3
  OSGIN2 MUTATED OSGIN2 WILD-TYPE 
               6              126 
  OSGIN2 MUTATED OSGIN2 WILD-TYPE 
               6              126 
[1] "SMAD2 MUTATION ANALYSIS"
[1] 3
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              7             125 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              7             125 
[1] "ANAPC1 MUTATION ANALYSIS"
[1] 3
  ANAPC1 MUTATED ANAPC1 WILD-TYPE 
              12              120 
  ANAPC1 MUTATED ANAPC1 WILD-TYPE 
              12              120 
[1] "AUH MUTATION ANALYSIS"
[1] 3
  AUH MUTATED AUH WILD-TYPE 
            5           127 
  AUH MUTATED AUH WILD-TYPE 
            5           127 
[1] "EDIL3 MUTATION ANALYSIS"
[1] 3
  EDIL3 MUTATED EDIL3 WILD-TYPE 
              6             126 
  EDIL3 MUTATED EDIL3 WILD-TYPE 
              6             126 
[1] "OR4C13 MUTATION ANALYSIS"
[1] 3
  OR4C13 MUTATED OR4C13 WILD-TYPE 
               5              127 
  OR4C13 MUTATED OR4C13 WILD-TYPE 
               5              127 
[1] "OR4C16 MUTATION ANALYSIS"
[1] 3
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               9              123 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               9              123 
[1] "PRR11 MUTATION ANALYSIS"
[1] 3
  PRR11 MUTATED PRR11 WILD-TYPE 
              4             128 
  PRR11 MUTATED PRR11 WILD-TYPE 
              4             128 
[1] "AFAP1 MUTATION ANALYSIS"
[1] 3
  AFAP1 MUTATED AFAP1 WILD-TYPE 
              5             127 
  AFAP1 MUTATED AFAP1 WILD-TYPE 
              5             127 
[1] "LIN7A MUTATION ANALYSIS"
[1] 3
  LIN7A MUTATED LIN7A WILD-TYPE 
              6             126 
  LIN7A MUTATED LIN7A WILD-TYPE 
              6             126 
[1] "OR8B4 MUTATION ANALYSIS"
[1] 3
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              3             129 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              3             129 
[1] "PID1 MUTATION ANALYSIS"
[1] 3
  PID1 MUTATED PID1 WILD-TYPE 
             5            127 
  PID1 MUTATED PID1 WILD-TYPE 
             5            127 
[1] "AVP MUTATION ANALYSIS"
[1] 3
  AVP MUTATED AVP WILD-TYPE 
            3           129 
  AVP MUTATED AVP WILD-TYPE 
            3           129 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "HISTOLOGICALTYPE"                      
[10] "PATHOLOGICSPREAD(PT)"                  
[11] "PATHOLOGICSPREAD(PN)"                  
[12] "PATHOLOGICSPREAD(M)"                   
[13] "TUMORSTAGE"                            
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "NEOADJUVANTTHERAPY"                    
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 132 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4187 TCGA-BR-4188 
         171            3           NA           NA           NA           NA 
TCGA-BR-4190 TCGA-BR-4191 TCGA-BR-4194 TCGA-BR-4195 TCGA-BR-4199 TCGA-BR-4200 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4201 TCGA-BR-4253 TCGA-BR-4255 TCGA-BR-4256 TCGA-BR-4257 TCGA-BR-4259 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4261 TCGA-BR-4265 TCGA-BR-4267 TCGA-BR-4277 TCGA-BR-4278 TCGA-BR-4279 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4280 TCGA-BR-4281 TCGA-BR-4284 TCGA-BR-4291 TCGA-BR-4292 TCGA-BR-4294 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4298 TCGA-BR-4357 TCGA-BR-4361 TCGA-BR-4362 TCGA-BR-4363 TCGA-BR-4366 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4367 TCGA-BR-4368 TCGA-BR-4369 TCGA-BR-4370 TCGA-BR-4371 TCGA-BR-4375 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4376 TCGA-BR-6452 TCGA-BR-6453 TCGA-BR-6454 TCGA-BR-6455 TCGA-BR-6456 
          NA           29           NA           NA           43           NA 
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 
          41           41           25           19           19           52 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
          66           30           37           20           34           23 
TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
          20            8           25           21           11           15 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
           9            2           12          609           92          822 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
         485           31         1611          245         1644          122 
TCGA-CG-4441 TCGA-CG-4442 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
         426           NA          912         1431          580          366 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
         669           31          273          576          215          365 
TCGA-CG-4474 TCGA-CG-4475 TCGA-CG-4476 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
          31           NA           NA           31           31          211 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
          31           31           30          182           29         2131 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
         366          457          881          944         1980          122 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
        1674          641          243          263          109          138 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
         298          476          293          249          210           21 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
         181          201          126           51          111          143 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
         123           89          130           19          199           61 
Variable 1:'AGE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=70,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'PATHOLOGY.T':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.N':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'TUMOR.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                 "GENDER"              "HISTOLOGICAL.TYPE"  
[4] "PATHOLOGY.T"         "PATHOLOGY.N"         "PATHOLOGICSPREAD(M)"
[7] "TUMOR.STAGE"         "NEOADJUVANT.THERAPY"
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
18 32 33 21 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 132 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=44, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=6, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 4 46 46 15 
[1] "table(vv)"
vv
T1 T2 T3 T4 
 4 46 46 15 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
T1 T2 T3 T4 
 4 46 46 15 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
 4 46 46 15 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
35 47 20 12 
[1] "table(vv)"
vv
N0 N1 N2 N3 
35 47 20 12 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 N3 
35 47 20 12 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


N0 N1 N2 N3 
35 47 20 12 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 18  32  33  21 
[1] "table(vv)"
vv
  I  II III  IV 
 18  32  33  21 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 18  32  33  21 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 18  32  33  21 
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = ACVR2A MUTATION ANALYSIS
D1V1, survival
                  sevent
clus2               0  1
  ACVR2A MUTATED    3  4
  ACVR2A WILD-TYPE 68 10
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               7               78 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               4               10 
$`ACVR2A MUTATED`
TCGA-BR-6566 TCGA-BR-6852 TCGA-CG-4306 TCGA-CG-4465 TCGA-CG-5720 TCGA-CG-5726 
        0.62         0.26         1.02         8.98         0.99        28.96 
TCGA-F1-6874 
        2.01 

$`ACVR2A WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02        15.95        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         1.02         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 
        0.95        70.06        12.03        15.02        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        4.54         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 

  ACVR2A MUTATED ACVR2A WILD-TYPE 
            0.26             0.07 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           28.96            70.06 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
            1.02             4.09 
[1] "0.3 - 29.0 (1.0)" "0.1 - 70.1 (4.1)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-F1-6874 
  "ACVR2A MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-F1-6874 
  "ACVR2A MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-F1-6874 
  "ACVR2A MUTATED" 
[1] "hr=" "5.4"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED     10    7
  ACVR2A WILD-TYPE   43   72
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  FEMALE             10               43
  MALE                7               72
D1V4, multiclass
D1V5, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  T1              2                2
  T2              4               42
  T3              6               40
  T4              2               13
D1V6, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  N0              5               30
  N1              6               41
  N2              3               17
  N3              1               11
D1V7, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  M0             14              101
  M1              2               11
  MX              1                3
D1V8, multiclass
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  I                3               15
  II               3               29
  III              3               30
  IV               3               18
D1V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      0   17
  ACVR2A WILD-TYPE    8  107
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  NO               0                8
  YES             17              107

Clustering(2) Variable = CBWD1 MUTATION ANALYSIS
D2V1, survival
                 sevent
clus2              0  1
  CBWD1 MUTATED    5  3
  CBWD1 WILD-TYPE 66 11
  CBWD1 MUTATED CBWD1 WILD-TYPE 
              8              77 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
              3              11 
$`CBWD1 MUTATED`
TCGA-BR-6452 TCGA-BR-6852 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4460 TCGA-CG-5721 
        0.95         0.26        15.95         1.02        21.99         5.98 
TCGA-CG-5726 TCGA-F1-6177 
       28.96         6.54 

$`CBWD1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
        3.02        27.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 
       14.01        29.98        47.05        19.07        12.03         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        8.98        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        12.03        15.02        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         2.01 

  CBWD1 MUTATED CBWD1 WILD-TYPE 
           0.26            0.07 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
          28.96           70.06 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
           6.26            4.01 
[1] "0.3 - 29.0 (6.3)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CBWD1 MUTATED"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-F1-6874 
"CBWD1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CBWD1 MUTATED"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-F1-6874 
"CBWD1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CBWD1 MUTATED"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-F1-6874 
"CBWD1 WILD-TYPE" 
[1] "hr=" "1.9"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CBWD1 MUTATED      9    8
  CBWD1 WILD-TYPE   44   71
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  FEMALE             9              44
  MALE               8              71
D2V4, multiclass
D2V5, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  T1             3               1
  T2             2              44
  T3             4              42
  T4             4              11
D2V6, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  N0             5              30
  N1             8              39
  N2             2              18
  N3             0              12
D2V7, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  M0            14             101
  M1             2              11
  MX             1               3
D2V8, multiclass
     clus
vv    CBWD1 MUTATED CBWD1 WILD-TYPE
  I               3              15
  II              3              29
  III             2              31
  IV              4              17
D2V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CBWD1 MUTATED      0   17
  CBWD1 WILD-TYPE    8  107
     clus
vv    CBWD1 MUTATED CBWD1 WILD-TYPE
  NO              0               8
  YES            17             107

Clustering(3) Variable = DNAJC15 MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                0  1
  DNAJC15 MUTATED    1  1
  DNAJC15 WILD-TYPE 70 13
  DNAJC15 MUTATED DNAJC15 WILD-TYPE 
                2                83 
  DNAJC15 MUTATED DNAJC15 WILD-TYPE 
                1                13 
$`DNAJC15 MUTATED`
TCGA-BR-6852 TCGA-CG-5717 
        0.26         6.94 

$`DNAJC15 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 
        1.22         0.66         1.12         0.76         0.66         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 
        7.07        12.00         1.02         1.02         1.02         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  DNAJC15 MUTATED DNAJC15 WILD-TYPE 
             0.26              0.07 
  DNAJC15 MUTATED DNAJC15 WILD-TYPE 
             6.94             70.06 
  DNAJC15 MUTATED DNAJC15 WILD-TYPE 
             3.60              4.01 
[1] "0.3 - 6.9 (3.6)"  "0.1 - 70.1 (4.0)"
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"DNAJC15 WILD-TYPE"   "DNAJC15 MUTATED" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
  "DNAJC15 MUTATED" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-F1-6874 
"DNAJC15 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"DNAJC15 WILD-TYPE"   "DNAJC15 MUTATED" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
  "DNAJC15 MUTATED" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-F1-6874 
"DNAJC15 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"DNAJC15 WILD-TYPE"   "DNAJC15 MUTATED" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
  "DNAJC15 MUTATED" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-F1-6874 
"DNAJC15 WILD-TYPE" 
[1] "Remove cluster labels:" "DNAJC15 MUTATED"       
clus
  DNAJC15 MUTATED DNAJC15 WILD-TYPE 
                2                83 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6803        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5813 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443        TCGA-CG-4444 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460        TCGA-CG-4462 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469        TCGA-CG-4472 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716        TCGA-CG-5718 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725        TCGA-CG-5726 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-EQ-5647        TCGA-F1-6177        TCGA-F1-6874 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DNAJC15 MUTATED      2    1
  DNAJC15 WILD-TYPE   51   78
        clus
vv       DNAJC15 MUTATED DNAJC15 WILD-TYPE
  FEMALE               2                51
  MALE                 1                78
D3V4, multiclass
D3V5, multiclass
    clus
vv   DNAJC15 MUTATED DNAJC15 WILD-TYPE
  T1               0                 4
  T2               1                45
  T3               2                44
  T4               0                15
D3V6, multiclass
[1] "Remove cluster labels:" "DNAJC15 MUTATED"       
clus
  DNAJC15 MUTATED DNAJC15 WILD-TYPE 
                2               112 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-4183        TCGA-BR-4184 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-4188        TCGA-BR-4190        TCGA-BR-4191        TCGA-BR-4195 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-4199        TCGA-BR-4200        TCGA-BR-4253        TCGA-BR-4255 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-4256        TCGA-BR-4261        TCGA-BR-4267        TCGA-BR-4278 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-4279        TCGA-BR-4280        TCGA-BR-4281        TCGA-BR-4298 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-4361        TCGA-BR-4362        TCGA-BR-4367        TCGA-BR-4368 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-4376        TCGA-BR-6452        TCGA-BR-6453        TCGA-BR-6454 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457        TCGA-BR-6458 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6709        TCGA-BR-6710 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803        TCGA-CD-5798 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CD-5803        TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4442        TCGA-CG-4443        TCGA-CG-4444        TCGA-CG-4449 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4455        TCGA-CG-4460        TCGA-CG-4462        TCGA-CG-4465 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4466        TCGA-CG-4469        TCGA-CG-4472        TCGA-CG-4474 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4475        TCGA-CG-4476        TCGA-CG-4477        TCGA-CG-5716 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177        TCGA-F1-6874 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
D3V7, multiclass
    clus
vv   DNAJC15 MUTATED DNAJC15 WILD-TYPE
  M0               2               113
  M1               0                13
  MX               1                 3
D3V8, multiclass
[1] "Remove cluster labels:" "DNAJC15 MUTATED"       
clus
  DNAJC15 MUTATED DNAJC15 WILD-TYPE 
                2               102 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-4183        TCGA-BR-4184 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-4190        TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4267 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-4278        TCGA-BR-4279        TCGA-BR-4280        TCGA-BR-4298 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-4361        TCGA-BR-4368        TCGA-BR-4376        TCGA-BR-6452 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6453        TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-BR-6803        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5813 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4442        TCGA-CG-4443 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4475        TCGA-CG-4476 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-4477        TCGA-CG-5716        TCGA-CG-5718        TCGA-CG-5719 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5724        TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
       TCGA-F1-6177        TCGA-F1-6874 
"DNAJC15 WILD-TYPE" "DNAJC15 WILD-TYPE" 
D3V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DNAJC15 MUTATED      0    3
  DNAJC15 WILD-TYPE    8  121
     clus
vv    DNAJC15 MUTATED DNAJC15 WILD-TYPE
  NO                0                 8
  YES               3               121

Clustering(4) Variable = KRAS MUTATION ANALYSIS
D4V1, survival
                sevent
clus2             0  1
  KRAS MUTATED    6  0
  KRAS WILD-TYPE 65 14
  KRAS MUTATED KRAS WILD-TYPE 
             6             79 
  KRAS MUTATED KRAS WILD-TYPE 
             0             14 
$`KRAS MUTATED`
TCGA-BR-6705 TCGA-BR-6802 TCGA-CD-5798 TCGA-CG-5719 TCGA-CG-5727 TCGA-D7-6815 
        1.71         0.76         0.82         1.02        31.04         3.65 

$`KRAS WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         0.62         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5799 TCGA-CD-5800 
        0.66         1.12         0.66         0.26         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 
        1.02         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  KRAS MUTATED KRAS WILD-TYPE 
          0.76           0.07 
  KRAS MUTATED KRAS WILD-TYPE 
         31.04          70.06 
  KRAS MUTATED KRAS WILD-TYPE 
         1.365          4.140 
[1] "0.8 - 31.0 (1.4)" "0.1 - 70.1 (4.1)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F1-6874 
"KRAS WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F1-6874 
"KRAS WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F1-6874 
"KRAS WILD-TYPE" 
[1] "hr="     "7.3e+07"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     10    7
  KRAS WILD-TYPE   43   72
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           10             43
  MALE              7             72
D4V4, multiclass
D4V5, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            0              4
  T2            5             41
  T3            6             40
  T4            3             12
D4V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  N0            6             29
  N1            5             42
  N2            3             17
  N3            0             12
D4V7, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  M0           15            100
  M1            1             12
  MX            1              3
D4V8, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  I              2             16
  II             2             30
  III            7             26
  IV             2             19
D4V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      0   17
  KRAS WILD-TYPE    8  107
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  NO             0              8
  YES           17            107

Clustering(5) Variable = RPL22 MUTATION ANALYSIS
D5V1, survival
                 sevent
clus2              0  1
  RPL22 MUTATED    1  2
  RPL22 WILD-TYPE 70 12
  RPL22 MUTATED RPL22 WILD-TYPE 
              3              82 
  RPL22 MUTATED RPL22 WILD-TYPE 
              2              12 
$`RPL22 MUTATED`
TCGA-CG-4460 TCGA-CG-5726 TCGA-F1-6177 
       21.99        28.96         6.54 

$`RPL22 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       47.05        19.07        12.03         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        2.93         4.27         0.62         2.01 

  RPL22 MUTATED RPL22 WILD-TYPE 
           6.54            0.07 
  RPL22 MUTATED RPL22 WILD-TYPE 
          28.96           70.06 
  RPL22 MUTATED RPL22 WILD-TYPE 
          21.99            3.83 
[1] "6.5 - 29.0 (22.0)" "0.1 - 70.1 (3.8)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RPL22 WILD-TYPE"   "RPL22 MUTATED" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-F1-6874 
"RPL22 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RPL22 WILD-TYPE"   "RPL22 MUTATED" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-F1-6874 
"RPL22 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RPL22 WILD-TYPE"   "RPL22 MUTATED" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-F1-6874 
"RPL22 WILD-TYPE" 
[1] "hr=" "1.7"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPL22 MUTATED      5    5
  RPL22 WILD-TYPE   48   74
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  FEMALE             5              48
  MALE               5              74
D5V4, multiclass
D5V5, multiclass
    clus
vv   RPL22 MUTATED RPL22 WILD-TYPE
  T1             2               2
  T2             2              44
  T3             3              43
  T4             1              14
D5V6, multiclass
    clus
vv   RPL22 MUTATED RPL22 WILD-TYPE
  N0             2              33
  N1             6              41
  N2             0              20
  N3             0              12
D5V7, multiclass
    clus
vv   RPL22 MUTATED RPL22 WILD-TYPE
  M0             6             109
  M1             1              12
  MX             3               1
D5V8, multiclass
     clus
vv    RPL22 MUTATED RPL22 WILD-TYPE
  I               3              15
  II              0              32
  III             3              30
  IV              1              20
D5V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPL22 MUTATED      0   10
  RPL22 WILD-TYPE    8  114
     clus
vv    RPL22 MUTATED RPL22 WILD-TYPE
  NO              0               8
  YES            10             114

Clustering(6) Variable = SFRS12IP1 MUTATION ANALYSIS
D6V1, survival
                     sevent
clus2                  0  1
  SFRS12IP1 MUTATED    1  1
  SFRS12IP1 WILD-TYPE 70 13
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
                  2                  83 
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
                  1                  13 
$`SFRS12IP1 MUTATED`
TCGA-BR-6452 TCGA-CG-5726 
        0.95        28.96 

$`SFRS12IP1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
               0.95                0.07 
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
              28.96               70.06 
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
             14.955               4.010 
[1] "0.9 - 29.0 (15.0)" "0.1 - 70.1 (4.0)" 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE"   "SFRS12IP1 MUTATED" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4460          TCGA-CG-4462          TCGA-CG-4465 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4466          TCGA-CG-4469          TCGA-CG-4472 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4474          TCGA-CG-4477          TCGA-CG-5716 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
  "SFRS12IP1 MUTATED" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F1-6874 
"SFRS12IP1 WILD-TYPE" 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE"   "SFRS12IP1 MUTATED" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4460          TCGA-CG-4462          TCGA-CG-4465 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4466          TCGA-CG-4469          TCGA-CG-4472 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4474          TCGA-CG-4477          TCGA-CG-5716 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
  "SFRS12IP1 MUTATED" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F1-6874 
"SFRS12IP1 WILD-TYPE" 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE"   "SFRS12IP1 MUTATED" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4460          TCGA-CG-4462          TCGA-CG-4465 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4466          TCGA-CG-4469          TCGA-CG-4472 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4474          TCGA-CG-4477          TCGA-CG-5716 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
  "SFRS12IP1 MUTATED" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F1-6874 
"SFRS12IP1 WILD-TYPE" 
[1] "Remove cluster labels:" "SFRS12IP1 MUTATED"     
clus
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
                  2                  83 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6455 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6457          TCGA-BR-6458          TCGA-BR-6564 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6565          TCGA-BR-6566          TCGA-BR-6705 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6706          TCGA-BR-6707          TCGA-BR-6709 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6710          TCGA-BR-6801          TCGA-BR-6802 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-BR-6803          TCGA-BR-6852          TCGA-CD-5798 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CD-5799          TCGA-CD-5800          TCGA-CD-5801 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CD-5802          TCGA-CD-5803          TCGA-CD-5813 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4300          TCGA-CG-4301          TCGA-CG-4304 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4305          TCGA-CG-4306          TCGA-CG-4436 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4437          TCGA-CG-4438          TCGA-CG-4440 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4441          TCGA-CG-4443          TCGA-CG-4444 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4449          TCGA-CG-4455          TCGA-CG-4460 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4462          TCGA-CG-4465          TCGA-CG-4466 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4469          TCGA-CG-4472          TCGA-CG-4474 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-4477          TCGA-CG-5716          TCGA-CG-5717 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5718          TCGA-CG-5719          TCGA-CG-5720 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5721          TCGA-CG-5722          TCGA-CG-5723 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5724          TCGA-CG-5725          TCGA-CG-5727 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5728          TCGA-CG-5730          TCGA-CG-5732 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CG-5733          TCGA-CG-5734          TCGA-D7-5577 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-5578          TCGA-D7-5579          TCGA-D7-6518 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6519          TCGA-D7-6520          TCGA-D7-6521 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6522          TCGA-D7-6524          TCGA-D7-6525 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6526          TCGA-D7-6527          TCGA-D7-6528 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6815          TCGA-D7-6817          TCGA-D7-6818 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D7-6820          TCGA-D7-6822          TCGA-EQ-5647 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F1-6177          TCGA-F1-6874 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
D6V2, continuous
D6V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SFRS12IP1 MUTATED      1    4
  SFRS12IP1 WILD-TYPE   52   75
        clus
vv       SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  FEMALE                 1                  52
  MALE                   4                  75
D6V4, multiclass
D6V5, multiclass
    clus
vv   SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  T1                 1                   3
  T2                 1                  45
  T3                 2                  44
  T4                 0                  15
D6V6, multiclass
    clus
vv   SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  N0                 3                  32
  N1                 2                  45
  N2                 0                  20
  N3                 0                  12
D6V7, multiclass
    clus
vv   SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  M0                 5                 110
  M1                 0                  13
  MX                 0                   4
D6V8, multiclass
     clus
vv    SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  I                   2                  16
  II                  1                  31
  III                 1                  32
  IV                  0                  21
D6V9, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SFRS12IP1 MUTATED      0    5
  SFRS12IP1 WILD-TYPE    8  119
     clus
vv    SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  NO                  0                   8
  YES                 5                 119

Clustering(7) Variable = SMAP1 MUTATION ANALYSIS
D7V1, survival
                 sevent
clus2              0  1
  SMAP1 MUTATED    1  1
  SMAP1 WILD-TYPE 70 13
  SMAP1 MUTATED SMAP1 WILD-TYPE 
              2              83 
  SMAP1 MUTATED SMAP1 WILD-TYPE 
              1              13 
$`SMAP1 MUTATED`
TCGA-CG-5726 TCGA-CG-5728 
       28.96        65.10 

$`SMAP1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
       70.06        12.03        15.02        31.04         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  SMAP1 MUTATED SMAP1 WILD-TYPE 
          28.96            0.07 
  SMAP1 MUTATED SMAP1 WILD-TYPE 
          65.10           70.06 
  SMAP1 MUTATED SMAP1 WILD-TYPE 
          47.03            4.01 
[1] "29.0 - 65.1 (47.0)" "0.1 - 70.1 (4.0)"  
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAP1 WILD-TYPE"   "SMAP1 MUTATED" "SMAP1 WILD-TYPE"   "SMAP1 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F1-6874 
"SMAP1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAP1 WILD-TYPE"   "SMAP1 MUTATED" "SMAP1 WILD-TYPE"   "SMAP1 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F1-6874 
"SMAP1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAP1 WILD-TYPE"   "SMAP1 MUTATED" "SMAP1 WILD-TYPE"   "SMAP1 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F1-6874 
"SMAP1 WILD-TYPE" 
[1] "Remove cluster labels:" "SMAP1 MUTATED"         
clus
  SMAP1 MUTATED SMAP1 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5727      TCGA-CG-5730      TCGA-CG-5732 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
D7V2, continuous
D7V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAP1 MUTATED      3    2
  SMAP1 WILD-TYPE   50   77
        clus
vv       SMAP1 MUTATED SMAP1 WILD-TYPE
  FEMALE             3              50
  MALE               2              77
D7V4, multiclass
D7V5, multiclass
    clus
vv   SMAP1 MUTATED SMAP1 WILD-TYPE
  T1             1               3
  T2             1              45
  T3             0              46
  T4             1              14
D7V6, multiclass
    clus
vv   SMAP1 MUTATED SMAP1 WILD-TYPE
  N0             3              32
  N1             2              45
  N2             0              20
  N3             0              12
D7V7, multiclass
    clus
vv   SMAP1 MUTATED SMAP1 WILD-TYPE
  M0             5             110
  M1             0              13
  MX             0               4
D7V8, multiclass
     clus
vv    SMAP1 MUTATED SMAP1 WILD-TYPE
  I               2              16
  II              0              32
  III             1              32
  IV              0              21
D7V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAP1 MUTATED      0    5
  SMAP1 WILD-TYPE    8  119
     clus
vv    SMAP1 MUTATED SMAP1 WILD-TYPE
  NO              0               8
  YES             5             119

Clustering(8) Variable = TP53 MUTATION ANALYSIS
D8V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   36  5
  TP53 WILD-TYPE 35  9
  TP53 MUTATED TP53 WILD-TYPE 
            41             44 
  TP53 MUTATED TP53 WILD-TYPE 
             5              9 
$`TP53 MUTATED`
TCGA-B7-5818 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6803 TCGA-BR-6852 
        0.10         1.35         1.35         0.62         0.66         0.26 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4436 TCGA-CG-4438 
        0.69         0.36         0.39        20.02        52.96        54.05 
TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 
        4.01        47.05        19.07        21.99        18.94         7.07 
TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5726 
       12.00         6.94         1.02         5.98        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 
       31.04         4.01        55.04         3.58         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        8.19         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-F1-6874 
        4.70         4.04         2.93         4.27         2.01 

$`TP53 WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 
        5.62         0.95         1.41         0.82         0.62         1.71 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        2.17         0.99         1.22         0.66         1.12         0.76 
TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 
        0.82         0.49         0.30         0.07         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 
       15.95         1.02         8.05        14.01        29.98        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5719 
        1.02         8.98         1.02         1.02         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5728 TCGA-CG-5733 
        0.99         0.95        12.03        15.02        65.10        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6522 TCGA-D7-6524 
        7.99         8.65         4.54        15.65         6.90         0.69 
TCGA-EQ-5647 TCGA-F1-6177 
        0.62         6.54 

  TP53 MUTATED TP53 WILD-TYPE 
          0.10           0.07 
  TP53 MUTATED TP53 WILD-TYPE 
         70.06          65.10 
  TP53 MUTATED TP53 WILD-TYPE 
         4.700          1.315 
[1] "0.1 - 70.1 (4.7)" "0.1 - 65.1 (1.3)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F1-6874 
  "TP53 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F1-6874 
  "TP53 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F1-6874 
  "TP53 MUTATED" 
[1] "hr=" "2.6"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     21   40
  TP53 WILD-TYPE   32   39
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           21             32
  MALE             40             39
D8V4, multiclass
D8V5, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1            2              2
  T2           23             23
  T3           21             25
  T4            5             10
D8V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           15             20
  N1           24             23
  N2            9             11
  N3            6              6
D8V7, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0           55             60
  M1            3             10
  MX            3              1
D8V8, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  I              7             11
  II            17             15
  III           14             19
  IV            10             11
D8V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      5   56
  TP53 WILD-TYPE    3   68
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             5              3
  YES           56             68

Clustering(9) Variable = TRIM48 MUTATION ANALYSIS
D9V1, survival
                  sevent
clus2               0  1
  TRIM48 MUTATED    1  3
  TRIM48 WILD-TYPE 70 11
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               4               81 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               3               11 
$`TRIM48 MUTATED`
TCGA-CG-4306 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5733 
        1.02        70.06        28.96        21.07 

$`TRIM48 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 
        0.39        20.02         3.02        27.02        15.95        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 
        1.02         1.02         0.99         5.98         0.95        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 
       15.02        31.04        65.10         4.01        55.04         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  TRIM48 MUTATED TRIM48 WILD-TYPE 
            1.02             0.07 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
           70.06            65.10 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
          25.015            4.010 
[1] "1.0 - 70.1 (25.0)" "0.1 - 65.1 (4.0)" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-F1-6874 
"TRIM48 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-F1-6874 
"TRIM48 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-F1-6874 
"TRIM48 WILD-TYPE" 
[1] "hr=" "1.9"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      7    7
  TRIM48 WILD-TYPE   46   72
        clus
vv       TRIM48 MUTATED TRIM48 WILD-TYPE
  FEMALE              7               46
  MALE                7               72
D9V4, multiclass
D9V5, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  T1              2                2
  T2              3               43
  T3              5               41
  T4              1               14
D9V6, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  N0              2               33
  N1              8               39
  N2              2               18
  N3              0               12
D9V7, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  M0             11              104
  M1              1               12
  MX              2                2
D9V8, multiclass
     clus
vv    TRIM48 MUTATED TRIM48 WILD-TYPE
  I                1               17
  II               1               31
  III              6               27
  IV               1               20
D9V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      0   14
  TRIM48 WILD-TYPE    8  110
     clus
vv    TRIM48 MUTATED TRIM48 WILD-TYPE
  NO               0                8
  YES             14              110

Clustering(10) Variable = ZNF48 MUTATION ANALYSIS
D10V1, survival
                 sevent
clus2              0  1
  ZNF48 MUTATED    1  0
  ZNF48 WILD-TYPE 70 14
  ZNF48 MUTATED ZNF48 WILD-TYPE 
              1              84 
  ZNF48 MUTATED ZNF48 WILD-TYPE 
              0              14 
$`ZNF48 MUTATED`
TCGA-BR-6452 
        0.95 

$`ZNF48 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 

  ZNF48 MUTATED ZNF48 WILD-TYPE 
           0.95            0.07 
  ZNF48 MUTATED ZNF48 WILD-TYPE 
           0.95           70.06 
  ZNF48 MUTATED ZNF48 WILD-TYPE 
          0.950           4.025 
[1] "0.9 - 0.9 (0.9)"  "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE"   "ZNF48 MUTATED" "ZNF48 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-F1-6874 
"ZNF48 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE"   "ZNF48 MUTATED" "ZNF48 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-F1-6874 
"ZNF48 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE"   "ZNF48 MUTATED" "ZNF48 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-F1-6874 
"ZNF48 WILD-TYPE" 
[1] "Remove cluster labels:" "ZNF48 MUTATED"         
clus
  ZNF48 MUTATED ZNF48 WILD-TYPE 
              1              84 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6455      TCGA-BR-6457 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
D10V2, continuous
D10V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF48 MUTATED      2    1
  ZNF48 WILD-TYPE   51   78
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  FEMALE             2              51
  MALE               1              78
D10V4, multiclass
D10V5, multiclass
    clus
vv   ZNF48 MUTATED ZNF48 WILD-TYPE
  T1             1               3
  T2             1              45
  T3             1              45
  T4             0              15
D10V6, multiclass
[1] "Remove cluster labels:" "ZNF48 MUTATED"         
clus
  ZNF48 MUTATED ZNF48 WILD-TYPE 
              2             112 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-4188      TCGA-BR-4190      TCGA-BR-4191      TCGA-BR-4195 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-4199      TCGA-BR-4200      TCGA-BR-4253      TCGA-BR-4255 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-4256      TCGA-BR-4261      TCGA-BR-4267      TCGA-BR-4278 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4281      TCGA-BR-4298 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-4361      TCGA-BR-4362      TCGA-BR-4367      TCGA-BR-4368 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-4376      TCGA-BR-6453      TCGA-BR-6454      TCGA-BR-6455 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6707      TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4460      TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4475 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
D10V7, multiclass
    clus
vv   ZNF48 MUTATED ZNF48 WILD-TYPE
  M0             3             112
  M1             0              13
  MX             0               4
D10V8, multiclass
[1] "Remove cluster labels:" "ZNF48 MUTATED"         
clus
  ZNF48 MUTATED ZNF48 WILD-TYPE 
              2             102 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-4190      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4267 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-4278      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4298 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-4361      TCGA-BR-4368      TCGA-BR-4376      TCGA-BR-6453 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874 
"ZNF48 WILD-TYPE" "ZNF48 WILD-TYPE" 
D10V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF48 MUTATED      0    3
  ZNF48 WILD-TYPE    8  121
     clus
vv    ZNF48 MUTATED ZNF48 WILD-TYPE
  NO              0               8
  YES             3             121

Clustering(11) Variable = PGM5 MUTATION ANALYSIS
D11V1, survival
                sevent
clus2             0  1
  PGM5 MUTATED    6  3
  PGM5 WILD-TYPE 65 11
  PGM5 MUTATED PGM5 WILD-TYPE 
             9             76 
  PGM5 MUTATED PGM5 WILD-TYPE 
             3             11 
$`PGM5 MUTATED`
TCGA-BR-6452 TCGA-CG-4305 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-5726 TCGA-CG-5728 
        0.95        15.95        21.99         1.02        28.96        65.10 
TCGA-CG-5733 TCGA-D7-6521 TCGA-F1-6177 
       21.07         8.19         6.54 

$`PGM5 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
       20.02         3.02        27.02         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       12.03         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 
        5.98         0.95        70.06        12.03        15.02        31.04 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
        4.01        55.04         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        9.80        15.65         9.63         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        2.93         4.27         0.62         2.01 

  PGM5 MUTATED PGM5 WILD-TYPE 
          0.95           0.07 
  PGM5 MUTATED PGM5 WILD-TYPE 
         65.10          70.06 
  PGM5 MUTATED PGM5 WILD-TYPE 
        15.950          3.615 
[1] "0.9 - 65.1 (15.9)" "0.1 - 70.1 (3.6)" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-F1-6874 
"PGM5 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-F1-6874 
"PGM5 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-F1-6874 
"PGM5 WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PGM5 MUTATED     12    6
  PGM5 WILD-TYPE   41   73
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  FEMALE           12             41
  MALE              6             73
D11V4, multiclass
D11V5, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  T1            3              1
  T2            6             40
  T3            3             43
  T4            3             12
D11V6, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  N0            5             30
  N1            4             43
  N2            4             16
  N3            1             11
D11V7, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  M0           15            100
  M1            2             11
  MX            1              3
D11V8, multiclass
     clus
vv    PGM5 MUTATED PGM5 WILD-TYPE
  I              4             14
  II             2             30
  III            4             29
  IV             3             18
D11V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PGM5 MUTATED      1   17
  PGM5 WILD-TYPE    7  107
     clus
vv    PGM5 MUTATED PGM5 WILD-TYPE
  NO             1              7
  YES           17            107

Clustering(12) Variable = ARID1A MUTATION ANALYSIS
D12V1, survival
                  sevent
clus2               0  1
  ARID1A MUTATED   11  2
  ARID1A WILD-TYPE 60 12
  ARID1A MUTATED ARID1A WILD-TYPE 
              13               72 
  ARID1A MUTATED ARID1A WILD-TYPE 
               2               12 
$`ARID1A MUTATED`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6707 TCGA-BR-6802 
        5.62         0.10         0.95         1.41         0.99         0.76 
TCGA-CD-5803 TCGA-CG-4465 TCGA-CG-4469 TCGA-D7-5577 TCGA-D7-6521 TCGA-D7-6524 
        0.07         8.98         7.07         8.65         8.19         0.69 
TCGA-F1-6177 
        6.54 

$`ARID1A WILD-TYPE`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 
        1.35         1.35         0.82         0.62         0.62         1.71 
TCGA-BR-6706 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 
        2.17         1.22         0.66         1.12         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5813 
        0.82         0.69         0.36         0.49         0.30         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4472 
       19.07        12.03        21.99         1.02        18.94        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        7.99         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        6.90         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        4.70         4.04         2.93         4.27         0.62         2.01 

  ARID1A MUTATED ARID1A WILD-TYPE 
            0.07             0.26 
  ARID1A MUTATED ARID1A WILD-TYPE 
            8.98            70.06 
  ARID1A MUTATED ARID1A WILD-TYPE 
           1.410            4.025 
[1] "0.1 - 9.0 (1.4)"  "0.3 - 70.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "ARID1A MUTATED"   "ARID1A MUTATED"   "ARID1A MUTATED"   "ARID1A MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-F1-6874 
"ARID1A WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "ARID1A MUTATED"   "ARID1A MUTATED"   "ARID1A MUTATED"   "ARID1A MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-F1-6874 
"ARID1A WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "ARID1A MUTATED"   "ARID1A MUTATED"   "ARID1A MUTATED"   "ARID1A MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-F1-6874 
"ARID1A WILD-TYPE" 
[1] "hr=" "2.6"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     13   13
  ARID1A WILD-TYPE   40   66
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE             13               40
  MALE               13               66
D12V4, multiclass
D12V5, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  T1              2                2
  T2              6               40
  T3             12               34
  T4              3               12
D12V6, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  N0              7               28
  N1             11               36
  N2              1               19
  N3              3                9
D12V7, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  M0             22               93
  M1              1               12
  MX              3                1
D12V8, multiclass
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  I                3               15
  II               4               28
  III             11               22
  IV               2               19
D12V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      2   24
  ARID1A WILD-TYPE    6  100
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  NO               2                6
  YES             24              100

Clustering(13) Variable = RHOA MUTATION ANALYSIS
D13V1, survival
                sevent
clus2             0  1
  RHOA MUTATED    4  2
  RHOA WILD-TYPE 67 12
  RHOA MUTATED RHOA WILD-TYPE 
             6             79 
  RHOA MUTATED RHOA WILD-TYPE 
             2             12 
$`RHOA MUTATED`
TCGA-BR-6802 TCGA-CG-4465 TCGA-CG-5720 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        0.76         8.98         0.99         9.63         8.19         6.90 

$`RHOA WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        1.22         0.66         1.12         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 
       19.07        12.03        21.99         1.02        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        1.02         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  RHOA MUTATED RHOA WILD-TYPE 
          0.76           0.07 
  RHOA MUTATED RHOA WILD-TYPE 
          9.63          70.06 
  RHOA MUTATED RHOA WILD-TYPE 
         7.545          4.010 
[1] "0.8 - 9.6 (7.5)"  "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RHOA WILD-TYPE"   "RHOA MUTATED"   "RHOA MUTATED"   "RHOA MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-F1-6874 
"RHOA WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RHOA WILD-TYPE"   "RHOA MUTATED"   "RHOA MUTATED"   "RHOA MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-F1-6874 
"RHOA WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RHOA WILD-TYPE"   "RHOA MUTATED"   "RHOA MUTATED"   "RHOA MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-F1-6874 
"RHOA WILD-TYPE" 
[1] "hr=" "3.6"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      2    5
  RHOA WILD-TYPE   51   74
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  FEMALE            2             51
  MALE              5             74
D13V4, multiclass
D13V5, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  T1            0              4
  T2            4             42
  T3            1             45
  T4            1             14
D13V6, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  N0            2             33
  N1            2             45
  N2            2             18
  N3            1             11
D13V7, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  M0            6            109
  M1            1             12
  MX            0              4
D13V8, multiclass
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  I              2             16
  II             0             32
  III            3             30
  IV             1             20
D13V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      1    6
  RHOA WILD-TYPE    7  118
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  NO             1              7
  YES            6            118

Clustering(14) Variable = PIK3CA MUTATION ANALYSIS
D14V1, survival
                  sevent
clus2               0  1
  PIK3CA MUTATED   18  1
  PIK3CA WILD-TYPE 53 13
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              19               66 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               1               13 
$`PIK3CA MUTATED`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6706 TCGA-BR-6707 
        5.62         0.10         0.95         1.41         2.17         0.99 
TCGA-BR-6802 TCGA-BR-6852 TCGA-CD-5801 TCGA-CG-4305 TCGA-CG-4474 TCGA-CG-5721 
        0.76         0.26         0.49        15.95         1.02         5.98 
TCGA-CG-5722 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6815 
        0.95        65.10        21.07         8.65         3.58         3.65 
TCGA-F1-6177 
        6.54 

$`PIK3CA WILD-TYPE`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 
        1.35         1.35         0.82         0.62         0.62         1.71 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        1.22         0.66         1.12         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.36         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       27.02         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5723 
        1.02         6.94         1.02         1.02         0.99        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        28.96        31.04         4.01        55.04 
TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        7.99         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        4.70         4.04         2.93         4.27         0.62         2.01 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.10             0.07 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           65.10            70.06 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           2.170            4.205 
[1] "0.1 - 65.1 (2.2)" "0.1 - 70.1 (4.2)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-F1-6874 
"PIK3CA WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-F1-6874 
"PIK3CA WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-F1-6874 
"PIK3CA WILD-TYPE" 
[1] "hr=" "2.3"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     12   13
  PIK3CA WILD-TYPE   41   66
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE             12               41
  MALE               13               66
D14V4, multiclass
D14V5, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              1                3
  T2              8               38
  T3             12               34
  T4              4               11
D14V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0              9               26
  N1              9               38
  N2              5               15
  N3              1               11
D14V7, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  M0             22               93
  M1              2               11
  MX              1                3
D14V8, multiclass
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  I                4               14
  II               6               26
  III             11               22
  IV               3               18
D14V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      1   24
  PIK3CA WILD-TYPE    7  100
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  NO               1                7
  YES             24              100

Clustering(15) Variable = INO80E MUTATION ANALYSIS
D15V1, survival
                  sevent
clus2               0  1
  INO80E MUTATED    2  1
  INO80E WILD-TYPE 69 13
  INO80E MUTATED INO80E WILD-TYPE 
               3               82 
  INO80E MUTATED INO80E WILD-TYPE 
               1               13 
$`INO80E MUTATED`
TCGA-CG-4460 TCGA-CG-5721 TCGA-F1-6177 
       21.99         5.98         6.54 

$`INO80E WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       47.05        19.07        12.03         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         0.99         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        2.93         4.27         0.62         2.01 

  INO80E MUTATED INO80E WILD-TYPE 
            5.98             0.07 
  INO80E MUTATED INO80E WILD-TYPE 
           21.99            70.06 
  INO80E MUTATED INO80E WILD-TYPE 
            6.54             3.83 
[1] "6.0 - 22.0 (6.5)" "0.1 - 70.1 (3.8)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE"   "INO80E MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "INO80E MUTATED" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE"   "INO80E MUTATED" 
      TCGA-F1-6874 
"INO80E WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE"   "INO80E MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "INO80E MUTATED" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE"   "INO80E MUTATED" 
      TCGA-F1-6874 
"INO80E WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE"   "INO80E MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "INO80E MUTATED" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE"   "INO80E MUTATED" 
      TCGA-F1-6874 
"INO80E WILD-TYPE" 
[1] "hr=" "1.5"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  INO80E MUTATED      6    3
  INO80E WILD-TYPE   47   76
        clus
vv       INO80E MUTATED INO80E WILD-TYPE
  FEMALE              6               47
  MALE                3               76
D15V4, multiclass
D15V5, multiclass
    clus
vv   INO80E MUTATED INO80E WILD-TYPE
  T1              1                3
  T2              1               45
  T3              0               46
  T4              4               11
D15V6, multiclass
    clus
vv   INO80E MUTATED INO80E WILD-TYPE
  N0              1               34
  N1              7               40
  N2              1               19
  N3              0               12
D15V7, multiclass
    clus
vv   INO80E MUTATED INO80E WILD-TYPE
  M0              7              108
  M1              1               12
  MX              1                3
D15V8, multiclass
     clus
vv    INO80E MUTATED INO80E WILD-TYPE
  I                1               17
  II               0               32
  III              2               31
  IV               3               18
D15V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  INO80E MUTATED      0    9
  INO80E WILD-TYPE    8  115
     clus
vv    INO80E MUTATED INO80E WILD-TYPE
  NO               0                8
  YES              9              115

Clustering(16) Variable = FGF22 MUTATION ANALYSIS
D16V1, survival
                 sevent
clus2              0  1
  FGF22 MUTATED    1  1
  FGF22 WILD-TYPE 70 13
  FGF22 MUTATED FGF22 WILD-TYPE 
              2              83 
  FGF22 MUTATED FGF22 WILD-TYPE 
              1              13 
$`FGF22 MUTATED`
TCGA-BR-6452 TCGA-CG-4306 
        0.95         1.02 

$`FGF22 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 
       20.02         3.02        27.02        15.95        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  FGF22 MUTATED FGF22 WILD-TYPE 
           0.95            0.07 
  FGF22 MUTATED FGF22 WILD-TYPE 
           1.02           70.06 
  FGF22 MUTATED FGF22 WILD-TYPE 
          0.985           4.040 
[1] "0.9 - 1.0 (1.0)"  "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE"   "FGF22 MUTATED" "FGF22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FGF22 WILD-TYPE"   "FGF22 MUTATED" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-F1-6874 
"FGF22 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE"   "FGF22 MUTATED" "FGF22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FGF22 WILD-TYPE"   "FGF22 MUTATED" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-F1-6874 
"FGF22 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE"   "FGF22 MUTATED" "FGF22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FGF22 WILD-TYPE"   "FGF22 MUTATED" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-F1-6874 
"FGF22 WILD-TYPE" 
[1] "Remove cluster labels:" "FGF22 MUTATED"         
clus
  FGF22 MUTATED FGF22 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6455      TCGA-BR-6457 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462      TCGA-CG-4465 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472      TCGA-CG-4474 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
D16V2, continuous
D16V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGF22 MUTATED      2    2
  FGF22 WILD-TYPE   51   77
        clus
vv       FGF22 MUTATED FGF22 WILD-TYPE
  FEMALE             2              51
  MALE               2              77
D16V4, multiclass
D16V5, multiclass
    clus
vv   FGF22 MUTATED FGF22 WILD-TYPE
  T1             0               4
  T2             0              46
  T3             3              43
  T4             0              15
D16V6, multiclass
    clus
vv   FGF22 MUTATED FGF22 WILD-TYPE
  N0             1              34
  N1             1              46
  N2             1              19
  N3             0              12
D16V7, multiclass
    clus
vv   FGF22 MUTATED FGF22 WILD-TYPE
  M0             3             112
  M1             1              12
  MX             0               4
D16V8, multiclass
     clus
vv    FGF22 MUTATED FGF22 WILD-TYPE
  I               0              18
  II              1              31
  III             1              32
  IV              1              20
D16V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGF22 MUTATED      0    4
  FGF22 WILD-TYPE    8  120
     clus
vv    FGF22 MUTATED FGF22 WILD-TYPE
  NO              0               8
  YES             4             120

Clustering(17) Variable = OR8H3 MUTATION ANALYSIS
D17V1, survival
                 sevent
clus2              0  1
  OR8H3 MUTATED    8  2
  OR8H3 WILD-TYPE 63 12
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             10              75 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
              2              12 
$`OR8H3 MUTATED`
TCGA-B7-5818 TCGA-BR-6452 TCGA-CG-4436 TCGA-CG-4444 TCGA-CG-4469 TCGA-CG-5721 
        0.10         0.95        52.96        47.05         7.07         5.98 
TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5578 TCGA-D7-6525 
       65.10        21.07         3.58         5.95 

$`OR8H3 WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        5.62         1.41         1.35         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
        1.12         0.76         0.66         0.26         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02        15.95         1.02         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
        4.01        14.01        29.98        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98        18.94        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 
       70.06        12.03        15.02        28.96        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
       55.04         7.99         8.65         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6527 
        9.63         8.19         6.90         0.69         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  OR8H3 MUTATED OR8H3 WILD-TYPE 
           0.10            0.07 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
          65.10           70.06 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
          6.525           3.650 
[1] "0.1 - 65.1 (6.5)" "0.1 - 70.1 (3.6)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-F1-6874 
"OR8H3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-F1-6874 
"OR8H3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-F1-6874 
"OR8H3 WILD-TYPE" 
[1] "hr=" "1.5"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H3 MUTATED      3    7
  OR8H3 WILD-TYPE   50   72
        clus
vv       OR8H3 MUTATED OR8H3 WILD-TYPE
  FEMALE             3              50
  MALE               7              72
D17V4, multiclass
D17V5, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  T1             0               4
  T2             6              40
  T3             3              43
  T4             1              14
D17V6, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  N0             4              31
  N1             1              46
  N2             4              16
  N3             1              11
D17V7, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  M0            10             105
  M1             0              13
  MX             0               4
D17V8, multiclass
     clus
vv    OR8H3 MUTATED OR8H3 WILD-TYPE
  I               3              15
  II              2              30
  III             3              30
  IV              2              19
D17V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H3 MUTATED      1    9
  OR8H3 WILD-TYPE    7  115
     clus
vv    OR8H3 MUTATED OR8H3 WILD-TYPE
  NO              1               7
  YES             9             115

Clustering(18) Variable = ZNF804B MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                0  1
  ZNF804B MUTATED   10  3
  ZNF804B WILD-TYPE 61 11
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               13                72 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
                3                11 
$`ZNF804B MUTATED`
TCGA-BR-6452 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 
        0.95         3.02        15.95        52.96         8.05         4.01 
TCGA-CG-4469 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5728 TCGA-D7-6527 
        7.07         5.98        70.06        12.03        65.10         4.14 
TCGA-D7-6822 
        4.27 

$`ZNF804B WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 
       20.02        27.02         1.02        54.05        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
       18.94        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5725 TCGA-CG-5726 
        1.02         1.02         0.99         0.95        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 
        6.90         0.69         5.95         6.61         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.70         4.04         2.93         0.62         6.54         2.01 

  ZNF804B MUTATED ZNF804B WILD-TYPE 
             0.95              0.07 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
            70.06             55.04 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
             7.07              2.55 
[1] "0.9 - 70.1 (7.1)" "0.1 - 55.0 (2.5)"
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-F1-6874 
"ZNF804B WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-F1-6874 
"ZNF804B WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-F1-6874 
"ZNF804B WILD-TYPE" 
[1] "hr=" "1.1"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804B MUTATED      7   14
  ZNF804B WILD-TYPE   46   65
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  FEMALE               7                46
  MALE                14                65
D18V4, multiclass
D18V5, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  T1               0                 4
  T2               7                39
  T3               6                40
  T4               2                13
D18V6, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  N0               5                30
  N1              10                37
  N2               0                20
  N3               3                 9
D18V7, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  M0              17                98
  M1               3                10
  MX               1                 3
D18V8, multiclass
     clus
vv    ZNF804B MUTATED ZNF804B WILD-TYPE
  I                 3                15
  II                6                26
  III               0                33
  IV                5                16
D18V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804B MUTATED      1   20
  ZNF804B WILD-TYPE    7  104
     clus
vv    ZNF804B MUTATED ZNF804B WILD-TYPE
  NO                1                 7
  YES              20               104

Clustering(19) Variable = CDH1 MUTATION ANALYSIS
D19V1, survival
                sevent
clus2             0  1
  CDH1 MUTATED    8  0
  CDH1 WILD-TYPE 63 14
  CDH1 MUTATED CDH1 WILD-TYPE 
             8             77 
  CDH1 MUTATED CDH1 WILD-TYPE 
             0             14 
$`CDH1 MUTATED`
TCGA-BR-6452 TCGA-BR-6803 TCGA-CD-5799 TCGA-CD-5813 TCGA-CG-4474 TCGA-D7-6518 
        0.95         0.66         0.69         0.39         1.02         9.80 
TCGA-D7-6522 TCGA-F1-6874 
        6.90         2.01 

$`CDH1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5800 
        0.66         1.12         0.76         0.26         0.82         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.49         0.30         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        0.95        70.06        12.03        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6524 
        3.58         4.54        15.65         9.63         8.19         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.04         2.93         4.27         0.62         6.54 

  CDH1 MUTATED CDH1 WILD-TYPE 
          0.39           0.07 
  CDH1 MUTATED CDH1 WILD-TYPE 
          9.80          70.06 
  CDH1 MUTATED CDH1 WILD-TYPE 
         0.985          4.140 
[1] "0.4 - 9.8 (1.0)"  "0.1 - 70.1 (4.1)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-F1-6874 
  "CDH1 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-F1-6874 
  "CDH1 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"CDH1 WILD-TYPE"   "CDH1 MUTATED" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE"   "CDH1 MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" "CDH1 WILD-TYPE" 
    TCGA-F1-6874 
  "CDH1 MUTATED" 
[1] "hr="     "2.7e+07"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH1 MUTATED      5    8
  CDH1 WILD-TYPE   48   71
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  FEMALE            5             48
  MALE              8             71
D19V4, multiclass
D19V5, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  T1            1              3
  T2            5             41
  T3            4             42
  T4            1             14
D19V6, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  N0            5             30
  N1            5             42
  N2            1             19
  N3            1             11
D19V7, multiclass
    clus
vv   CDH1 MUTATED CDH1 WILD-TYPE
  M0           12            103
  M1            1             12
  MX            0              4
D19V8, multiclass
     clus
vv    CDH1 MUTATED CDH1 WILD-TYPE
  I              2             16
  II             5             27
  III            1             32
  IV             2             19
D19V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH1 MUTATED      0   13
  CDH1 WILD-TYPE    8  111
     clus
vv    CDH1 MUTATED CDH1 WILD-TYPE
  NO             0              8
  YES           13            111

Clustering(20) Variable = TUSC3 MUTATION ANALYSIS
D20V1, survival
                 sevent
clus2              0  1
  TUSC3 MUTATED    6  1
  TUSC3 WILD-TYPE 65 13
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              7              78 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              1              13 
$`TUSC3 MUTATED`
TCGA-BR-6452 TCGA-BR-6457 TCGA-BR-6802 TCGA-CG-4460 TCGA-CG-5727 TCGA-D7-6524 
        0.95         1.35         0.76        21.99        31.04         0.69 
TCGA-D7-6818 
        4.04 

$`TUSC3 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        5.62         0.10         1.41         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        1.12         0.66         0.26         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        6.90         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.70         2.93         4.27         0.62         6.54         2.01 

  TUSC3 MUTATED TUSC3 WILD-TYPE 
           0.69            0.07 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
          31.04           70.06 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
          1.350           4.075 
[1] "0.7 - 31.0 (1.4)" "0.1 - 70.1 (4.1)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-F1-6874 
"TUSC3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-F1-6874 
"TUSC3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-F1-6874 
"TUSC3 WILD-TYPE" 
[1] "hr=" "1.4"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      4    7
  TUSC3 WILD-TYPE   49   72
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  FEMALE             4              49
  MALE               7              72
D20V4, multiclass
D20V5, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  T1             0               4
  T2             2              44
  T3             5              41
  T4             2              13
D20V6, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  N0             4              31
  N1             5              42
  N2             0              20
  N3             1              11
D20V7, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  M0             9             106
  M1             1              12
  MX             1               3
D20V8, multiclass
     clus
vv    TUSC3 MUTATED TUSC3 WILD-TYPE
  I               0              18
  II              4              28
  III             3              30
  IV              2              19
D20V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      1   10
  TUSC3 WILD-TYPE    7  114
     clus
vv    TUSC3 MUTATED TUSC3 WILD-TYPE
  NO              1               7
  YES            10             114

Clustering(21) Variable = PRRT2 MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  PRRT2 MUTATED    2  0
  PRRT2 WILD-TYPE 69 14
  PRRT2 MUTATED PRRT2 WILD-TYPE 
              2              83 
  PRRT2 MUTATED PRRT2 WILD-TYPE 
              0              14 
$`PRRT2 MUTATED`
TCGA-CG-5723 TCGA-F1-6177 
       70.06         6.54 

$`PRRT2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         2.01 

  PRRT2 MUTATED PRRT2 WILD-TYPE 
           6.54            0.07 
  PRRT2 MUTATED PRRT2 WILD-TYPE 
          70.06           65.10 
  PRRT2 MUTATED PRRT2 WILD-TYPE 
          38.30            4.01 
[1] "6.5 - 70.1 (38.3)" "0.1 - 65.1 (4.0)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE"   "PRRT2 MUTATED" "PRRT2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE"   "PRRT2 MUTATED" 
     TCGA-F1-6874 
"PRRT2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE"   "PRRT2 MUTATED" "PRRT2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE"   "PRRT2 MUTATED" 
     TCGA-F1-6874 
"PRRT2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE"   "PRRT2 MUTATED" "PRRT2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE"   "PRRT2 MUTATED" 
     TCGA-F1-6874 
"PRRT2 WILD-TYPE" 
[1] "Remove cluster labels:" "PRRT2 MUTATED"         
clus
  PRRT2 MUTATED PRRT2 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5724      TCGA-CG-5725 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6874 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
D21V2, continuous
D21V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRRT2 MUTATED      2    3
  PRRT2 WILD-TYPE   51   76
        clus
vv       PRRT2 MUTATED PRRT2 WILD-TYPE
  FEMALE             2              51
  MALE               3              76
D21V4, multiclass
D21V5, multiclass
    clus
vv   PRRT2 MUTATED PRRT2 WILD-TYPE
  T1             2               2
  T2             1              45
  T3             0              46
  T4             0              15
D21V6, multiclass
    clus
vv   PRRT2 MUTATED PRRT2 WILD-TYPE
  N0             0              35
  N1             3              44
  N2             0              20
  N3             0              12
D21V7, multiclass
    clus
vv   PRRT2 MUTATED PRRT2 WILD-TYPE
  M0             4             111
  M1             0              13
  MX             1               3
D21V8, multiclass
[1] "Remove cluster labels:" "PRRT2 MUTATED"         
clus
  PRRT2 MUTATED PRRT2 WILD-TYPE 
              2             102 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-4190      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4267 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-4278      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4298 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-4361      TCGA-BR-4368      TCGA-BR-4376      TCGA-BR-6452 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6453      TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4442 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4460      TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4475 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6874 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
D21V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRRT2 MUTATED      0    5
  PRRT2 WILD-TYPE    8  119
     clus
vv    PRRT2 MUTATED PRRT2 WILD-TYPE
  NO              0               8
  YES             5             119

Clustering(22) Variable = PTH2 MUTATION ANALYSIS
D22V1, survival
                sevent
clus2             0  1
  PTH2 MUTATED    2  0
  PTH2 WILD-TYPE 69 14
  PTH2 MUTATED PTH2 WILD-TYPE 
             2             83 
  PTH2 MUTATED PTH2 WILD-TYPE 
             0             14 
$`PTH2 MUTATED`
TCGA-BR-6706 TCGA-D7-6519 
        2.17        15.65 

$`PTH2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         0.62         1.71         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        9.80         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  PTH2 MUTATED PTH2 WILD-TYPE 
          2.17           0.07 
  PTH2 MUTATED PTH2 WILD-TYPE 
         15.65          70.06 
  PTH2 MUTATED PTH2 WILD-TYPE 
          8.91           4.01 
[1] "2.2 - 15.7 (8.9)" "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE"   "PTH2 MUTATED" "PTH2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
  "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-F1-6874 
"PTH2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE"   "PTH2 MUTATED" "PTH2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
  "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-F1-6874 
"PTH2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE"   "PTH2 MUTATED" "PTH2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
  "PTH2 MUTATED" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-F1-6874 
"PTH2 WILD-TYPE" 
[1] "Remove cluster labels:" "PTH2 MUTATED"          
clus
  PTH2 MUTATED PTH2 WILD-TYPE 
             2             83 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6707     TCGA-BR-6709 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460     TCGA-CG-4462 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4472 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716     TCGA-CG-5717 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6520 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-F1-6177     TCGA-F1-6874 
"PTH2 WILD-TYPE" "PTH2 WILD-TYPE" "PTH2 WILD-TYPE" 
D22V2, continuous
D22V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTH2 MUTATED      2    1
  PTH2 WILD-TYPE   51   78
        clus
vv       PTH2 MUTATED PTH2 WILD-TYPE
  FEMALE            2             51
  MALE              1             78
D22V4, multiclass
D22V5, multiclass
    clus
vv   PTH2 MUTATED PTH2 WILD-TYPE
  T1            0              4
  T2            1             45
  T3            2             44
  T4            0             15
D22V6, multiclass
    clus
vv   PTH2 MUTATED PTH2 WILD-TYPE
  N0            0             35
  N1            3             44
  N2            0             20
  N3            0             12
D22V7, multiclass
    clus
vv   PTH2 MUTATED PTH2 WILD-TYPE
  M0            3            112
  M1            0             13
  MX            0              4
D22V8, multiclass
     clus
vv    PTH2 MUTATED PTH2 WILD-TYPE
  I              0             18
  II             1             31
  III            2             31
  IV             0             21
D22V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTH2 MUTATED      1    2
  PTH2 WILD-TYPE    7  122
     clus
vv    PTH2 MUTATED PTH2 WILD-TYPE
  NO             1              7
  YES            2            122

Clustering(23) Variable = C17ORF63 MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                 0  1
  C17ORF63 MUTATED    2  0
  C17ORF63 WILD-TYPE 69 14
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 2                 83 
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 0                 14 
$`C17ORF63 MUTATED`
TCGA-B7-5816 TCGA-CG-4436 
        5.62        52.96 

$`C17ORF63 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
       20.02         3.02        27.02        15.95         1.02         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
              5.62               0.07 
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
             52.96              70.06 
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
             29.29               4.01 
[1] "5.6 - 53.0 (29.3)" "0.1 - 70.1 (4.0)" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-F1-6874 
"C17ORF63 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-F1-6874 
"C17ORF63 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-F1-6874 
"C17ORF63 WILD-TYPE" 
[1] "Remove cluster labels:" "C17ORF63 MUTATED"      
clus
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 2                 83 
        TCGA-B7-5818         TCGA-BR-6452         TCGA-BR-6455 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6457         TCGA-BR-6458         TCGA-BR-6564 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6565         TCGA-BR-6566         TCGA-BR-6705 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6706         TCGA-BR-6707         TCGA-BR-6709 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6710         TCGA-BR-6801         TCGA-BR-6802 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-CD-5798 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5813 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4300         TCGA-CG-4301         TCGA-CG-4304 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4305         TCGA-CG-4306         TCGA-CG-4437 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4438         TCGA-CG-4440         TCGA-CG-4441 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4443         TCGA-CG-4444         TCGA-CG-4449 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4455         TCGA-CG-4460         TCGA-CG-4462 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4465         TCGA-CG-4466         TCGA-CG-4469 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4472         TCGA-CG-4474         TCGA-CG-4477 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5716         TCGA-CG-5717         TCGA-CG-5718 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5719         TCGA-CG-5720         TCGA-CG-5721 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5722         TCGA-CG-5723         TCGA-CG-5724 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5725         TCGA-CG-5726         TCGA-CG-5727 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5728         TCGA-CG-5730         TCGA-CG-5732 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5733         TCGA-CG-5734         TCGA-D7-5577 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5578         TCGA-D7-5579         TCGA-D7-6518 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6519         TCGA-D7-6520         TCGA-D7-6521 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6522         TCGA-D7-6524         TCGA-D7-6525 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6526         TCGA-D7-6527         TCGA-D7-6528 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6815         TCGA-D7-6817         TCGA-D7-6818 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6820         TCGA-D7-6822         TCGA-EQ-5647 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-F1-6177         TCGA-F1-6874 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C17ORF63 MUTATED      2    2
  C17ORF63 WILD-TYPE   51   77
        clus
vv       C17ORF63 MUTATED C17ORF63 WILD-TYPE
  FEMALE                2                 51
  MALE                  2                 77
D23V4, multiclass
D23V5, multiclass
    clus
vv   C17ORF63 MUTATED C17ORF63 WILD-TYPE
  T1                0                  4
  T2                1                 45
  T3                1                 45
  T4                2                 13
D23V6, multiclass
    clus
vv   C17ORF63 MUTATED C17ORF63 WILD-TYPE
  N0                2                 33
  N1                1                 46
  N2                1                 19
  N3                0                 12
D23V7, multiclass
    clus
vv   C17ORF63 MUTATED C17ORF63 WILD-TYPE
  M0                4                111
  M1                0                 13
  MX                0                  4
D23V8, multiclass
     clus
vv    C17ORF63 MUTATED C17ORF63 WILD-TYPE
  I                  1                 17
  II                 0                 32
  III                2                 31
  IV                 1                 20
D23V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C17ORF63 MUTATED      0    4
  C17ORF63 WILD-TYPE    8  120
     clus
vv    C17ORF63 MUTATED C17ORF63 WILD-TYPE
  NO                 0                  8
  YES                4                120

Clustering(24) Variable = IAPP MUTATION ANALYSIS
D24V1, survival
                sevent
clus2             0  1
  IAPP MUTATED    2  0
  IAPP WILD-TYPE 69 14
  IAPP MUTATED IAPP WILD-TYPE 
             2             83 
  IAPP MUTATED IAPP WILD-TYPE 
             0             14 
$`IAPP MUTATED`
TCGA-CG-4466 TCGA-D7-6522 
       18.94         6.90 

$`IAPP WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6524 TCGA-D7-6525 
        9.80        15.65         9.63         8.19         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  IAPP MUTATED IAPP WILD-TYPE 
          6.90           0.07 
  IAPP MUTATED IAPP WILD-TYPE 
         18.94          70.06 
  IAPP MUTATED IAPP WILD-TYPE 
         12.92           4.01 
[1] "6.9 - 18.9 (12.9)" "0.1 - 70.1 (4.0)" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" "IAPP WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-F1-6874 
"IAPP WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" "IAPP WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-F1-6874 
"IAPP WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" "IAPP WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-F1-6874 
"IAPP WILD-TYPE" 
[1] "Remove cluster labels:" "IAPP MUTATED"          
clus
  IAPP MUTATED IAPP WILD-TYPE 
             2             83 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4469     TCGA-CG-4472 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716     TCGA-CG-5717 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6524     TCGA-D7-6525 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-EQ-5647     TCGA-F1-6177     TCGA-F1-6874 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
D24V2, continuous
D24V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IAPP MUTATED      1    3
  IAPP WILD-TYPE   52   76
        clus
vv       IAPP MUTATED IAPP WILD-TYPE
  FEMALE            1             52
  MALE              3             76
D24V4, multiclass
D24V5, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  T1            0              4
  T2            2             44
  T3            1             45
  T4            0             15
D24V6, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  N0            2             33
  N1            2             45
  N2            0             20
  N3            0             12
D24V7, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  M0            3            112
  M1            0             13
  MX            1              3
D24V8, multiclass
     clus
vv    IAPP MUTATED IAPP WILD-TYPE
  I              2             16
  II             0             32
  III            1             32
  IV             0             21
D24V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IAPP MUTATED      0    4
  IAPP WILD-TYPE    8  120
     clus
vv    IAPP MUTATED IAPP WILD-TYPE
  NO             0              8
  YES            4            120

Clustering(25) Variable = IRF2 MUTATION ANALYSIS
D25V1, survival
                sevent
clus2             0  1
  IRF2 MUTATED    2  1
  IRF2 WILD-TYPE 69 13
  IRF2 MUTATED IRF2 WILD-TYPE 
             3             82 
  IRF2 MUTATED IRF2 WILD-TYPE 
             1             13 
$`IRF2 MUTATED`
TCGA-B7-5816 TCGA-BR-6452 TCGA-CG-5726 
        5.62         0.95        28.96 

$`IRF2 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        0.10         1.41         1.35         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
        1.12         0.76         0.66         0.26         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       15.02        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  IRF2 MUTATED IRF2 WILD-TYPE 
          0.95           0.07 
  IRF2 MUTATED IRF2 WILD-TYPE 
         28.96          70.06 
  IRF2 MUTATED IRF2 WILD-TYPE 
          5.62           4.01 
[1] "0.9 - 29.0 (5.6)" "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
  "IRF2 MUTATED" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-F1-6874 
"IRF2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
  "IRF2 MUTATED" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-F1-6874 
"IRF2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
  "IRF2 MUTATED" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-F1-6874 
"IRF2 WILD-TYPE" 
[1] "hr=" "1.4"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRF2 MUTATED      6    2
  IRF2 WILD-TYPE   47   77
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  FEMALE            6             47
  MALE              2             77
D25V4, multiclass
D25V5, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  T1            1              3
  T2            0             46
  T3            2             44
  T4            2             13
D25V6, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  N0            3             32
  N1            2             45
  N2            1             19
  N3            0             12
D25V7, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  M0            7            108
  M1            0             13
  MX            1              3
D25V8, multiclass
     clus
vv    IRF2 MUTATED IRF2 WILD-TYPE
  I              1             17
  II             1             31
  III            2             31
  IV             1             20
D25V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRF2 MUTATED      0    8
  IRF2 WILD-TYPE    8  116
     clus
vv    IRF2 MUTATED IRF2 WILD-TYPE
  NO             0              8
  YES            8            116

Clustering(26) Variable = RNF43 MUTATION ANALYSIS
D26V1, survival
                 sevent
clus2              0  1
  RNF43 MUTATED    1  5
  RNF43 WILD-TYPE 70  9
  RNF43 MUTATED RNF43 WILD-TYPE 
              6              79 
  RNF43 MUTATED RNF43 WILD-TYPE 
              5               9 
$`RNF43 MUTATED`
TCGA-CG-4469 TCGA-CG-5720 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 
        7.07         0.99        28.96        65.10        21.07         7.99 

$`RNF43 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
       18.94        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-5578 
       15.02        31.04         4.01        55.04         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        4.54         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  RNF43 MUTATED RNF43 WILD-TYPE 
           0.99            0.07 
  RNF43 MUTATED RNF43 WILD-TYPE 
          65.10           70.06 
  RNF43 MUTATED RNF43 WILD-TYPE 
          14.53            3.65 
[1] "1.0 - 65.1 (14.5)" "0.1 - 70.1 (3.6)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-F1-6874 
"RNF43 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-F1-6874 
"RNF43 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-F1-6874 
"RNF43 WILD-TYPE" 
[1] "hr=" "3.3"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF43 MUTATED      8    7
  RNF43 WILD-TYPE   45   72
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  FEMALE             8              45
  MALE               7              72
D26V4, multiclass
D26V5, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  T1             2               2
  T2             6              40
  T3             3              43
  T4             2              13
D26V6, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  N0             5              30
  N1             5              42
  N2             2              18
  N3             1              11
D26V7, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  M0            15             100
  M1             0              13
  MX             0               4
D26V8, multiclass
     clus
vv    RNF43 MUTATED RNF43 WILD-TYPE
  I               4              14
  II              1              31
  III             4              29
  IV              2              19
D26V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF43 MUTATED      0   15
  RNF43 WILD-TYPE    8  109
     clus
vv    RNF43 MUTATED RNF43 WILD-TYPE
  NO              0               8
  YES            15             109

Clustering(27) Variable = HLA-B MUTATION ANALYSIS
D27V1, survival
                 sevent
clus2              0  1
  HLA-B MUTATED    4  2
  HLA-B WILD-TYPE 67 12
  HLA-B MUTATED HLA-B WILD-TYPE 
              6              79 
  HLA-B MUTATED HLA-B WILD-TYPE 
              2              12 
$`HLA-B MUTATED`
TCGA-B7-5816 TCGA-BR-6852 TCGA-CG-4460 TCGA-CG-5726 TCGA-CG-5728 TCGA-F1-6874 
        5.62         0.26        21.99        28.96        65.10         2.01 

$`HLA-B WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6177 
        6.54 

  HLA-B MUTATED HLA-B WILD-TYPE 
           0.26            0.07 
  HLA-B MUTATED HLA-B WILD-TYPE 
          65.10           70.06 
  HLA-B MUTATED HLA-B WILD-TYPE 
         13.805           4.010 
[1] "0.3 - 65.1 (13.8)" "0.1 - 70.1 (4.0)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F1-6874 
  "HLA-B MUTATED" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F1-6874 
  "HLA-B MUTATED" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F1-6874 
  "HLA-B MUTATED" 
[1] "hr=" "1"  
D27V2, continuous
D27V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-B MUTATED      7    3
  HLA-B WILD-TYPE   46   76
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  FEMALE             7              46
  MALE               3              76
D27V4, multiclass
D27V5, multiclass
    clus
vv   HLA-B MUTATED HLA-B WILD-TYPE
  T1             1               3
  T2             3              43
  T3             3              43
  T4             3              12
D27V6, multiclass
    clus
vv   HLA-B MUTATED HLA-B WILD-TYPE
  N0             6              29
  N1             3              44
  N2             0              20
  N3             0              12
D27V7, multiclass
    clus
vv   HLA-B MUTATED HLA-B WILD-TYPE
  M0             8             107
  M1             1              12
  MX             1               3
D27V8, multiclass
     clus
vv    HLA-B MUTATED HLA-B WILD-TYPE
  I               3              15
  II              1              31
  III             4              29
  IV              1              20
D27V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-B MUTATED      0   10
  HLA-B WILD-TYPE    8  114
     clus
vv    HLA-B MUTATED HLA-B WILD-TYPE
  NO              0               8
  YES            10             114

Clustering(28) Variable = HLA-A MUTATION ANALYSIS
D28V1, survival
                 sevent
clus2              0  1
  HLA-A MUTATED    5  0
  HLA-A WILD-TYPE 66 14
  HLA-A MUTATED HLA-A WILD-TYPE 
              5              80 
  HLA-A MUTATED HLA-A WILD-TYPE 
              0              14 
$`HLA-A MUTATED`
TCGA-BR-6852 TCGA-CG-4438 TCGA-CG-5718 TCGA-D7-6527 TCGA-F1-6874 
        0.26        54.05         1.02         4.14         2.01 

$`HLA-A WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 
        1.22         0.66         1.12         0.76         0.66         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
        8.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 
        0.62         6.54 

  HLA-A MUTATED HLA-A WILD-TYPE 
           0.26            0.07 
  HLA-A MUTATED HLA-A WILD-TYPE 
          54.05           70.06 
  HLA-A MUTATED HLA-A WILD-TYPE 
          2.010           4.025 
[1] "0.3 - 54.0 (2.0)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-F1-6874 
  "HLA-A MUTATED" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-F1-6874 
  "HLA-A MUTATED" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-F1-6874 
  "HLA-A MUTATED" 
[1] "hr="     "7.3e+07"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-A MUTATED      5    4
  HLA-A WILD-TYPE   48   75
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  FEMALE             5              48
  MALE               4              75
D28V4, multiclass
D28V5, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  T1             0               4
  T2             3              43
  T3             2              44
  T4             2              13
D28V6, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  N0             3              32
  N1             5              42
  N2             1              19
  N3             0              12
D28V7, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  M0             9             106
  M1             0              13
  MX             0               4
D28V8, multiclass
     clus
vv    HLA-A MUTATED HLA-A WILD-TYPE
  I               1              17
  II              3              29
  III             2              31
  IV              1              20
D28V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-A MUTATED      1    8
  HLA-A WILD-TYPE    7  116
     clus
vv    HLA-A MUTATED HLA-A WILD-TYPE
  NO              1               7
  YES             8             116

Clustering(29) Variable = SMAD4 MUTATION ANALYSIS
D29V1, survival
                 sevent
clus2              0  1
  SMAD4 MUTATED    3  1
  SMAD4 WILD-TYPE 68 13
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              4              81 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              1              13 
$`SMAD4 MUTATED`
TCGA-CD-5799 TCGA-CG-4469 TCGA-CG-5719 TCGA-D7-6815 
        0.69         7.07         1.02         3.65 

$`SMAD4 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.82         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        4.14         1.68         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  SMAD4 MUTATED SMAD4 WILD-TYPE 
           0.69            0.07 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
           7.07           70.06 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          2.335           4.040 
[1] "0.7 - 7.1 (2.3)"  "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F1-6874 
"SMAD4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F1-6874 
"SMAD4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F1-6874 
"SMAD4 WILD-TYPE" 
[1] "hr=" "5"  
D29V2, continuous
D29V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      3    5
  SMAD4 WILD-TYPE   50   74
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE             3              50
  MALE               5              74
D29V4, multiclass
D29V5, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  T1             0               4
  T2             4              42
  T3             2              44
  T4             1              14
D29V6, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  N0             2              33
  N1             3              44
  N2             1              19
  N3             1              11
D29V7, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  M0             6             109
  M1             1              12
  MX             1               3
D29V8, multiclass
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  I               1              17
  II              2              30
  III             2              31
  IV              2              19
D29V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      0    8
  SMAD4 WILD-TYPE    8  116
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  NO              0               8
  YES             8             116

Clustering(30) Variable = UPF3A MUTATION ANALYSIS
D30V1, survival
                 sevent
clus2              0  1
  UPF3A MUTATED    3  0
  UPF3A WILD-TYPE 68 14
  UPF3A MUTATED UPF3A WILD-TYPE 
              3              82 
  UPF3A MUTATED UPF3A WILD-TYPE 
              0              14 
$`UPF3A MUTATED`
TCGA-CG-5721 TCGA-D7-6822 TCGA-F1-6177 
        5.98         4.27         6.54 

$`UPF3A WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         1.02         0.99         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6874 
        4.04         2.93         0.62         2.01 

  UPF3A MUTATED UPF3A WILD-TYPE 
           4.27            0.07 
  UPF3A MUTATED UPF3A WILD-TYPE 
           6.54           70.06 
  UPF3A MUTATED UPF3A WILD-TYPE 
           5.98            3.83 
[1] "4.3 - 6.5 (6.0)"  "0.1 - 70.1 (3.8)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "UPF3A MUTATED" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"UPF3A WILD-TYPE"   "UPF3A MUTATED" "UPF3A WILD-TYPE"   "UPF3A MUTATED" 
     TCGA-F1-6874 
"UPF3A WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "UPF3A MUTATED" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"UPF3A WILD-TYPE"   "UPF3A MUTATED" "UPF3A WILD-TYPE"   "UPF3A MUTATED" 
     TCGA-F1-6874 
"UPF3A WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "UPF3A MUTATED" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"UPF3A WILD-TYPE"   "UPF3A MUTATED" "UPF3A WILD-TYPE"   "UPF3A MUTATED" 
     TCGA-F1-6874 
"UPF3A WILD-TYPE" 
[1] "hr="     "9700000"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UPF3A MUTATED      4    3
  UPF3A WILD-TYPE   49   76
        clus
vv       UPF3A MUTATED UPF3A WILD-TYPE
  FEMALE             4              49
  MALE               3              76
D30V4, multiclass
D30V5, multiclass
    clus
vv   UPF3A MUTATED UPF3A WILD-TYPE
  T1             2               2
  T2             2              44
  T3             0              46
  T4             2              13
D30V6, multiclass
    clus
vv   UPF3A MUTATED UPF3A WILD-TYPE
  N0             2              33
  N1             4              43
  N2             0              20
  N3             0              12
D30V7, multiclass
    clus
vv   UPF3A MUTATED UPF3A WILD-TYPE
  M0             6             109
  M1             0              13
  MX             1               3
D30V8, multiclass
     clus
vv    UPF3A MUTATED UPF3A WILD-TYPE
  I               2              16
  II              0              32
  III             2              31
  IV              1              20
D30V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UPF3A MUTATED      0    7
  UPF3A WILD-TYPE    8  117
     clus
vv    UPF3A MUTATED UPF3A WILD-TYPE
  NO              0               8
  YES             7             117

Clustering(31) Variable = CCDC43 MUTATION ANALYSIS
D31V1, survival
                  sevent
clus2               0  1
  CCDC43 MUTATED    1  0
  CCDC43 WILD-TYPE 70 14
  CCDC43 MUTATED CCDC43 WILD-TYPE 
               1               84 
  CCDC43 MUTATED CCDC43 WILD-TYPE 
               0               14 
$`CCDC43 MUTATED`
TCGA-CD-5801 
        0.49 

$`CCDC43 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.82         0.69         0.36         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 

  CCDC43 MUTATED CCDC43 WILD-TYPE 
            0.49             0.07 
  CCDC43 MUTATED CCDC43 WILD-TYPE 
            0.49            70.06 
  CCDC43 MUTATED CCDC43 WILD-TYPE 
           0.490            4.025 
[1] "0.5 - 0.5 (0.5)"  "0.1 - 70.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CCDC43 WILD-TYPE"   "CCDC43 MUTATED" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-F1-6874 
"CCDC43 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CCDC43 WILD-TYPE"   "CCDC43 MUTATED" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-F1-6874 
"CCDC43 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CCDC43 WILD-TYPE"   "CCDC43 MUTATED" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-F1-6874 
"CCDC43 WILD-TYPE" 
[1] "Remove cluster labels:" "CCDC43 MUTATED"        
clus
  CCDC43 MUTATED CCDC43 WILD-TYPE 
               1               84 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460       TCGA-CG-4462 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
      TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" "CCDC43 WILD-TYPE" 
D31V2, continuous
D31V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC43 MUTATED      2    2
  CCDC43 WILD-TYPE   51   77
        clus
vv       CCDC43 MUTATED CCDC43 WILD-TYPE
  FEMALE              2               51
  MALE                2               77
D31V4, multiclass
D31V5, multiclass
    clus
vv   CCDC43 MUTATED CCDC43 WILD-TYPE
  T1              0                4
  T2              0               46
  T3              2               44
  T4              1               14
D31V6, multiclass
    clus
vv   CCDC43 MUTATED CCDC43 WILD-TYPE
  N0              1               34
  N1              3               44
  N2              0               20
  N3              0               12
D31V7, multiclass
    clus
vv   CCDC43 MUTATED CCDC43 WILD-TYPE
  M0              4              111
  M1              0               13
  MX              0                4
D31V8, multiclass
     clus
vv    CCDC43 MUTATED CCDC43 WILD-TYPE
  I                0               18
  II               0               32
  III              3               30
  IV               0               21
D31V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC43 MUTATED      0    4
  CCDC43 WILD-TYPE    8  120
     clus
vv    CCDC43 MUTATED CCDC43 WILD-TYPE
  NO               0                8
  YES              4              120

Clustering(32) Variable = PCDH15 MUTATION ANALYSIS
D32V1, survival
                  sevent
clus2               0  1
  PCDH15 MUTATED   13  3
  PCDH15 WILD-TYPE 58 11
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              16               69 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
               3               11 
$`PCDH15 MUTATED`
TCGA-B7-5818 TCGA-BR-6706 TCGA-BR-6802 TCGA-CD-5813 TCGA-CG-4436 TCGA-CG-4460 
        0.10         2.17         0.76         0.39        52.96        21.99 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5727 TCGA-D7-6524 
       18.94        12.00         1.02         0.99        31.04         0.69 
TCGA-D7-6526 TCGA-D7-6818 TCGA-EQ-5647 TCGA-F1-6874 
        6.61         4.04         0.62         2.01 

$`PCDH15 WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         0.62         1.71         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        1.12         0.66         0.26         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.49         0.30         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
       15.95         1.02         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 
       29.98        47.05        19.07        12.03         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        6.90         5.95         4.14         1.68         3.65         4.70 
TCGA-D7-6820 TCGA-D7-6822 TCGA-F1-6177 
        2.93         4.27         6.54 

  PCDH15 MUTATED PCDH15 WILD-TYPE 
            0.10             0.07 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
           52.96            70.06 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
            2.09             4.14 
[1] "0.1 - 53.0 (2.1)" "0.1 - 70.1 (4.1)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED"   "PCDH15 MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-F1-6874 
  "PCDH15 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED"   "PCDH15 MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-F1-6874 
  "PCDH15 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED"   "PCDH15 MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-F1-6874 
  "PCDH15 MUTATED" 
[1] "hr=" "1.1"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED     11   12
  PCDH15 WILD-TYPE   42   67
        clus
vv       PCDH15 MUTATED PCDH15 WILD-TYPE
  FEMALE             11               42
  MALE               12               67
D32V4, multiclass
D32V5, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  T1              1                3
  T2              9               37
  T3              6               40
  T4              5               10
D32V6, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  N0              8               27
  N1              9               38
  N2              2               18
  N3              2               10
D32V7, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  M0             19               96
  M1              3               10
  MX              1                3
D32V8, multiclass
     clus
vv    PCDH15 MUTATED PCDH15 WILD-TYPE
  I                5               13
  II               3               29
  III              5               28
  IV               6               15
D32V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED      2   21
  PCDH15 WILD-TYPE    6  103
     clus
vv    PCDH15 MUTATED PCDH15 WILD-TYPE
  NO               2                6
  YES             21              103

Clustering(33) Variable = PHF2 MUTATION ANALYSIS
D33V1, survival
                sevent
clus2             0  1
  PHF2 MUTATED    4  2
  PHF2 WILD-TYPE 67 12
  PHF2 MUTATED PHF2 WILD-TYPE 
             6             79 
  PHF2 MUTATED PHF2 WILD-TYPE 
             2             12 
$`PHF2 MUTATED`
TCGA-BR-6852 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5733 TCGA-F1-6177 TCGA-F1-6874 
        0.26        70.06        28.96        21.07         6.54         2.01 

$`PHF2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 
        1.22         0.66         1.12         0.76         0.66         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 
        1.02         1.02         0.99         5.98         0.95        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 
       15.02        31.04        65.10         4.01        55.04         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 
        0.62 

  PHF2 MUTATED PHF2 WILD-TYPE 
          0.26           0.07 
  PHF2 MUTATED PHF2 WILD-TYPE 
         70.06          65.10 
  PHF2 MUTATED PHF2 WILD-TYPE 
        13.805          4.010 
[1] "0.3 - 70.1 (13.8)" "0.1 - 65.1 (4.0)" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" 
    TCGA-F1-6874 
  "PHF2 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" 
    TCGA-F1-6874 
  "PHF2 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" "PHF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PHF2 WILD-TYPE" "PHF2 WILD-TYPE" "PHF2 WILD-TYPE"   "PHF2 MUTATED" 
    TCGA-F1-6874 
  "PHF2 MUTATED" 
[1] "hr=" "1.1"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PHF2 MUTATED      7    6
  PHF2 WILD-TYPE   46   73
        clus
vv       PHF2 MUTATED PHF2 WILD-TYPE
  FEMALE            7             46
  MALE              6             73
D33V4, multiclass
D33V5, multiclass
    clus
vv   PHF2 MUTATED PHF2 WILD-TYPE
  T1            3              1
  T2            4             42
  T3            4             42
  T4            1             14
D33V6, multiclass
    clus
vv   PHF2 MUTATED PHF2 WILD-TYPE
  N0            5             30
  N1            4             43
  N2            2             18
  N3            0             12
D33V7, multiclass
    clus
vv   PHF2 MUTATED PHF2 WILD-TYPE
  M0           10            105
  M1            0             13
  MX            3              1
D33V8, multiclass
     clus
vv    PHF2 MUTATED PHF2 WILD-TYPE
  I              4             14
  II             2             30
  III            4             29
  IV             0             21
D33V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PHF2 MUTATED      0   13
  PHF2 WILD-TYPE    8  111
     clus
vv    PHF2 MUTATED PHF2 WILD-TYPE
  NO             0              8
  YES           13            111

Clustering(34) Variable = SPRYD5 MUTATION ANALYSIS
D34V1, survival
                  sevent
clus2               0  1
  SPRYD5 MUTATED    2  3
  SPRYD5 WILD-TYPE 69 11
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               5               80 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               3               11 
$`SPRYD5 MUTATED`
TCGA-CG-4306 TCGA-CG-4466 TCGA-CG-5724 TCGA-CG-5726 TCGA-F1-6177 
        1.02        18.94        12.03        28.96         6.54 

$`SPRYD5 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 
        0.39        20.02         3.02        27.02        15.95        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       19.07        12.03        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 
        1.02         0.99         5.98         0.95        70.06        15.02 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6874 
        0.62         2.01 

  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
            1.02             0.07 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
           28.96            70.06 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
           12.03             3.83 
[1] "1.0 - 29.0 (12.0)" "0.1 - 70.1 (3.8)" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-F1-6874 
"SPRYD5 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-F1-6874 
"SPRYD5 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-F1-6874 
"SPRYD5 WILD-TYPE" 
[1] "hr=" "2.5"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPRYD5 MUTATED      3    5
  SPRYD5 WILD-TYPE   50   74
        clus
vv       SPRYD5 MUTATED SPRYD5 WILD-TYPE
  FEMALE              3               50
  MALE                5               74
D34V4, multiclass
D34V5, multiclass
    clus
vv   SPRYD5 MUTATED SPRYD5 WILD-TYPE
  T1              2                2
  T2              2               44
  T3              2               44
  T4              1               14
D34V6, multiclass
    clus
vv   SPRYD5 MUTATED SPRYD5 WILD-TYPE
  N0              2               33
  N1              2               45
  N2              2               18
  N3              1               11
D34V7, multiclass
    clus
vv   SPRYD5 MUTATED SPRYD5 WILD-TYPE
  M0              5              110
  M1              2               11
  MX              1                3
D34V8, multiclass
     clus
vv    SPRYD5 MUTATED SPRYD5 WILD-TYPE
  I                3               15
  II               1               31
  III              0               33
  IV               3               18
D34V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPRYD5 MUTATED      0    8
  SPRYD5 WILD-TYPE    8  116
     clus
vv    SPRYD5 MUTATED SPRYD5 WILD-TYPE
  NO               0                8
  YES              8              116

Clustering(35) Variable = SOX1 MUTATION ANALYSIS
D35V1, survival
                sevent
clus2             0  1
  SOX1 MUTATED    3  0
  SOX1 WILD-TYPE 68 14
  SOX1 MUTATED SOX1 WILD-TYPE 
             3             82 
  SOX1 MUTATED SOX1 WILD-TYPE 
             0             14 
$`SOX1 MUTATED`
TCGA-CG-4436 TCGA-D7-6525 TCGA-D7-6817 
       52.96         5.95         4.70 

$`SOX1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 
        6.61         4.14         1.68         3.65         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  SOX1 MUTATED SOX1 WILD-TYPE 
          4.70           0.07 
  SOX1 MUTATED SOX1 WILD-TYPE 
         52.96          70.06 
  SOX1 MUTATED SOX1 WILD-TYPE 
          5.95           3.83 
[1] "4.7 - 53.0 (6.0)" "0.1 - 70.1 (3.8)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE"   "SOX1 MUTATED" "SOX1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"SOX1 WILD-TYPE"   "SOX1 MUTATED" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE"   "SOX1 MUTATED" "SOX1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-F1-6874 
"SOX1 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE"   "SOX1 MUTATED" "SOX1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"SOX1 WILD-TYPE"   "SOX1 MUTATED" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE"   "SOX1 MUTATED" "SOX1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-F1-6874 
"SOX1 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE"   "SOX1 MUTATED" "SOX1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"SOX1 WILD-TYPE"   "SOX1 MUTATED" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE"   "SOX1 MUTATED" "SOX1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" "SOX1 WILD-TYPE" 
    TCGA-F1-6874 
"SOX1 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX1 MUTATED      2    4
  SOX1 WILD-TYPE   51   75
        clus
vv       SOX1 MUTATED SOX1 WILD-TYPE
  FEMALE            2             51
  MALE              4             75
D35V4, multiclass
D35V5, multiclass
    clus
vv   SOX1 MUTATED SOX1 WILD-TYPE
  T1            1              3
  T2            3             43
  T3            1             45
  T4            1             14
D35V6, multiclass
    clus
vv   SOX1 MUTATED SOX1 WILD-TYPE
  N0            1             34
  N1            0             47
  N2            2             18
  N3            1             11
D35V7, multiclass
    clus
vv   SOX1 MUTATED SOX1 WILD-TYPE
  M0            6            109
  M1            0             13
  MX            0              4
D35V8, multiclass
     clus
vv    SOX1 MUTATED SOX1 WILD-TYPE
  I              1             17
  II             0             32
  III            2             31
  IV             1             20
D35V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX1 MUTATED      1    5
  SOX1 WILD-TYPE    7  119
     clus
vv    SOX1 MUTATED SOX1 WILD-TYPE
  NO             1              7
  YES            5            119

Clustering(36) Variable = POTEG MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2              0  1
  POTEG MUTATED    3  0
  POTEG WILD-TYPE 68 14
  POTEG MUTATED POTEG WILD-TYPE 
              3              82 
  POTEG MUTATED POTEG WILD-TYPE 
              0              14 
$`POTEG MUTATED`
TCGA-CD-5798 TCGA-CG-5723 TCGA-CG-5728 
        0.82        70.06        65.10 

$`POTEG WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 
        1.02         1.02         0.99         5.98         0.95        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       15.02        28.96        31.04         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  POTEG MUTATED POTEG WILD-TYPE 
           0.82            0.07 
  POTEG MUTATED POTEG WILD-TYPE 
          70.06           55.04 
  POTEG MUTATED POTEG WILD-TYPE 
          65.10            4.01 
[1] "0.8 - 70.1 (65.1)" "0.1 - 55.0 (4.0)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-F1-6874 
"POTEG WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-F1-6874 
"POTEG WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-F1-6874 
"POTEG WILD-TYPE" 
[1] "hr="     "8.2e+07"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEG MUTATED      3    3
  POTEG WILD-TYPE   50   76
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  FEMALE             3              50
  MALE               3              76
D36V4, multiclass
D36V5, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  T1             0               4
  T2             3              43
  T3             1              45
  T4             1              14
D36V6, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  N0             3              32
  N1             3              44
  N2             0              20
  N3             0              12
D36V7, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  M0             6             109
  M1             0              13
  MX             0               4
D36V8, multiclass
     clus
vv    POTEG MUTATED POTEG WILD-TYPE
  I               1              17
  II              2              30
  III             2              31
  IV              0              21
D36V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEG MUTATED      0    6
  POTEG WILD-TYPE    8  118
     clus
vv    POTEG MUTATED POTEG WILD-TYPE
  NO              0               8
  YES             6             118

Clustering(37) Variable = TPTE MUTATION ANALYSIS
D37V1, survival
                sevent
clus2             0  1
  TPTE MUTATED    7  1
  TPTE WILD-TYPE 64 13
  TPTE MUTATED TPTE WILD-TYPE 
             8             77 
  TPTE MUTATED TPTE WILD-TYPE 
             1             13 
$`TPTE MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6565 TCGA-CD-5800 TCGA-CG-4465 TCGA-CG-5719 
        0.10         1.35         0.62         0.36         8.98         1.02 
TCGA-CG-5721 TCGA-D7-6527 
        5.98         4.14 

$`TPTE WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6564 TCGA-BR-6566 
        5.62         0.95         1.41         1.35         0.82         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        1.71         2.17         0.99         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 
        0.76         0.66         0.26         0.82         0.69         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.30         0.07         0.39        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 
        1.02         6.94         1.02         0.99         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        5.95         6.61         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  TPTE MUTATED TPTE WILD-TYPE 
          0.10           0.07 
  TPTE MUTATED TPTE WILD-TYPE 
          8.98          70.06 
  TPTE MUTATED TPTE WILD-TYPE 
         1.185          4.040 
[1] "0.1 - 9.0 (1.2)"  "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-F1-6874 
"TPTE WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-F1-6874 
"TPTE WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-F1-6874 
"TPTE WILD-TYPE" 
[1] "hr=" "2.5"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      8    8
  TPTE WILD-TYPE   45   71
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  FEMALE            8             45
  MALE              8             71
D37V4, multiclass
D37V5, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  T1            0              4
  T2            4             42
  T3            5             41
  T4            4             11
D37V6, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  N0            6             29
  N1            6             41
  N2            1             19
  N3            1             11
D37V7, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  M0           13            102
  M1            2             11
  MX            1              3
D37V8, multiclass
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  I              2             16
  II             4             28
  III            4             29
  IV             3             18
D37V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      1   15
  TPTE WILD-TYPE    7  109
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  NO             1              7
  YES           15            109

Clustering(38) Variable = FSHR MUTATION ANALYSIS
D38V1, survival
                sevent
clus2             0  1
  FSHR MUTATED    7  2
  FSHR WILD-TYPE 64 12
  FSHR MUTATED FSHR WILD-TYPE 
             9             76 
  FSHR MUTATED FSHR WILD-TYPE 
             2             12 
$`FSHR MUTATED`
TCGA-CG-4437 TCGA-CG-4460 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5730 
        8.05        21.99         5.98        70.06        28.96         4.01 
TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6526 
       55.04         3.58         6.61 

$`FSHR WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
       52.96        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       19.07        12.03         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 
        1.02         0.99         0.95        12.03        15.02        31.04 
TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 
       65.10        21.07         7.99         8.65         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  FSHR MUTATED FSHR WILD-TYPE 
          3.58           0.07 
  FSHR MUTATED FSHR WILD-TYPE 
         70.06          65.10 
  FSHR MUTATED FSHR WILD-TYPE 
         8.050          2.975 
[1] "3.6 - 70.1 (8.1)" "0.1 - 65.1 (3.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE"   "FSHR MUTATED" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE"   "FSHR MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "FSHR MUTATED" "FSHR WILD-TYPE"   "FSHR MUTATED" "FSHR WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"FSHR WILD-TYPE"   "FSHR MUTATED" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "FSHR MUTATED"   "FSHR MUTATED" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"FSHR WILD-TYPE"   "FSHR MUTATED" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"FSHR WILD-TYPE" "FSHR WILD-TYPE"   "FSHR MUTATED" "FSHR WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-F1-6874 
"FSHR WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE"   "FSHR MUTATED" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE"   "FSHR MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "FSHR MUTATED" "FSHR WILD-TYPE"   "FSHR MUTATED" "FSHR WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"FSHR WILD-TYPE"   "FSHR MUTATED" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "FSHR MUTATED"   "FSHR MUTATED" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"FSHR WILD-TYPE"   "FSHR MUTATED" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"FSHR WILD-TYPE" "FSHR WILD-TYPE"   "FSHR MUTATED" "FSHR WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-F1-6874 
"FSHR WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE"   "FSHR MUTATED" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE"   "FSHR MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "FSHR MUTATED" "FSHR WILD-TYPE"   "FSHR MUTATED" "FSHR WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"FSHR WILD-TYPE"   "FSHR MUTATED" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "FSHR MUTATED"   "FSHR MUTATED" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"FSHR WILD-TYPE"   "FSHR MUTATED" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"FSHR WILD-TYPE" "FSHR WILD-TYPE"   "FSHR MUTATED" "FSHR WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" "FSHR WILD-TYPE" 
    TCGA-F1-6874 
"FSHR WILD-TYPE" 
[1] "hr=" "1.6"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FSHR MUTATED      7    7
  FSHR WILD-TYPE   46   72
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  FEMALE            7             46
  MALE              7             72
D38V4, multiclass
D38V5, multiclass
    clus
vv   FSHR MUTATED FSHR WILD-TYPE
  T1            2              2
  T2            5             41
  T3            3             43
  T4            3             12
D38V6, multiclass
    clus
vv   FSHR MUTATED FSHR WILD-TYPE
  N0            2             33
  N1            7             40
  N2            2             18
  N3            1             11
D38V7, multiclass
    clus
vv   FSHR MUTATED FSHR WILD-TYPE
  M0           12            103
  M1            2             11
  MX            0              4
D38V8, multiclass
     clus
vv    FSHR MUTATED FSHR WILD-TYPE
  I              1             17
  II             3             29
  III            3             30
  IV             4             17
D38V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FSHR MUTATED      1   13
  FSHR WILD-TYPE    7  111
     clus
vv    FSHR MUTATED FSHR WILD-TYPE
  NO             1              7
  YES           13            111

Clustering(39) Variable = UNC93B1 MUTATION ANALYSIS
D39V1, survival
                   sevent
clus2                0  1
  UNC93B1 MUTATED    1  1
  UNC93B1 WILD-TYPE 70 13
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
                2                83 
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
                1                13 
$`UNC93B1 MUTATED`
TCGA-CG-5733 TCGA-D7-5578 
       21.07         3.58 

$`UNC93B1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 
        4.01        55.04         7.99         8.65         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
             3.58              0.07 
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
            21.07             70.06 
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
           12.325             4.010 
[1] "3.6 - 21.1 (12.3)" "0.1 - 70.1 (4.0)" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE"   "UNC93B1 MUTATED" "UNC93B1 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"UNC93B1 WILD-TYPE"   "UNC93B1 MUTATED" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-F1-6874 
"UNC93B1 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE"   "UNC93B1 MUTATED" "UNC93B1 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"UNC93B1 WILD-TYPE"   "UNC93B1 MUTATED" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-F1-6874 
"UNC93B1 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE"   "UNC93B1 MUTATED" "UNC93B1 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"UNC93B1 WILD-TYPE"   "UNC93B1 MUTATED" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-F1-6874 
"UNC93B1 WILD-TYPE" 
[1] "Remove cluster labels:" "UNC93B1 MUTATED"       
clus
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
                2                83 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5734        TCGA-D7-5577 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-EQ-5647        TCGA-F1-6177        TCGA-F1-6874 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
D39V2, continuous
D39V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UNC93B1 MUTATED      2    1
  UNC93B1 WILD-TYPE   51   78
        clus
vv       UNC93B1 MUTATED UNC93B1 WILD-TYPE
  FEMALE               2                51
  MALE                 1                78
D39V4, multiclass
D39V5, multiclass
[1] "Remove cluster labels:" "UNC93B1 MUTATED"       
clus
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
                2               109 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-4183        TCGA-BR-4184 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-4190        TCGA-BR-4201        TCGA-BR-4253        TCGA-BR-4255 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-4267        TCGA-BR-4277        TCGA-BR-4278        TCGA-BR-4279 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-4280        TCGA-BR-4292        TCGA-BR-4294        TCGA-BR-4298 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-4357        TCGA-BR-4361        TCGA-BR-4363        TCGA-BR-4368 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-4371        TCGA-BR-4376        TCGA-BR-6452        TCGA-BR-6453 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6709 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5813 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4442        TCGA-CG-4443 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4475        TCGA-CG-4476 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4477        TCGA-CG-5716        TCGA-CG-5717        TCGA-CG-5718 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725        TCGA-CG-5726 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5579        TCGA-D7-6518 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-F1-6874 
"UNC93B1 WILD-TYPE" 
D39V6, multiclass
    clus
vv   UNC93B1 MUTATED UNC93B1 WILD-TYPE
  N0               0                35
  N1               1                46
  N2               2                18
  N3               0                12
D39V7, multiclass
    clus
vv   UNC93B1 MUTATED UNC93B1 WILD-TYPE
  M0               3               112
  M1               0                13
  MX               0                 4
D39V8, multiclass
[1] "Remove cluster labels:" "UNC93B1 MUTATED"       
clus
  UNC93B1 MUTATED UNC93B1 WILD-TYPE 
                2               102 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-4183        TCGA-BR-4184 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-4190        TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4267 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-4278        TCGA-BR-4279        TCGA-BR-4280        TCGA-BR-4298 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-4361        TCGA-BR-4368        TCGA-BR-4376        TCGA-BR-6452 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6453        TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4442 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4443        TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4460        TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4469        TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4475 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-4476        TCGA-CG-4477        TCGA-CG-5716        TCGA-CG-5717 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5579 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
       TCGA-F1-6177        TCGA-F1-6874 
"UNC93B1 WILD-TYPE" "UNC93B1 WILD-TYPE" 
D39V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UNC93B1 MUTATED      0    3
  UNC93B1 WILD-TYPE    8  121
     clus
vv    UNC93B1 MUTATED UNC93B1 WILD-TYPE
  NO                0                 8
  YES               3               121

Clustering(40) Variable = EDNRB MUTATION ANALYSIS
D40V1, survival
                 sevent
clus2              0  1
  EDNRB MUTATED    6  1
  EDNRB WILD-TYPE 65 13
  EDNRB MUTATED EDNRB WILD-TYPE 
              7              78 
  EDNRB MUTATED EDNRB WILD-TYPE 
              1              13 
$`EDNRB MUTATED`
TCGA-BR-6452 TCGA-CD-5800 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-5721 
        0.95         0.36        12.03        18.94        12.00         5.98 
TCGA-CG-5724 
       12.03 

$`EDNRB WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.69         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 
       21.99         1.02         8.98         7.07         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 

  EDNRB MUTATED EDNRB WILD-TYPE 
           0.36            0.07 
  EDNRB MUTATED EDNRB WILD-TYPE 
          18.94           70.06 
  EDNRB MUTATED EDNRB WILD-TYPE 
          12.00            3.83 
[1] "0.4 - 18.9 (12.0)" "0.1 - 70.1 (3.8)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-F1-6874 
"EDNRB WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-F1-6874 
"EDNRB WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-F1-6874 
"EDNRB WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDNRB MUTATED      6    6
  EDNRB WILD-TYPE   47   73
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  FEMALE             6              47
  MALE               6              73
D40V4, multiclass
D40V5, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  T1             1               3
  T2             3              43
  T3             4              42
  T4             3              12
D40V6, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  N0             4              31
  N1             6              41
  N2             0              20
  N3             1              11
D40V7, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  M0            10             105
  M1             1              12
  MX             1               3
D40V8, multiclass
     clus
vv    EDNRB MUTATED EDNRB WILD-TYPE
  I               1              17
  II              3              29
  III             3              30
  IV              3              18
D40V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDNRB MUTATED      0   12
  EDNRB WILD-TYPE    8  112
     clus
vv    EDNRB MUTATED EDNRB WILD-TYPE
  NO              0               8
  YES            12             112

Clustering(41) Variable = RASA1 MUTATION ANALYSIS
D41V1, survival
                 sevent
clus2              0  1
  RASA1 MUTATED    4  3
  RASA1 WILD-TYPE 67 11
  RASA1 MUTATED RASA1 WILD-TYPE 
              7              78 
  RASA1 MUTATED RASA1 WILD-TYPE 
              3              11 
$`RASA1 MUTATED`
TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4460 TCGA-CG-5726 TCGA-D7-6527 
        3.02        15.95         1.02        21.99        28.96         4.14 
TCGA-D7-6815 
        3.65 

$`RASA1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        0.39        20.02        27.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 
        5.98         0.95        70.06        12.03        15.02        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 
        6.90         0.69         5.95         6.61         1.68         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 

  RASA1 MUTATED RASA1 WILD-TYPE 
           1.02            0.07 
  RASA1 MUTATED RASA1 WILD-TYPE 
          28.96           70.06 
  RASA1 MUTATED RASA1 WILD-TYPE 
           4.14            4.01 
[1] "1.0 - 29.0 (4.1)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "RASA1 MUTATED"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-F1-6874 
"RASA1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "RASA1 MUTATED"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-F1-6874 
"RASA1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "RASA1 MUTATED"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE"   "RASA1 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RASA1 WILD-TYPE"   "RASA1 MUTATED" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" "RASA1 WILD-TYPE" 
     TCGA-F1-6874 
"RASA1 WILD-TYPE" 
[1] "hr=" "1.9"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RASA1 MUTATED      4    6
  RASA1 WILD-TYPE   49   73
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  FEMALE             4              49
  MALE               6              73
D41V4, multiclass
D41V5, multiclass
    clus
vv   RASA1 MUTATED RASA1 WILD-TYPE
  T1             2               2
  T2             4              42
  T3             1              45
  T4             2              13
D41V6, multiclass
    clus
vv   RASA1 MUTATED RASA1 WILD-TYPE
  N0             2              33
  N1             5              42
  N2             2              18
  N3             0              12
D41V7, multiclass
    clus
vv   RASA1 MUTATED RASA1 WILD-TYPE
  M0             7             108
  M1             3              10
  MX             0               4
D41V8, multiclass
     clus
vv    RASA1 MUTATED RASA1 WILD-TYPE
  I               2              16
  II              2              30
  III             1              32
  IV              3              18
D41V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RASA1 MUTATED      1    9
  RASA1 WILD-TYPE    7  115
     clus
vv    RASA1 MUTATED RASA1 WILD-TYPE
  NO              1               7
  YES             9             115

Clustering(42) Variable = KDM4B MUTATION ANALYSIS
D42V1, survival
                 sevent
clus2              0  1
  KDM4B MUTATED    3  2
  KDM4B WILD-TYPE 68 12
  KDM4B MUTATED KDM4B WILD-TYPE 
              5              80 
  KDM4B MUTATED KDM4B WILD-TYPE 
              2              12 
$`KDM4B MUTATED`
TCGA-BR-6452 TCGA-CG-4460 TCGA-CG-5721 TCGA-CG-5728 TCGA-CG-5733 
        0.95        21.99         5.98        65.10        21.07 

$`KDM4B WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       19.07        12.03         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 
       28.96        31.04         4.01        55.04         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6177 TCGA-F1-6874 
        6.54         2.01 

  KDM4B MUTATED KDM4B WILD-TYPE 
           0.95            0.07 
  KDM4B MUTATED KDM4B WILD-TYPE 
          65.10           70.06 
  KDM4B MUTATED KDM4B WILD-TYPE 
          21.07            3.83 
[1] "0.9 - 65.1 (21.1)" "0.1 - 70.1 (3.8)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" "KDM4B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "KDM4B MUTATED" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" "KDM4B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-F1-6874 
"KDM4B WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" "KDM4B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "KDM4B MUTATED" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" "KDM4B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-F1-6874 
"KDM4B WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" "KDM4B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "KDM4B MUTATED" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE"   "KDM4B MUTATED" "KDM4B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" "KDM4B WILD-TYPE" 
     TCGA-F1-6874 
"KDM4B WILD-TYPE" 
[1] "hr=" "1.2"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM4B MUTATED      8    3
  KDM4B WILD-TYPE   45   76
        clus
vv       KDM4B MUTATED KDM4B WILD-TYPE
  FEMALE             8              45
  MALE               3              76
D42V4, multiclass
D42V5, multiclass
    clus
vv   KDM4B MUTATED KDM4B WILD-TYPE
  T1             1               3
  T2             3              43
  T3             3              43
  T4             3              12
D42V6, multiclass
    clus
vv   KDM4B MUTATED KDM4B WILD-TYPE
  N0             2              33
  N1             4              43
  N2             2              18
  N3             0              12
D42V7, multiclass
    clus
vv   KDM4B MUTATED KDM4B WILD-TYPE
  M0             9             106
  M1             1              12
  MX             1               3
D42V8, multiclass
     clus
vv    KDM4B MUTATED KDM4B WILD-TYPE
  I               1              17
  II              1              31
  III             3              30
  IV              3              18
D42V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM4B MUTATED      0   11
  KDM4B WILD-TYPE    8  113
     clus
vv    KDM4B MUTATED KDM4B WILD-TYPE
  NO              0               8
  YES            11             113

Clustering(43) Variable = LHCGR MUTATION ANALYSIS
D43V1, survival
                 sevent
clus2              0  1
  LHCGR MUTATED    3  1
  LHCGR WILD-TYPE 68 13
  LHCGR MUTATED LHCGR WILD-TYPE 
              4              81 
  LHCGR MUTATED LHCGR WILD-TYPE 
              1              13 
$`LHCGR MUTATED`
TCGA-B7-5816 TCGA-CG-5726 TCGA-D7-5579 TCGA-D7-6817 
        5.62        28.96         4.54         4.70 

$`LHCGR WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 
       21.07         7.99         8.65         3.58         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        4.14         1.68         3.65         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  LHCGR MUTATED LHCGR WILD-TYPE 
           4.54            0.07 
  LHCGR MUTATED LHCGR WILD-TYPE 
          28.96           70.06 
  LHCGR MUTATED LHCGR WILD-TYPE 
           5.16            3.65 
[1] "4.5 - 29.0 (5.2)" "0.1 - 70.1 (3.6)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "LHCGR MUTATED" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-F1-6874 
"LHCGR WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "LHCGR MUTATED" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-F1-6874 
"LHCGR WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "LHCGR MUTATED" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE"   "LHCGR MUTATED" "LHCGR WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" "LHCGR WILD-TYPE" 
     TCGA-F1-6874 
"LHCGR WILD-TYPE" 
[1] "hr=" "1.2"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LHCGR MUTATED      3    4
  LHCGR WILD-TYPE   50   75
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  FEMALE             3              50
  MALE               4              75
D43V4, multiclass
D43V5, multiclass
    clus
vv   LHCGR MUTATED LHCGR WILD-TYPE
  T1             1               3
  T2             1              45
  T3             2              44
  T4             2              13
D43V6, multiclass
    clus
vv   LHCGR MUTATED LHCGR WILD-TYPE
  N0             2              33
  N1             1              46
  N2             2              18
  N3             1              11
D43V7, multiclass
    clus
vv   LHCGR MUTATED LHCGR WILD-TYPE
  M0             6             109
  M1             0              13
  MX             1               3
D43V8, multiclass
     clus
vv    LHCGR MUTATED LHCGR WILD-TYPE
  I               1              17
  II              1              31
  III             2              31
  IV              1              20
D43V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LHCGR MUTATED      1    6
  LHCGR WILD-TYPE    7  118
     clus
vv    LHCGR MUTATED LHCGR WILD-TYPE
  NO              1               7
  YES             6             118

Clustering(44) Variable = TLR4 MUTATION ANALYSIS
D44V1, survival
                sevent
clus2             0  1
  TLR4 MUTATED    6  2
  TLR4 WILD-TYPE 65 12
  TLR4 MUTATED TLR4 WILD-TYPE 
             8             77 
  TLR4 MUTATED TLR4 WILD-TYPE 
             2             12 
$`TLR4 MUTATED`
TCGA-BR-6452 TCGA-BR-6706 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-5724 TCGA-D7-6526 
        0.95         2.17        18.94         7.07        12.03         6.61 
TCGA-D7-6527 TCGA-D7-6822 
        4.14         4.27 

$`TLR4 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         0.62         1.71         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
        1.12         0.76         0.66         0.26         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 TCGA-CG-4474 
       12.03        21.99         1.02         8.98        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        5.98         0.95        70.06        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        6.90         0.69         5.95         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         0.62         6.54         2.01 

  TLR4 MUTATED TLR4 WILD-TYPE 
          0.95           0.07 
  TLR4 MUTATED TLR4 WILD-TYPE 
         18.94          70.06 
  TLR4 MUTATED TLR4 WILD-TYPE 
          5.44           3.65 
[1] "0.9 - 18.9 (5.4)" "0.1 - 70.1 (3.6)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-F1-6874 
"TLR4 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-F1-6874 
"TLR4 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-F1-6874 
"TLR4 WILD-TYPE" 
[1] "hr=" "2.2"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR4 MUTATED      4    9
  TLR4 WILD-TYPE   49   70
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  FEMALE            4             49
  MALE              9             70
D44V4, multiclass
D44V5, multiclass
    clus
vv   TLR4 MUTATED TLR4 WILD-TYPE
  T1            0              4
  T2            4             42
  T3            7             39
  T4            0             15
D44V6, multiclass
    clus
vv   TLR4 MUTATED TLR4 WILD-TYPE
  N0            3             32
  N1            6             41
  N2            1             19
  N3            2             10
D44V7, multiclass
    clus
vv   TLR4 MUTATED TLR4 WILD-TYPE
  M0           11            104
  M1            1             12
  MX            1              3
D44V8, multiclass
     clus
vv    TLR4 MUTATED TLR4 WILD-TYPE
  I              2             16
  II             3             29
  III            4             29
  IV             2             19
D44V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR4 MUTATED      2   11
  TLR4 WILD-TYPE    6  113
     clus
vv    TLR4 MUTATED TLR4 WILD-TYPE
  NO             2              6
  YES           11            113

Clustering(45) Variable = TM7SF4 MUTATION ANALYSIS
D45V1, survival
                  sevent
clus2               0  1
  TM7SF4 MUTATED    5  1
  TM7SF4 WILD-TYPE 66 13
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               6               79 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               1               13 
$`TM7SF4 MUTATED`
TCGA-CD-5801 TCGA-CG-4472 TCGA-CG-5723 TCGA-CG-5734 TCGA-D7-6528 TCGA-F1-6874 
        0.49        12.00        70.06         7.99         1.68         2.01 

$`TM7SF4 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.82         0.69         0.36         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         5.98         0.95        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6177 
        6.54 

  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
            0.49             0.07 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
           70.06            65.10 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
            5.00             4.01 
[1] "0.5 - 70.1 (5.0)" "0.1 - 65.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F1-6874 
  "TM7SF4 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F1-6874 
  "TM7SF4 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F1-6874 
  "TM7SF4 MUTATED" 
[1] "hr=" "1.1"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TM7SF4 MUTATED      3    5
  TM7SF4 WILD-TYPE   50   74
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  FEMALE              3               50
  MALE                5               74
D45V4, multiclass
D45V5, multiclass
    clus
vv   TM7SF4 MUTATED TM7SF4 WILD-TYPE
  T1              0                4
  T2              3               43
  T3              3               43
  T4              2               13
D45V6, multiclass
    clus
vv   TM7SF4 MUTATED TM7SF4 WILD-TYPE
  N0              2               33
  N1              4               43
  N2              2               18
  N3              0               12
D45V7, multiclass
    clus
vv   TM7SF4 MUTATED TM7SF4 WILD-TYPE
  M0              8              107
  M1              0               13
  MX              0                4
D45V8, multiclass
     clus
vv    TM7SF4 MUTATED TM7SF4 WILD-TYPE
  I                2               16
  II               1               31
  III              3               30
  IV               2               19
D45V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TM7SF4 MUTATED      0    8
  TM7SF4 WILD-TYPE    8  116
     clus
vv    TM7SF4 MUTATED TM7SF4 WILD-TYPE
  NO               0                8
  YES              8              116

Clustering(46) Variable = IL2RG MUTATION ANALYSIS
D46V1, survival
                 sevent
clus2              0  1
  IL2RG MUTATED    2  0
  IL2RG WILD-TYPE 69 14
  IL2RG MUTATED IL2RG WILD-TYPE 
              2              83 
  IL2RG MUTATED IL2RG WILD-TYPE 
              0              14 
$`IL2RG MUTATED`
TCGA-BR-6452 TCGA-CG-5728 
        0.95        65.10 

$`IL2RG WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        28.96        31.04         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  IL2RG MUTATED IL2RG WILD-TYPE 
           0.95            0.07 
  IL2RG MUTATED IL2RG WILD-TYPE 
          65.10           70.06 
  IL2RG MUTATED IL2RG WILD-TYPE 
         33.025           4.010 
[1] "0.9 - 65.1 (33.0)" "0.1 - 70.1 (4.0)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE"   "IL2RG MUTATED" "IL2RG WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE"   "IL2RG MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-F1-6874 
"IL2RG WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE"   "IL2RG MUTATED" "IL2RG WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE"   "IL2RG MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-F1-6874 
"IL2RG WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE"   "IL2RG MUTATED" "IL2RG WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE"   "IL2RG MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-F1-6874 
"IL2RG WILD-TYPE" 
[1] "Remove cluster labels:" "IL2RG MUTATED"         
clus
  IL2RG MUTATED IL2RG WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6455      TCGA-BR-6457 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5730      TCGA-CG-5732 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
D46V2, continuous
D46V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IL2RG MUTATED      3    0
  IL2RG WILD-TYPE   50   79
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  FEMALE             3              50
  MALE               0              79
D46V4, multiclass
D46V5, multiclass
    clus
vv   IL2RG MUTATED IL2RG WILD-TYPE
  T1             0               4
  T2             1              45
  T3             2              44
  T4             0              15
D46V6, multiclass
[1] "Remove cluster labels:" "IL2RG MUTATED"         
clus
  IL2RG MUTATED IL2RG WILD-TYPE 
              2             112 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-4188      TCGA-BR-4190      TCGA-BR-4191      TCGA-BR-4195 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-4199      TCGA-BR-4200      TCGA-BR-4253      TCGA-BR-4255 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-4256      TCGA-BR-4261      TCGA-BR-4267      TCGA-BR-4278 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4281      TCGA-BR-4298 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-4361      TCGA-BR-4362      TCGA-BR-4367      TCGA-BR-4368 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-4376      TCGA-BR-6453      TCGA-BR-6454      TCGA-BR-6455 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6707      TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462      TCGA-CG-4465 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472      TCGA-CG-4474 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5730 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
D46V7, multiclass
    clus
vv   IL2RG MUTATED IL2RG WILD-TYPE
  M0             2             113
  M1             0              13
  MX             1               3
D46V8, multiclass
[1] "Remove cluster labels:" "IL2RG MUTATED"         
clus
  IL2RG MUTATED IL2RG WILD-TYPE 
              2             102 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-4190      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4267 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-4278      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4298 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-4361      TCGA-BR-4368      TCGA-BR-4376      TCGA-BR-6453 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4442      TCGA-CG-4443 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874 
"IL2RG WILD-TYPE" "IL2RG WILD-TYPE" 
D46V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IL2RG MUTATED      0    3
  IL2RG WILD-TYPE    8  121
     clus
vv    IL2RG MUTATED IL2RG WILD-TYPE
  NO              0               8
  YES             3             121

Clustering(47) Variable = PDZRN4 MUTATION ANALYSIS
D47V1, survival
                  sevent
clus2               0  1
  PDZRN4 MUTATED    6  2
  PDZRN4 WILD-TYPE 65 12
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               8               77 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               2               12 
$`PDZRN4 MUTATED`
TCGA-BR-6452 TCGA-CD-5801 TCGA-CG-4440 TCGA-CG-5726 TCGA-CG-5732 TCGA-D7-5579 
        0.95         0.49         4.01        28.96        55.04         4.54 
TCGA-D7-6522 TCGA-D7-6815 
        6.90         3.65 

$`PDZRN4 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.69         0.36         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
       54.05        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10         4.01        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6524 
        3.58         9.80        15.65         9.63         8.19         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 
        5.95         6.61         4.14         1.68         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
            0.49             0.07 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
           55.04            70.06 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
           4.275            4.010 
[1] "0.5 - 55.0 (4.3)" "0.1 - 70.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-F1-6874 
"PDZRN4 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-F1-6874 
"PDZRN4 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-F1-6874 
"PDZRN4 WILD-TYPE" 
[1] "hr=" "1.3"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      3    9
  PDZRN4 WILD-TYPE   50   70
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  FEMALE              3               50
  MALE                9               70
D47V4, multiclass
D47V5, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  T1              1                3
  T2              3               43
  T3              7               39
  T4              0               15
D47V6, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  N0              3               32
  N1              4               43
  N2              2               18
  N3              2               10
D47V7, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  M0              9              106
  M1              1               12
  MX              2                2
D47V8, multiclass
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  I                2               16
  II               2               30
  III              4               29
  IV               2               19
D47V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      1   11
  PDZRN4 WILD-TYPE    7  113
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  NO               1                7
  YES             11              113

Clustering(48) Variable = TSHZ2 MUTATION ANALYSIS
D48V1, survival
                 sevent
clus2              0  1
  TSHZ2 MUTATED    5  2
  TSHZ2 WILD-TYPE 66 12
  TSHZ2 MUTATED TSHZ2 WILD-TYPE 
              7              78 
  TSHZ2 MUTATED TSHZ2 WILD-TYPE 
              2              12 
$`TSHZ2 MUTATED`
TCGA-BR-6707 TCGA-BR-6852 TCGA-CG-4440 TCGA-CG-5721 TCGA-CG-5732 TCGA-D7-6528 
        0.99         0.26         4.01         5.98        55.04         1.68 
TCGA-EQ-5647 
        0.62 

$`TSHZ2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 
        0.82         0.62         0.62         1.71         2.17         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
       54.05        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        0.99         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10         4.01        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 
        6.90         0.69         5.95         6.61         4.14         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-F1-6177 TCGA-F1-6874 
        4.70         4.04         2.93         4.27         6.54         2.01 

  TSHZ2 MUTATED TSHZ2 WILD-TYPE 
           0.26            0.07 
  TSHZ2 MUTATED TSHZ2 WILD-TYPE 
          55.04           70.06 
  TSHZ2 MUTATED TSHZ2 WILD-TYPE 
           1.68            4.09 
[1] "0.3 - 55.0 (1.7)" "0.1 - 70.1 (4.1)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" 
     TCGA-F1-6874 
"TSHZ2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" 
     TCGA-F1-6874 
"TSHZ2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TSHZ2 WILD-TYPE" "TSHZ2 WILD-TYPE"   "TSHZ2 MUTATED" "TSHZ2 WILD-TYPE" 
     TCGA-F1-6874 
"TSHZ2 WILD-TYPE" 
[1] "hr=" "2.6"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TSHZ2 MUTATED      4    3
  TSHZ2 WILD-TYPE   49   76
        clus
vv       TSHZ2 MUTATED TSHZ2 WILD-TYPE
  FEMALE             4              49
  MALE               3              76
D48V4, multiclass
D48V5, multiclass
    clus
vv   TSHZ2 MUTATED TSHZ2 WILD-TYPE
  T1             0               4
  T2             2              44
  T3             3              43
  T4             2              13
D48V6, multiclass
    clus
vv   TSHZ2 MUTATED TSHZ2 WILD-TYPE
  N0             3              32
  N1             1              46
  N2             0              20
  N3             3               9
D48V7, multiclass
    clus
vv   TSHZ2 MUTATED TSHZ2 WILD-TYPE
  M0             5             110
  M1             2              11
  MX             0               4
D48V8, multiclass
     clus
vv    TSHZ2 MUTATED TSHZ2 WILD-TYPE
  I               1              17
  II              2              30
  III             0              33
  IV              4              17
D48V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TSHZ2 MUTATED      0    7
  TSHZ2 WILD-TYPE    8  117
     clus
vv    TSHZ2 MUTATED TSHZ2 WILD-TYPE
  NO              0               8
  YES             7             117

Clustering(49) Variable = POM121L12 MUTATION ANALYSIS
D49V1, survival
                     sevent
clus2                  0  1
  POM121L12 MUTATED    4  1
  POM121L12 WILD-TYPE 67 13
  POM121L12 MUTATED POM121L12 WILD-TYPE 
                  5                  80 
  POM121L12 MUTATED POM121L12 WILD-TYPE 
                  1                  13 
$`POM121L12 MUTATED`
TCGA-CD-5798 TCGA-CD-5801 TCGA-CG-4465 TCGA-CG-5721 TCGA-CG-5723 
        0.82         0.49         8.98         5.98        70.06 

$`POM121L12 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.69         0.36         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03        21.99         1.02        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        0.99         0.95        12.03        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6177 TCGA-F1-6874 
        6.54         2.01 

  POM121L12 MUTATED POM121L12 WILD-TYPE 
               0.49                0.07 
  POM121L12 MUTATED POM121L12 WILD-TYPE 
              70.06               65.10 
  POM121L12 MUTATED POM121L12 WILD-TYPE 
               5.98                4.01 
[1] "0.5 - 70.1 (6.0)" "0.1 - 65.1 (4.0)"
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4460          TCGA-CG-4462          TCGA-CG-4465 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE"   "POM121L12 MUTATED" 
         TCGA-CG-4466          TCGA-CG-4469          TCGA-CG-4472 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4474          TCGA-CG-4477          TCGA-CG-5716 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"POM121L12 WILD-TYPE"   "POM121L12 MUTATED" "POM121L12 WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-F1-6874 
"POM121L12 WILD-TYPE" 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4460          TCGA-CG-4462          TCGA-CG-4465 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE"   "POM121L12 MUTATED" 
         TCGA-CG-4466          TCGA-CG-4469          TCGA-CG-4472 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4474          TCGA-CG-4477          TCGA-CG-5716 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"POM121L12 WILD-TYPE"   "POM121L12 MUTATED" "POM121L12 WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-F1-6874 
"POM121L12 WILD-TYPE" 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4460          TCGA-CG-4462          TCGA-CG-4465 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE"   "POM121L12 MUTATED" 
         TCGA-CG-4466          TCGA-CG-4469          TCGA-CG-4472 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-4474          TCGA-CG-4477          TCGA-CG-5716 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"POM121L12 WILD-TYPE"   "POM121L12 MUTATED" "POM121L12 WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
  "POM121L12 MUTATED" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" "POM121L12 WILD-TYPE" 
         TCGA-F1-6874 
"POM121L12 WILD-TYPE" 
[1] "hr=" "1.1"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  POM121L12 MUTATED      4    4
  POM121L12 WILD-TYPE   49   75
        clus
vv       POM121L12 MUTATED POM121L12 WILD-TYPE
  FEMALE                 4                  49
  MALE                   4                  75
D49V4, multiclass
D49V5, multiclass
    clus
vv   POM121L12 MUTATED POM121L12 WILD-TYPE
  T1                 0                   4
  T2                 1                  45
  T3                 3                  43
  T4                 3                  12
D49V6, multiclass
    clus
vv   POM121L12 MUTATED POM121L12 WILD-TYPE
  N0                 1                  34
  N1                 3                  44
  N2                 1                  19
  N3                 1                  11
D49V7, multiclass
    clus
vv   POM121L12 MUTATED POM121L12 WILD-TYPE
  M0                 6                 109
  M1                 1                  12
  MX                 1                   3
D49V8, multiclass
     clus
vv    POM121L12 MUTATED POM121L12 WILD-TYPE
  I                   0                  18
  II                  2                  30
  III                 1                  32
  IV                  3                  18
D49V9, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  POM121L12 MUTATED      0    8
  POM121L12 WILD-TYPE    8  116
     clus
vv    POM121L12 MUTATED POM121L12 WILD-TYPE
  NO                  0                   8
  YES                 8                 116

Clustering(50) Variable = WBSCR17 MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                0  1
  WBSCR17 MUTATED    4  4
  WBSCR17 WILD-TYPE 67 10
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                8                77 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                4                10 
$`WBSCR17 MUTATED`
TCGA-BR-6452 TCGA-BR-6458 TCGA-CG-4306 TCGA-CG-4440 TCGA-CG-5721 TCGA-CG-5726 
        0.95         1.35         1.02         4.01         5.98        28.96 
TCGA-CG-5728 TCGA-CG-5733 
       65.10        21.07 

$`WBSCR17 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6564 TCGA-BR-6565 
        5.62         0.10         1.41         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
        1.12         0.76         0.66         0.26         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02        15.95        52.96         8.05        54.05 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5730 
        0.95        70.06        12.03        15.02        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       55.04         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
             0.95              0.07 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
            65.10             70.06 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
            4.995             4.010 
[1] "0.9 - 65.1 (5.0)" "0.1 - 70.1 (4.0)"
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-F1-6874 
"WBSCR17 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-F1-6874 
"WBSCR17 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-F1-6874 
"WBSCR17 WILD-TYPE" 
[1] "hr=" "2.5"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED      6    6
  WBSCR17 WILD-TYPE   47   73
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  FEMALE               6                47
  MALE                 6                73
D50V4, multiclass
D50V5, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  T1               1                 3
  T2               3                43
  T3               5                41
  T4               1                14
D50V6, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  N0               3                32
  N1               5                42
  N2               2                18
  N3               1                11
D50V7, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  M0               9               106
  M1               2                11
  MX               1                 3
D50V8, multiclass
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  I                 2                16
  II                3                29
  III               2                31
  IV                3                18
D50V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED      0   12
  WBSCR17 WILD-TYPE    8  112
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  NO                0                 8
  YES              12               112

Clustering(51) Variable = ZC4H2 MUTATION ANALYSIS
D51V1, survival
                 sevent
clus2              0  1
  ZC4H2 MUTATED    2  2
  ZC4H2 WILD-TYPE 69 12
  ZC4H2 MUTATED ZC4H2 WILD-TYPE 
              4              81 
  ZC4H2 MUTATED ZC4H2 WILD-TYPE 
              2              12 
$`ZC4H2 MUTATED`
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4460 TCGA-CG-5721 
       15.95         1.02        21.99         5.98 

$`ZC4H2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 
        0.39        20.02         3.02        27.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        0.99         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  ZC4H2 MUTATED ZC4H2 WILD-TYPE 
           1.02            0.07 
  ZC4H2 MUTATED ZC4H2 WILD-TYPE 
          21.99           70.06 
  ZC4H2 MUTATED ZC4H2 WILD-TYPE 
         10.965           4.010 
[1] "1.0 - 22.0 (11.0)" "0.1 - 70.1 (4.0)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "ZC4H2 MUTATED"   "ZC4H2 MUTATED" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE"   "ZC4H2 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "ZC4H2 MUTATED" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-F1-6874 
"ZC4H2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "ZC4H2 MUTATED"   "ZC4H2 MUTATED" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE"   "ZC4H2 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "ZC4H2 MUTATED" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-F1-6874 
"ZC4H2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "ZC4H2 MUTATED"   "ZC4H2 MUTATED" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE"   "ZC4H2 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "ZC4H2 MUTATED" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" "ZC4H2 WILD-TYPE" 
     TCGA-F1-6874 
"ZC4H2 WILD-TYPE" 
[1] "hr=" "2.2"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZC4H2 MUTATED      2    4
  ZC4H2 WILD-TYPE   51   75
        clus
vv       ZC4H2 MUTATED ZC4H2 WILD-TYPE
  FEMALE             2              51
  MALE               4              75
D51V4, multiclass
D51V5, multiclass
    clus
vv   ZC4H2 MUTATED ZC4H2 WILD-TYPE
  T1             0               4
  T2             1              45
  T3             1              45
  T4             2              13
D51V6, multiclass
    clus
vv   ZC4H2 MUTATED ZC4H2 WILD-TYPE
  N0             0              35
  N1             5              42
  N2             1              19
  N3             0              12
D51V7, multiclass
    clus
vv   ZC4H2 MUTATED ZC4H2 WILD-TYPE
  M0             4             111
  M1             2              11
  MX             0               4
D51V8, multiclass
     clus
vv    ZC4H2 MUTATED ZC4H2 WILD-TYPE
  I               0              18
  II              1              31
  III             0              33
  IV              3              18
D51V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZC4H2 MUTATED      0    6
  ZC4H2 WILD-TYPE    8  118
     clus
vv    ZC4H2 MUTATED ZC4H2 WILD-TYPE
  NO              0               8
  YES             6             118

Clustering(52) Variable = CNBD1 MUTATION ANALYSIS
D52V1, survival
                 sevent
clus2              0  1
  CNBD1 MUTATED    2  0
  CNBD1 WILD-TYPE 69 14
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              2              83 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              0              14 
$`CNBD1 MUTATED`
TCGA-D7-6519 TCGA-D7-6528 
       15.65         1.68 

$`CNBD1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        4.54         9.80         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        5.95         6.61         4.14         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  CNBD1 MUTATED CNBD1 WILD-TYPE 
           1.68            0.07 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          15.65           70.06 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          8.665           4.010 
[1] "1.7 - 15.7 (8.7)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-F1-6874 
"CNBD1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-F1-6874 
"CNBD1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-F1-6874 
"CNBD1 WILD-TYPE" 
[1] "Remove cluster labels:" "CNBD1 MUTATED"         
clus
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6815 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
D52V2, continuous
D52V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      3    3
  CNBD1 WILD-TYPE   50   76
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  FEMALE             3              50
  MALE               3              76
D52V4, multiclass
D52V5, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  T1             0               4
  T2             2              44
  T3             1              45
  T4             0              15
D52V6, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  N0             1              34
  N1             2              45
  N2             1              19
  N3             0              12
D52V7, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  M0             6             109
  M1             0              13
  MX             0               4
D52V8, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  I               1              17
  II              0              32
  III             2              31
  IV              0              21
D52V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      1    5
  CNBD1 WILD-TYPE    7  119
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  NO              1               7
  YES             5             119

Clustering(53) Variable = KIAA0748 MUTATION ANALYSIS
D53V1, survival
                    sevent
clus2                 0  1
  KIAA0748 MUTATED    4  0
  KIAA0748 WILD-TYPE 67 14
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                 4                 81 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                 0                 14 
$`KIAA0748 MUTATED`
TCGA-BR-6458 TCGA-BR-6852 TCGA-CG-4437 TCGA-CG-5732 
        1.35         0.26         8.05        55.04 

$`KIAA0748 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 
        3.02        27.02        15.95         1.02        52.96        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
              0.26               0.07 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
             55.04              70.06 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
              4.70               4.01 
[1] "0.3 - 55.0 (4.7)" "0.1 - 70.1 (4.0)"
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-F1-6874 
"KIAA0748 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-F1-6874 
"KIAA0748 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-F1-6874 
"KIAA0748 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA0748 MUTATED      3    5
  KIAA0748 WILD-TYPE   50   74
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  FEMALE                3                 50
  MALE                  5                 74
D53V4, multiclass
D53V5, multiclass
    clus
vv   KIAA0748 MUTATED KIAA0748 WILD-TYPE
  T1                0                  4
  T2                4                 42
  T3                2                 44
  T4                0                 15
D53V6, multiclass
    clus
vv   KIAA0748 MUTATED KIAA0748 WILD-TYPE
  N0                2                 33
  N1                5                 42
  N2                0                 20
  N3                1                 11
D53V7, multiclass
    clus
vv   KIAA0748 MUTATED KIAA0748 WILD-TYPE
  M0                8                107
  M1                0                 13
  MX                0                  4
D53V8, multiclass
     clus
vv    KIAA0748 MUTATED KIAA0748 WILD-TYPE
  I                  1                 17
  II                 4                 28
  III                0                 33
  IV                 1                 20
D53V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA0748 MUTATED      0    8
  KIAA0748 WILD-TYPE    8  116
     clus
vv    KIAA0748 MUTATED KIAA0748 WILD-TYPE
  NO                 0                  8
  YES                8                116

Clustering(54) Variable = OR2T6 MUTATION ANALYSIS
D54V1, survival
                 sevent
clus2              0  1
  OR2T6 MUTATED    5  1
  OR2T6 WILD-TYPE 66 13
  OR2T6 MUTATED OR2T6 WILD-TYPE 
              6              79 
  OR2T6 MUTATED OR2T6 WILD-TYPE 
              1              13 
$`OR2T6 MUTATED`
TCGA-BR-6452 TCGA-BR-6458 TCGA-BR-6707 TCGA-CG-4438 TCGA-CG-4465 TCGA-D7-5579 
        0.95         1.35         0.99        54.05         8.98         4.54 

$`OR2T6 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6564 TCGA-BR-6565 
        5.62         0.10         1.41         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.76         0.66         0.26         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 
       27.02        15.95         1.02        52.96         8.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        0.95        70.06        12.03        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        3.58         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  OR2T6 MUTATED OR2T6 WILD-TYPE 
           0.95            0.07 
  OR2T6 MUTATED OR2T6 WILD-TYPE 
          54.05           70.06 
  OR2T6 MUTATED OR2T6 WILD-TYPE 
          2.945           4.010 
[1] "0.9 - 54.0 (2.9)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
  "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-F1-6874 
"OR2T6 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
  "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-F1-6874 
"OR2T6 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
  "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-F1-6874 
"OR2T6 WILD-TYPE" 
[1] "hr=" "1"  
D54V2, continuous
D54V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T6 MUTATED      3    4
  OR2T6 WILD-TYPE   50   75
        clus
vv       OR2T6 MUTATED OR2T6 WILD-TYPE
  FEMALE             3              50
  MALE               4              75
D54V4, multiclass
D54V5, multiclass
    clus
vv   OR2T6 MUTATED OR2T6 WILD-TYPE
  T1             0               4
  T2             0              46
  T3             4              42
  T4             2              13
D54V6, multiclass
    clus
vv   OR2T6 MUTATED OR2T6 WILD-TYPE
  N0             2              33
  N1             1              46
  N2             2              18
  N3             1              11
D54V7, multiclass
    clus
vv   OR2T6 MUTATED OR2T6 WILD-TYPE
  M0             6             109
  M1             1              12
  MX             0               4
D54V8, multiclass
     clus
vv    OR2T6 MUTATED OR2T6 WILD-TYPE
  I               0              18
  II              4              28
  III             0              33
  IV              2              19
D54V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T6 MUTATED      1    6
  OR2T6 WILD-TYPE    7  118
     clus
vv    OR2T6 MUTATED OR2T6 WILD-TYPE
  NO              1               7
  YES             6             118

Clustering(55) Variable = CPS1 MUTATION ANALYSIS
D55V1, survival
                sevent
clus2             0  1
  CPS1 MUTATED    7  1
  CPS1 WILD-TYPE 64 13
  CPS1 MUTATED CPS1 WILD-TYPE 
             8             77 
  CPS1 MUTATED CPS1 WILD-TYPE 
             1             13 
$`CPS1 MUTATED`
TCGA-BR-6452 TCGA-BR-6457 TCGA-BR-6707 TCGA-CG-4444 TCGA-CG-4469 TCGA-CG-4472 
        0.95         1.35         0.99        47.05         7.07        12.00 
TCGA-CG-5721 TCGA-F1-6874 
        5.98         2.01 

$`CPS1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        5.62         0.10         1.41         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.76         0.66         0.26         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
        4.01        14.01        29.98        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        1.02         8.98        18.94         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         1.02         0.99         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.04         2.93         4.27         0.62         6.54 

  CPS1 MUTATED CPS1 WILD-TYPE 
          0.95           0.07 
  CPS1 MUTATED CPS1 WILD-TYPE 
         47.05          70.06 
  CPS1 MUTATED CPS1 WILD-TYPE 
         3.995          4.010 
[1] "0.9 - 47.0 (4.0)" "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-F1-6874 
  "CPS1 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-F1-6874 
  "CPS1 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-F1-6874 
  "CPS1 MUTATED" 
[1] "hr=" "1.2"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CPS1 MUTATED      3   11
  CPS1 WILD-TYPE   50   68
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  FEMALE            3             50
  MALE             11             68
D55V4, multiclass
D55V5, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  T1            0              4
  T2            4             42
  T3            6             40
  T4            3             12
D55V6, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  N0            6             29
  N1            4             43
  N2            1             19
  N3            1             11
D55V7, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  M0           13            102
  M1            0             13
  MX            1              3
D55V8, multiclass
     clus
vv    CPS1 MUTATED CPS1 WILD-TYPE
  I              2             16
  II             3             29
  III            4             29
  IV             3             18
D55V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CPS1 MUTATED      0   14
  CPS1 WILD-TYPE    8  110
     clus
vv    CPS1 MUTATED CPS1 WILD-TYPE
  NO             0              8
  YES           14            110

Clustering(56) Variable = CHRM2 MUTATION ANALYSIS
D56V1, survival
                 sevent
clus2              0  1
  CHRM2 MUTATED    2  0
  CHRM2 WILD-TYPE 69 14
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              2              83 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              0              14 
$`CHRM2 MUTATED`
TCGA-D7-5578 TCGA-D7-6527 
        3.58         4.14 

$`CHRM2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 
        4.01        55.04        21.07         7.99         8.65         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        5.95         6.61         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  CHRM2 MUTATED CHRM2 WILD-TYPE 
           3.58            0.07 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
           4.14           70.06 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
           3.86            4.01 
[1] "3.6 - 4.1 (3.9)"  "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE"   "CHRM2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-F1-6874 
"CHRM2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE"   "CHRM2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-F1-6874 
"CHRM2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE"   "CHRM2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-F1-6874 
"CHRM2 WILD-TYPE" 
[1] "Remove cluster labels:" "CHRM2 MUTATED"         
clus
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6528      TCGA-D7-6815 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
D56V2, continuous
D56V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      1    6
  CHRM2 WILD-TYPE   52   73
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  FEMALE             1              52
  MALE               6              73
D56V4, multiclass
D56V5, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  T1             0               4
  T2             4              42
  T3             1              45
  T4             0              15
D56V6, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  N0             1              34
  N1             3              44
  N2             1              19
  N3             0              12
D56V7, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  M0             7             108
  M1             0              13
  MX             0               4
D56V8, multiclass
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  I               1              17
  II              3              29
  III             0              33
  IV              0              21
D56V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      1    6
  CHRM2 WILD-TYPE    7  118
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  NO              1               7
  YES             6             118

Clustering(57) Variable = IL13RA2 MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                0  1
  IL13RA2 MUTATED    2  2
  IL13RA2 WILD-TYPE 69 12
  IL13RA2 MUTATED IL13RA2 WILD-TYPE 
                4                81 
  IL13RA2 MUTATED IL13RA2 WILD-TYPE 
                2                12 
$`IL13RA2 MUTATED`
TCGA-CG-5726 TCGA-D7-5579 TCGA-D7-6526 TCGA-EQ-5647 
       28.96         4.54         6.61         0.62 

$`IL13RA2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        12.03        15.02        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 
       55.04        21.07         7.99         8.65         3.58         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-F1-6177 TCGA-F1-6874 
        4.27         6.54         2.01 

  IL13RA2 MUTATED IL13RA2 WILD-TYPE 
             0.62              0.07 
  IL13RA2 MUTATED IL13RA2 WILD-TYPE 
            28.96             70.06 
  IL13RA2 MUTATED IL13RA2 WILD-TYPE 
            5.575             4.010 
[1] "0.6 - 29.0 (5.6)" "0.1 - 70.1 (4.0)"
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"IL13RA2 WILD-TYPE"   "IL13RA2 MUTATED" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE"   "IL13RA2 MUTATED" "IL13RA2 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE"   "IL13RA2 MUTATED" "IL13RA2 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE"   "IL13RA2 MUTATED" "IL13RA2 WILD-TYPE" 
       TCGA-F1-6874 
"IL13RA2 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"IL13RA2 WILD-TYPE"   "IL13RA2 MUTATED" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE"   "IL13RA2 MUTATED" "IL13RA2 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE"   "IL13RA2 MUTATED" "IL13RA2 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE"   "IL13RA2 MUTATED" "IL13RA2 WILD-TYPE" 
       TCGA-F1-6874 
"IL13RA2 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"IL13RA2 WILD-TYPE"   "IL13RA2 MUTATED" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE"   "IL13RA2 MUTATED" "IL13RA2 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE"   "IL13RA2 MUTATED" "IL13RA2 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"IL13RA2 WILD-TYPE" "IL13RA2 WILD-TYPE"   "IL13RA2 MUTATED" "IL13RA2 WILD-TYPE" 
       TCGA-F1-6874 
"IL13RA2 WILD-TYPE" 
[1] "hr=" "2.8"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  IL13RA2 MUTATED      4    3
  IL13RA2 WILD-TYPE   49   76
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  FEMALE               4                49
  MALE                 3                76
D57V4, multiclass
D57V5, multiclass
    clus
vv   IL13RA2 MUTATED IL13RA2 WILD-TYPE
  T1               1                 3
  T2               1                45
  T3               3                43
  T4               1                14
D57V6, multiclass
    clus
vv   IL13RA2 MUTATED IL13RA2 WILD-TYPE
  N0               2                33
  N1               1                46
  N2               2                18
  N3               1                11
D57V7, multiclass
    clus
vv   IL13RA2 MUTATED IL13RA2 WILD-TYPE
  M0               6               109
  M1               1                12
  MX               0                 4
D57V8, multiclass
     clus
vv    IL13RA2 MUTATED IL13RA2 WILD-TYPE
  I                 2                16
  II                1                31
  III               2                31
  IV                1                20
D57V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  IL13RA2 MUTATED      2    5
  IL13RA2 WILD-TYPE    6  119
     clus
vv    IL13RA2 MUTATED IL13RA2 WILD-TYPE
  NO                2                 6
  YES               5               119

Clustering(58) Variable = NDN MUTATION ANALYSIS
D58V1, survival
               sevent
clus2            0  1
  NDN MUTATED    6  0
  NDN WILD-TYPE 65 14
  NDN MUTATED NDN WILD-TYPE 
            6            79 
  NDN MUTATED NDN WILD-TYPE 
            0            14 
$`NDN MUTATED`
TCGA-B7-5816 TCGA-BR-6852 TCGA-CG-4305 TCGA-CG-5721 TCGA-CG-5727 TCGA-CG-5728 
        5.62         0.26        15.95         5.98        31.04        65.10 

$`NDN WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        0.99         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        4.54         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  NDN MUTATED NDN WILD-TYPE 
         0.26          0.07 
  NDN MUTATED NDN WILD-TYPE 
        65.10         70.06 
  NDN MUTATED NDN WILD-TYPE 
       10.965         3.650 
[1] "0.3 - 65.1 (11.0)" "0.1 - 70.1 (3.6)" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
  "NDN MUTATED" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"NDN WILD-TYPE" "NDN WILD-TYPE"   "NDN MUTATED" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE"   "NDN MUTATED" "NDN WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"NDN WILD-TYPE" "NDN WILD-TYPE"   "NDN MUTATED" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE"   "NDN MUTATED"   "NDN MUTATED" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
  "NDN MUTATED" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"NDN WILD-TYPE" "NDN WILD-TYPE"   "NDN MUTATED" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE"   "NDN MUTATED" "NDN WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"NDN WILD-TYPE" "NDN WILD-TYPE"   "NDN MUTATED" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE"   "NDN MUTATED"   "NDN MUTATED" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
  "NDN MUTATED" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"NDN WILD-TYPE" "NDN WILD-TYPE"   "NDN MUTATED" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE"   "NDN MUTATED" "NDN WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"NDN WILD-TYPE" "NDN WILD-TYPE"   "NDN MUTATED" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE"   "NDN MUTATED"   "NDN MUTATED" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" "NDN WILD-TYPE" 
[1] "hr="     "8.4e+07"
D58V2, continuous
D58V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  NDN MUTATED      5    3
  NDN WILD-TYPE   48   76
        clus
vv       NDN MUTATED NDN WILD-TYPE
  FEMALE           5            48
  MALE             3            76
D58V4, multiclass
D58V5, multiclass
    clus
vv   NDN MUTATED NDN WILD-TYPE
  T1           0             4
  T2           2            44
  T3           3            43
  T4           2            13
D58V6, multiclass
    clus
vv   NDN MUTATED NDN WILD-TYPE
  N0           4            31
  N1           3            44
  N2           1            19
  N3           0            12
D58V7, multiclass
    clus
vv   NDN MUTATED NDN WILD-TYPE
  M0           8           107
  M1           0            13
  MX           0             4
D58V8, multiclass
     clus
vv    NDN MUTATED NDN WILD-TYPE
  I             1            17
  II            3            29
  III           2            31
  IV            1            20
D58V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  NDN MUTATED      0    8
  NDN WILD-TYPE    8  116
     clus
vv    NDN MUTATED NDN WILD-TYPE
  NO            0             8
  YES           8           116

Clustering(59) Variable = TCEB3C MUTATION ANALYSIS
D59V1, survival
                  sevent
clus2               0  1
  TCEB3C MUTATED    2  1
  TCEB3C WILD-TYPE 69 13
  TCEB3C MUTATED TCEB3C WILD-TYPE 
               3               82 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
               1               13 
$`TCEB3C MUTATED`
TCGA-CG-4436 TCGA-CG-5724 TCGA-D7-5577 
       52.96        12.03         8.65 

$`TCEB3C WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
       21.07         7.99         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  TCEB3C MUTATED TCEB3C WILD-TYPE 
            8.65             0.07 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
           52.96            70.06 
  TCEB3C MUTATED TCEB3C WILD-TYPE 
           12.03             3.83 
[1] "8.7 - 53.0 (12.0)" "0.1 - 70.1 (3.8)" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-F1-6874 
"TCEB3C WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-F1-6874 
"TCEB3C WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" "TCEB3C WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE"   "TCEB3C MUTATED" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "TCEB3C MUTATED" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" "TCEB3C WILD-TYPE" 
      TCGA-F1-6874 
"TCEB3C WILD-TYPE" 
[1] "hr=" "1.1"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCEB3C MUTATED      2    3
  TCEB3C WILD-TYPE   51   76
        clus
vv       TCEB3C MUTATED TCEB3C WILD-TYPE
  FEMALE              2               51
  MALE                3               76
D59V4, multiclass
D59V5, multiclass
    clus
vv   TCEB3C MUTATED TCEB3C WILD-TYPE
  T1              0                4
  T2              2               44
  T3              3               43
  T4              0               15
D59V6, multiclass
    clus
vv   TCEB3C MUTATED TCEB3C WILD-TYPE
  N0              1               34
  N1              1               46
  N2              1               19
  N3              2               10
D59V7, multiclass
    clus
vv   TCEB3C MUTATED TCEB3C WILD-TYPE
  M0              4              111
  M1              1               12
  MX              0                4
D59V8, multiclass
     clus
vv    TCEB3C MUTATED TCEB3C WILD-TYPE
  I                1               17
  II               0               32
  III              3               30
  IV               1               20
D59V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCEB3C MUTATED      1    4
  TCEB3C WILD-TYPE    7  120
     clus
vv    TCEB3C MUTATED TCEB3C WILD-TYPE
  NO               1                7
  YES              4              120

Clustering(60) Variable = ASTN2 MUTATION ANALYSIS
D60V1, survival
                 sevent
clus2              0  1
  ASTN2 MUTATED    7  2
  ASTN2 WILD-TYPE 64 12
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              9              76 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              2              12 
$`ASTN2 MUTATED`
TCGA-BR-6452 TCGA-BR-6852 TCGA-CD-5798 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5721 
        0.95         0.26         0.82         7.07        12.00         5.98 
TCGA-CG-5728 TCGA-CG-5734 TCGA-D7-5579 
       65.10         7.99         4.54 

$`ASTN2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5799 TCGA-CD-5800 
        0.66         1.12         0.76         0.66         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4474 TCGA-CG-4477 
       21.99         1.02         8.98        18.94         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 
       70.06        12.03        15.02        28.96        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 
       55.04        21.07         8.65         3.58         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  ASTN2 MUTATED ASTN2 WILD-TYPE 
           0.26            0.07 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
          65.10           70.06 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
           5.98            3.83 
[1] "0.3 - 65.1 (6.0)" "0.1 - 70.1 (3.8)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-F1-6874 
"ASTN2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-F1-6874 
"ASTN2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-F1-6874 
"ASTN2 WILD-TYPE" 
[1] "hr=" "1.6"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      9    7
  ASTN2 WILD-TYPE   44   72
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  FEMALE             9              44
  MALE               7              72
D60V4, multiclass
D60V5, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  T1             1               3
  T2             2              44
  T3             8              38
  T4             2              13
D60V6, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  N0             4              31
  N1             6              41
  N2             2              18
  N3             1              11
D60V7, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  M0            15             100
  M1             0              13
  MX             1               3
D60V8, multiclass
     clus
vv    ASTN2 MUTATED ASTN2 WILD-TYPE
  I               1              17
  II              4              28
  III             3              30
  IV              3              18
D60V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      1   15
  ASTN2 WILD-TYPE    7  109
     clus
vv    ASTN2 MUTATED ASTN2 WILD-TYPE
  NO              1               7
  YES            15             109

Clustering(61) Variable = FCRL3 MUTATION ANALYSIS
D61V1, survival
                 sevent
clus2              0  1
  FCRL3 MUTATED    6  1
  FCRL3 WILD-TYPE 65 13
  FCRL3 MUTATED FCRL3 WILD-TYPE 
              7              78 
  FCRL3 MUTATED FCRL3 WILD-TYPE 
              1              13 
$`FCRL3 MUTATED`
TCGA-B7-5816 TCGA-BR-6706 TCGA-BR-6852 TCGA-CG-4301 TCGA-CG-4466 TCGA-CG-5723 
        5.62         2.17         0.26         3.02        18.94        70.06 
TCGA-CG-5726 
       28.96 

$`FCRL3 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         0.62         1.71         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        1.12         0.76         0.66         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4304 
        0.49         0.30         0.07         0.39        20.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
        0.95        12.03        15.02        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 

  FCRL3 MUTATED FCRL3 WILD-TYPE 
           0.26            0.07 
  FCRL3 MUTATED FCRL3 WILD-TYPE 
          70.06           65.10 
  FCRL3 MUTATED FCRL3 WILD-TYPE 
           5.62            4.01 
[1] "0.3 - 70.1 (5.6)" "0.1 - 65.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "FCRL3 MUTATED" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-F1-6874 
"FCRL3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "FCRL3 MUTATED" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-F1-6874 
"FCRL3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "FCRL3 MUTATED" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FCRL3 WILD-TYPE"   "FCRL3 MUTATED" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" "FCRL3 WILD-TYPE" 
     TCGA-F1-6874 
"FCRL3 WILD-TYPE" 
[1] "hr=" "1.9"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FCRL3 MUTATED      5    4
  FCRL3 WILD-TYPE   48   75
        clus
vv       FCRL3 MUTATED FCRL3 WILD-TYPE
  FEMALE             5              48
  MALE               4              75
D61V4, multiclass
D61V5, multiclass
    clus
vv   FCRL3 MUTATED FCRL3 WILD-TYPE
  T1             1               3
  T2             3              43
  T3             3              43
  T4             2              13
D61V6, multiclass
    clus
vv   FCRL3 MUTATED FCRL3 WILD-TYPE
  N0             4              31
  N1             4              43
  N2             0              20
  N3             0              12
D61V7, multiclass
    clus
vv   FCRL3 MUTATED FCRL3 WILD-TYPE
  M0             8             107
  M1             1              12
  MX             0               4
D61V8, multiclass
     clus
vv    FCRL3 MUTATED FCRL3 WILD-TYPE
  I               2              16
  II              2              30
  III             3              30
  IV              1              20
D61V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FCRL3 MUTATED      0    9
  FCRL3 WILD-TYPE    8  115
     clus
vv    FCRL3 MUTATED FCRL3 WILD-TYPE
  NO              0               8
  YES             9             115

Clustering(62) Variable = PARK2 MUTATION ANALYSIS
D62V1, survival
                 sevent
clus2              0  1
  PARK2 MUTATED    5  1
  PARK2 WILD-TYPE 66 13
  PARK2 MUTATED PARK2 WILD-TYPE 
              6              79 
  PARK2 MUTATED PARK2 WILD-TYPE 
              1              13 
$`PARK2 MUTATED`
TCGA-BR-6452 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-D7-6527 TCGA-F1-6177 
        0.95        15.95         1.02         8.05         4.14         6.54 

$`PARK2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 
       20.02         3.02        27.02        52.96        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 
        8.19         6.90         0.69         5.95         6.61         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6874 
        2.01 

  PARK2 MUTATED PARK2 WILD-TYPE 
           0.95            0.07 
  PARK2 MUTATED PARK2 WILD-TYPE 
          15.95           70.06 
  PARK2 MUTATED PARK2 WILD-TYPE 
           5.34            4.01 
[1] "0.9 - 15.9 (5.3)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "PARK2 MUTATED"   "PARK2 MUTATED" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-F1-6874 
"PARK2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "PARK2 MUTATED"   "PARK2 MUTATED" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-F1-6874 
"PARK2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "PARK2 MUTATED"   "PARK2 MUTATED" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-F1-6874 
"PARK2 WILD-TYPE" 
[1] "hr=" "1.4"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARK2 MUTATED      3    6
  PARK2 WILD-TYPE   50   73
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  FEMALE             3              50
  MALE               6              73
D62V4, multiclass
D62V5, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  T1             1               3
  T2             4              42
  T3             2              44
  T4             0              15
D62V6, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  N0             1              34
  N1             5              42
  N2             1              19
  N3             0              12
D62V7, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  M0             7             108
  M1             1              12
  MX             1               3
D62V8, multiclass
     clus
vv    PARK2 MUTATED PARK2 WILD-TYPE
  I               1              17
  II              4              28
  III             0              33
  IV              1              20
D62V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARK2 MUTATED      1    8
  PARK2 WILD-TYPE    7  116
     clus
vv    PARK2 MUTATED PARK2 WILD-TYPE
  NO              1               7
  YES             8             116

Clustering(63) Variable = POU3F2 MUTATION ANALYSIS
D63V1, survival
                  sevent
clus2               0  1
  POU3F2 MUTATED    2  0
  POU3F2 WILD-TYPE 69 14
  POU3F2 MUTATED POU3F2 WILD-TYPE 
               2               83 
  POU3F2 MUTATED POU3F2 WILD-TYPE 
               0               14 
$`POU3F2 MUTATED`
TCGA-CG-4305 TCGA-CG-4472 
       15.95        12.00 

$`POU3F2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 
        0.39        20.02         3.02        27.02         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  POU3F2 MUTATED POU3F2 WILD-TYPE 
           12.00             0.07 
  POU3F2 MUTATED POU3F2 WILD-TYPE 
           15.95            70.06 
  POU3F2 MUTATED POU3F2 WILD-TYPE 
          13.975            4.010 
[1] "12.0 - 15.9 (14.0)" "0.1 - 70.1 (4.0)"  
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "POU3F2 MUTATED" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "POU3F2 MUTATED" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-F1-6874 
"POU3F2 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "POU3F2 MUTATED" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "POU3F2 MUTATED" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-F1-6874 
"POU3F2 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "POU3F2 MUTATED" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "POU3F2 MUTATED" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-F1-6874 
"POU3F2 WILD-TYPE" 
[1] "Remove cluster labels:" "POU3F2 MUTATED"        
clus
  POU3F2 MUTATED POU3F2 WILD-TYPE 
               2               83 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460       TCGA-CG-4462 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4474 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" "POU3F2 WILD-TYPE" 
D63V2, continuous
D63V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POU3F2 MUTATED      0    4
  POU3F2 WILD-TYPE   53   75
        clus
vv       POU3F2 MUTATED POU3F2 WILD-TYPE
  FEMALE              0               53
  MALE                4               75
D63V4, multiclass
D63V5, multiclass
    clus
vv   POU3F2 MUTATED POU3F2 WILD-TYPE
  T1              0                4
  T2              1               45
  T3              1               45
  T4              1               14
D63V6, multiclass
    clus
vv   POU3F2 MUTATED POU3F2 WILD-TYPE
  N0              0               35
  N1              3               44
  N2              0               20
  N3              0               12
D63V7, multiclass
    clus
vv   POU3F2 MUTATED POU3F2 WILD-TYPE
  M0              3              112
  M1              0               13
  MX              1                3
D63V8, multiclass
     clus
vv    POU3F2 MUTATED POU3F2 WILD-TYPE
  I                0               18
  II               1               31
  III              1               32
  IV               1               20
D63V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POU3F2 MUTATED      0    4
  POU3F2 WILD-TYPE    8  120
     clus
vv    POU3F2 MUTATED POU3F2 WILD-TYPE
  NO               0                8
  YES              4              120

Clustering(64) Variable = FAM9A MUTATION ANALYSIS
D64V1, survival
                 sevent
clus2              0  1
  FAM9A MUTATED    2  1
  FAM9A WILD-TYPE 69 13
  FAM9A MUTATED FAM9A WILD-TYPE 
              3              82 
  FAM9A MUTATED FAM9A WILD-TYPE 
              1              13 
$`FAM9A MUTATED`
TCGA-CG-4460 TCGA-CG-5721 TCGA-F1-6177 
       21.99         5.98         6.54 

$`FAM9A WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       47.05        19.07        12.03         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         0.99         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        2.93         4.27         0.62         2.01 

  FAM9A MUTATED FAM9A WILD-TYPE 
           5.98            0.07 
  FAM9A MUTATED FAM9A WILD-TYPE 
          21.99           70.06 
  FAM9A MUTATED FAM9A WILD-TYPE 
           6.54            3.83 
[1] "6.0 - 22.0 (6.5)" "0.1 - 70.1 (3.8)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE"   "FAM9A MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "FAM9A MUTATED" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE"   "FAM9A MUTATED" 
     TCGA-F1-6874 
"FAM9A WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE"   "FAM9A MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "FAM9A MUTATED" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE"   "FAM9A MUTATED" 
     TCGA-F1-6874 
"FAM9A WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE"   "FAM9A MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "FAM9A MUTATED" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE"   "FAM9A MUTATED" 
     TCGA-F1-6874 
"FAM9A WILD-TYPE" 
[1] "hr=" "1.5"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM9A MUTATED      3    3
  FAM9A WILD-TYPE   50   76
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  FEMALE             3              50
  MALE               3              76
D64V4, multiclass
D64V5, multiclass
    clus
vv   FAM9A MUTATED FAM9A WILD-TYPE
  T1             1               3
  T2             0              46
  T3             2              44
  T4             3              12
D64V6, multiclass
    clus
vv   FAM9A MUTATED FAM9A WILD-TYPE
  N0             0              35
  N1             4              43
  N2             2              18
  N3             0              12
D64V7, multiclass
    clus
vv   FAM9A MUTATED FAM9A WILD-TYPE
  M0             3             112
  M1             1              12
  MX             2               2
D64V8, multiclass
     clus
vv    FAM9A MUTATED FAM9A WILD-TYPE
  I               1              17
  II              0              32
  III             2              31
  IV              3              18
D64V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM9A MUTATED      0    6
  FAM9A WILD-TYPE    8  118
     clus
vv    FAM9A MUTATED FAM9A WILD-TYPE
  NO              0               8
  YES             6             118

Clustering(65) Variable = CSNK2A1 MUTATION ANALYSIS
D65V1, survival
                   sevent
clus2                0  1
  CSNK2A1 MUTATED    4  0
  CSNK2A1 WILD-TYPE 67 14
  CSNK2A1 MUTATED CSNK2A1 WILD-TYPE 
                4                81 
  CSNK2A1 MUTATED CSNK2A1 WILD-TYPE 
                0                14 
$`CSNK2A1 MUTATED`
TCGA-BR-6452 TCGA-CG-4305 TCGA-CG-5721 TCGA-D7-5579 
        0.95        15.95         5.98         4.54 

$`CSNK2A1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
       20.02         3.02        27.02         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        7.99         8.65         3.58         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  CSNK2A1 MUTATED CSNK2A1 WILD-TYPE 
             0.95              0.07 
  CSNK2A1 MUTATED CSNK2A1 WILD-TYPE 
            15.95             70.06 
  CSNK2A1 MUTATED CSNK2A1 WILD-TYPE 
             5.26              4.01 
[1] "0.9 - 15.9 (5.3)" "0.1 - 70.1 (4.0)"
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE"   "CSNK2A1 MUTATED" "CSNK2A1 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
  "CSNK2A1 MUTATED" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "CSNK2A1 MUTATED" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE"   "CSNK2A1 MUTATED" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-F1-6874 
"CSNK2A1 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE"   "CSNK2A1 MUTATED" "CSNK2A1 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
  "CSNK2A1 MUTATED" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "CSNK2A1 MUTATED" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE"   "CSNK2A1 MUTATED" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-F1-6874 
"CSNK2A1 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE"   "CSNK2A1 MUTATED" "CSNK2A1 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
  "CSNK2A1 MUTATED" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "CSNK2A1 MUTATED" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE"   "CSNK2A1 MUTATED" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" "CSNK2A1 WILD-TYPE" 
       TCGA-F1-6874 
"CSNK2A1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CSNK2A1 MUTATED      1    3
  CSNK2A1 WILD-TYPE   52   76
        clus
vv       CSNK2A1 MUTATED CSNK2A1 WILD-TYPE
  FEMALE               1                52
  MALE                 3                76
D65V4, multiclass
D65V5, multiclass
    clus
vv   CSNK2A1 MUTATED CSNK2A1 WILD-TYPE
  T1               0                 4
  T2               1                45
  T3               2                44
  T4               1                14
D65V6, multiclass
    clus
vv   CSNK2A1 MUTATED CSNK2A1 WILD-TYPE
  N0               1                34
  N1               2                45
  N2               1                19
  N3               0                12
D65V7, multiclass
    clus
vv   CSNK2A1 MUTATED CSNK2A1 WILD-TYPE
  M0               4               111
  M1               0                13
  MX               0                 4
D65V8, multiclass
     clus
vv    CSNK2A1 MUTATED CSNK2A1 WILD-TYPE
  I                 0                18
  II                3                29
  III               0                33
  IV                1                20
D65V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CSNK2A1 MUTATED      1    3
  CSNK2A1 WILD-TYPE    7  121
     clus
vv    CSNK2A1 MUTATED CSNK2A1 WILD-TYPE
  NO                1                 7
  YES               3               121

Clustering(66) Variable = CAPN6 MUTATION ANALYSIS
D66V1, survival
                 sevent
clus2              0  1
  CAPN6 MUTATED    1  1
  CAPN6 WILD-TYPE 70 13
  CAPN6 MUTATED CAPN6 WILD-TYPE 
              2              83 
  CAPN6 MUTATED CAPN6 WILD-TYPE 
              1              13 
$`CAPN6 MUTATED`
TCGA-BR-6852 TCGA-CG-4460 
        0.26        21.99 

$`CAPN6 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 
        1.22         0.66         1.12         0.76         0.66         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       19.07        12.03         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  CAPN6 MUTATED CAPN6 WILD-TYPE 
           0.26            0.07 
  CAPN6 MUTATED CAPN6 WILD-TYPE 
          21.99           70.06 
  CAPN6 MUTATED CAPN6 WILD-TYPE 
         11.125           4.010 
[1] "0.3 - 22.0 (11.1)" "0.1 - 70.1 (4.0)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CAPN6 WILD-TYPE"   "CAPN6 MUTATED" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE"   "CAPN6 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-F1-6874 
"CAPN6 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CAPN6 WILD-TYPE"   "CAPN6 MUTATED" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE"   "CAPN6 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-F1-6874 
"CAPN6 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CAPN6 WILD-TYPE"   "CAPN6 MUTATED" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE"   "CAPN6 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-F1-6874 
"CAPN6 WILD-TYPE" 
[1] "Remove cluster labels:" "CAPN6 MUTATED"         
clus
  CAPN6 MUTATED CAPN6 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-BR-6803      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4462      TCGA-CG-4465 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472      TCGA-CG-4474 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" "CAPN6 WILD-TYPE" 
D66V2, continuous
D66V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CAPN6 MUTATED      3    4
  CAPN6 WILD-TYPE   50   75
        clus
vv       CAPN6 MUTATED CAPN6 WILD-TYPE
  FEMALE             3              50
  MALE               4              75
D66V4, multiclass
D66V5, multiclass
    clus
vv   CAPN6 MUTATED CAPN6 WILD-TYPE
  T1             0               4
  T2             0              46
  T3             2              44
  T4             2              13
D66V6, multiclass
    clus
vv   CAPN6 MUTATED CAPN6 WILD-TYPE
  N0             1              34
  N1             3              44
  N2             0              20
  N3             1              11
D66V7, multiclass
    clus
vv   CAPN6 MUTATED CAPN6 WILD-TYPE
  M0             5             110
  M1             1              12
  MX             1               3
D66V8, multiclass
     clus
vv    CAPN6 MUTATED CAPN6 WILD-TYPE
  I               0              18
  II              1              31
  III             1              32
  IV              1              20
D66V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CAPN6 MUTATED      0    7
  CAPN6 WILD-TYPE    8  117
     clus
vv    CAPN6 MUTATED CAPN6 WILD-TYPE
  NO              0               8
  YES             7             117

Clustering(67) Variable = CHRM3 MUTATION ANALYSIS
D67V1, survival
                 sevent
clus2              0  1
  CHRM3 MUTATED    3  0
  CHRM3 WILD-TYPE 68 14
  CHRM3 MUTATED CHRM3 WILD-TYPE 
              3              82 
  CHRM3 MUTATED CHRM3 WILD-TYPE 
              0              14 
$`CHRM3 MUTATED`
TCGA-BR-6452 TCGA-CG-4305 TCGA-F1-6177 
        0.95        15.95         6.54 

$`CHRM3 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
       20.02         3.02        27.02         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        2.93         4.27         0.62         2.01 

  CHRM3 MUTATED CHRM3 WILD-TYPE 
           0.95            0.07 
  CHRM3 MUTATED CHRM3 WILD-TYPE 
          15.95           70.06 
  CHRM3 MUTATED CHRM3 WILD-TYPE 
           6.54            4.01 
[1] "0.9 - 15.9 (6.5)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE"   "CHRM3 MUTATED" "CHRM3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CHRM3 MUTATED" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE"   "CHRM3 MUTATED" 
     TCGA-F1-6874 
"CHRM3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE"   "CHRM3 MUTATED" "CHRM3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CHRM3 MUTATED" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE"   "CHRM3 MUTATED" 
     TCGA-F1-6874 
"CHRM3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE"   "CHRM3 MUTATED" "CHRM3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CHRM3 MUTATED" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE"   "CHRM3 MUTATED" 
     TCGA-F1-6874 
"CHRM3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM3 MUTATED      3    3
  CHRM3 WILD-TYPE   50   76
        clus
vv       CHRM3 MUTATED CHRM3 WILD-TYPE
  FEMALE             3              50
  MALE               3              76
D67V4, multiclass
D67V5, multiclass
    clus
vv   CHRM3 MUTATED CHRM3 WILD-TYPE
  T1             1               3
  T2             2              44
  T3             2              44
  T4             0              15
D67V6, multiclass
    clus
vv   CHRM3 MUTATED CHRM3 WILD-TYPE
  N0             1              34
  N1             4              43
  N2             0              20
  N3             0              12
D67V7, multiclass
    clus
vv   CHRM3 MUTATED CHRM3 WILD-TYPE
  M0             5             110
  M1             0              13
  MX             1               3
D67V8, multiclass
     clus
vv    CHRM3 MUTATED CHRM3 WILD-TYPE
  I               1              17
  II              2              30
  III             1              32
  IV              0              21
D67V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM3 MUTATED      0    6
  CHRM3 WILD-TYPE    8  118
     clus
vv    CHRM3 MUTATED CHRM3 WILD-TYPE
  NO              0               8
  YES             6             118

Clustering(68) Variable = ELF3 MUTATION ANALYSIS
D68V1, survival
                sevent
clus2             0  1
  ELF3 MUTATED    3  1
  ELF3 WILD-TYPE 68 13
  ELF3 MUTATED ELF3 WILD-TYPE 
             4             81 
  ELF3 MUTATED ELF3 WILD-TYPE 
             1             13 
$`ELF3 MUTATED`
TCGA-BR-6852 TCGA-CG-5721 TCGA-CG-5733 TCGA-F1-6874 
        0.26         5.98        21.07         2.01 

$`ELF3 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 
        1.22         0.66         1.12         0.76         0.66         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         0.99         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.27         0.62         6.54 

  ELF3 MUTATED ELF3 WILD-TYPE 
          0.26           0.07 
  ELF3 MUTATED ELF3 WILD-TYPE 
         21.07          70.06 
  ELF3 MUTATED ELF3 WILD-TYPE 
         3.995          4.010 
[1] "0.3 - 21.1 (4.0)" "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F1-6874 
  "ELF3 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F1-6874 
  "ELF3 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F1-6874 
  "ELF3 MUTATED" 
[1] "hr=" "1.9"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      4    2
  ELF3 WILD-TYPE   49   77
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  FEMALE            4             49
  MALE              2             77
D68V4, multiclass
D68V5, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  T1            0              4
  T2            2             44
  T3            2             44
  T4            2             13
D68V6, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  N0            3             32
  N1            1             46
  N2            2             18
  N3            0             12
D68V7, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  M0            6            109
  M1            0             13
  MX            0              4
D68V8, multiclass
     clus
vv    ELF3 MUTATED ELF3 WILD-TYPE
  I              1             17
  II             1             31
  III            3             30
  IV             1             20
D68V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      0    6
  ELF3 WILD-TYPE    8  118
     clus
vv    ELF3 MUTATED ELF3 WILD-TYPE
  NO             0              8
  YES            6            118

Clustering(69) Variable = ELL2 MUTATION ANALYSIS
D69V1, survival
                sevent
clus2             0  1
  ELL2 MUTATED    4  0
  ELL2 WILD-TYPE 67 14
  ELL2 MUTATED ELL2 WILD-TYPE 
             4             81 
  ELL2 MUTATED ELL2 WILD-TYPE 
             0             14 
$`ELL2 MUTATED`
TCGA-BR-6452 TCGA-CG-4437 TCGA-CG-5721 TCGA-F1-6177 
        0.95         8.05         5.98         6.54 

$`ELL2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        4.27         0.62         2.01 

  ELL2 MUTATED ELL2 WILD-TYPE 
          0.95           0.07 
  ELL2 MUTATED ELL2 WILD-TYPE 
          8.05          70.06 
  ELL2 MUTATED ELL2 WILD-TYPE 
          6.26           4.01 
[1] "0.9 - 8.1 (6.3)"  "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE"   "ELL2 MUTATED" "ELL2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE"   "ELL2 MUTATED" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "ELL2 MUTATED" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE"   "ELL2 MUTATED" 
    TCGA-F1-6874 
"ELL2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE"   "ELL2 MUTATED" "ELL2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE"   "ELL2 MUTATED" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "ELL2 MUTATED" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE"   "ELL2 MUTATED" 
    TCGA-F1-6874 
"ELL2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE"   "ELL2 MUTATED" "ELL2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE"   "ELL2 MUTATED" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "ELL2 MUTATED" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"ELL2 WILD-TYPE" "ELL2 WILD-TYPE" "ELL2 WILD-TYPE"   "ELL2 MUTATED" 
    TCGA-F1-6874 
"ELL2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELL2 MUTATED      3    5
  ELL2 WILD-TYPE   50   74
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  FEMALE            3             50
  MALE              5             74
D69V4, multiclass
D69V5, multiclass
    clus
vv   ELL2 MUTATED ELL2 WILD-TYPE
  T1            1              3
  T2            2             44
  T3            2             44
  T4            2             13
D69V6, multiclass
    clus
vv   ELL2 MUTATED ELL2 WILD-TYPE
  N0            3             32
  N1            5             42
  N2            0             20
  N3            0             12
D69V7, multiclass
    clus
vv   ELL2 MUTATED ELL2 WILD-TYPE
  M0            7            108
  M1            0             13
  MX            1              3
D69V8, multiclass
     clus
vv    ELL2 MUTATED ELL2 WILD-TYPE
  I              2             16
  II             2             30
  III            2             31
  IV             1             20
D69V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELL2 MUTATED      0    8
  ELL2 WILD-TYPE    8  116
     clus
vv    ELL2 MUTATED ELL2 WILD-TYPE
  NO             0              8
  YES            8            116

Clustering(70) Variable = EPHA6 MUTATION ANALYSIS
D70V1, survival
                 sevent
clus2              0  1
  EPHA6 MUTATED    8  0
  EPHA6 WILD-TYPE 63 14
  EPHA6 MUTATED EPHA6 WILD-TYPE 
              8              77 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
              0              14 
$`EPHA6 MUTATED`
TCGA-BR-6452 TCGA-BR-6565 TCGA-BR-6802 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5723 
        0.95         0.62         0.76         1.02         5.98        70.06 
TCGA-D7-5578 TCGA-D7-6527 
        3.58         4.14 

$`EPHA6 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        1.12         0.66         0.26         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 
        1.02         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        0.95        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 
        4.01        55.04        21.07         7.99         8.65         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        5.95         6.61         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  EPHA6 MUTATED EPHA6 WILD-TYPE 
           0.62            0.07 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
          70.06           65.10 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
           2.30            4.04 
[1] "0.6 - 70.1 (2.3)" "0.1 - 65.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-F1-6874 
"EPHA6 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-F1-6874 
"EPHA6 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-F1-6874 
"EPHA6 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      5    9
  EPHA6 WILD-TYPE   48   70
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  FEMALE             5              48
  MALE               9              70
D70V4, multiclass
D70V5, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  T1             0               4
  T2             2              44
  T3             7              39
  T4             3              12
D70V6, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  N0             4              31
  N1             7              40
  N2             1              19
  N3             0              12
D70V7, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  M0            12             103
  M1             1              12
  MX             1               3
D70V8, multiclass
     clus
vv    EPHA6 MUTATED EPHA6 WILD-TYPE
  I               0              18
  II              5              27
  III             4              29
  IV              2              19
D70V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      1   13
  EPHA6 WILD-TYPE    7  111
     clus
vv    EPHA6 MUTATED EPHA6 WILD-TYPE
  NO              1               7
  YES            13             111

Clustering(71) Variable = FBXW7 MUTATION ANALYSIS
D71V1, survival
                 sevent
clus2              0  1
  FBXW7 MUTATED    3  1
  FBXW7 WILD-TYPE 68 13
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              4              81 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              1              13 
$`FBXW7 MUTATED`
TCGA-BR-6852 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5733 
        0.26         5.98        70.06        21.07 

$`FBXW7 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 
        1.22         0.66         1.12         0.76         0.66         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 
        1.02         1.02         0.99         0.95        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        55.04         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  FBXW7 MUTATED FBXW7 WILD-TYPE 
           0.26            0.07 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          70.06           65.10 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
         13.525           4.010 
[1] "0.3 - 70.1 (13.5)" "0.1 - 65.1 (4.0)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-F1-6874 
"FBXW7 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-F1-6874 
"FBXW7 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-F1-6874 
"FBXW7 WILD-TYPE" 
[1] "hr=" "1.2"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED      5    5
  FBXW7 WILD-TYPE   48   74
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  FEMALE             5              48
  MALE               5              74
D71V4, multiclass
D71V5, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  T1             0               4
  T2             4              42
  T3             3              43
  T4             1              14
D71V6, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  N0             1              34
  N1             6              41
  N2             1              19
  N3             0              12
D71V7, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  M0             9             106
  M1             0              13
  MX             1               3
D71V8, multiclass
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  I               0              18
  II              2              30
  III             3              30
  IV              1              20
D71V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED      0   10
  FBXW7 WILD-TYPE    8  114
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  NO              0               8
  YES            10             114

Clustering(72) Variable = TP53TG5 MUTATION ANALYSIS
D72V1, survival
                   sevent
clus2                0  1
  TP53TG5 MUTATED    2  2
  TP53TG5 WILD-TYPE 69 12
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
                4                81 
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
                2                12 
$`TP53TG5 MUTATED`
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4472 TCGA-CG-5733 
       14.01        29.98        12.00        21.07 

$`TP53TG5 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 
       52.96         8.05        54.05         4.01        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        55.04         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
            12.00              0.07 
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
            29.98             70.06 
  TP53TG5 MUTATED TP53TG5 WILD-TYPE 
            17.54              3.65 
[1] "12.0 - 30.0 (17.5)" "0.1 - 70.1 (3.6)"  
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE"   "TP53TG5 MUTATED"   "TP53TG5 MUTATED" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
  "TP53TG5 MUTATED" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE"   "TP53TG5 MUTATED" "TP53TG5 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-F1-6874 
"TP53TG5 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE"   "TP53TG5 MUTATED"   "TP53TG5 MUTATED" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
  "TP53TG5 MUTATED" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE"   "TP53TG5 MUTATED" "TP53TG5 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-F1-6874 
"TP53TG5 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE"   "TP53TG5 MUTATED"   "TP53TG5 MUTATED" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
  "TP53TG5 MUTATED" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE"   "TP53TG5 MUTATED" "TP53TG5 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" "TP53TG5 WILD-TYPE" 
       TCGA-F1-6874 
"TP53TG5 WILD-TYPE" 
[1] "hr=" "1.3"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TP53TG5 MUTATED      1    3
  TP53TG5 WILD-TYPE   52   76
        clus
vv       TP53TG5 MUTATED TP53TG5 WILD-TYPE
  FEMALE               1                52
  MALE                 3                76
D72V4, multiclass
D72V5, multiclass
    clus
vv   TP53TG5 MUTATED TP53TG5 WILD-TYPE
  T1               1                 3
  T2               2                44
  T3               0                46
  T4               1                14
D72V6, multiclass
    clus
vv   TP53TG5 MUTATED TP53TG5 WILD-TYPE
  N0               1                34
  N1               1                46
  N2               2                18
  N3               0                12
D72V7, multiclass
    clus
vv   TP53TG5 MUTATED TP53TG5 WILD-TYPE
  M0               4               111
  M1               0                13
  MX               0                 4
D72V8, multiclass
     clus
vv    TP53TG5 MUTATED TP53TG5 WILD-TYPE
  I                 1                17
  II                0                32
  III               2                31
  IV                1                20
D72V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TP53TG5 MUTATED      0    4
  TP53TG5 WILD-TYPE    8  120
     clus
vv    TP53TG5 MUTATED TP53TG5 WILD-TYPE
  NO                0                 8
  YES               4               120

Clustering(73) Variable = ZNF559 MUTATION ANALYSIS
D73V1, survival
                  sevent
clus2               0  1
  ZNF559 MUTATED    2  1
  ZNF559 WILD-TYPE 69 13
  ZNF559 MUTATED ZNF559 WILD-TYPE 
               3               82 
  ZNF559 MUTATED ZNF559 WILD-TYPE 
               1               13 
$`ZNF559 MUTATED`
TCGA-BR-6706 TCGA-BR-6709 TCGA-CG-4465 
        2.17         1.22         8.98 

$`ZNF559 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6710 
        0.82         0.62         0.62         1.71         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
        1.12         0.76         0.66         0.26         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03        21.99         1.02        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  ZNF559 MUTATED ZNF559 WILD-TYPE 
            1.22             0.07 
  ZNF559 MUTATED ZNF559 WILD-TYPE 
            8.98            70.06 
  ZNF559 MUTATED ZNF559 WILD-TYPE 
           2.170            4.025 
[1] "1.2 - 9.0 (2.2)"  "0.1 - 70.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE"   "ZNF559 MUTATED" "ZNF559 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
  "ZNF559 MUTATED" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ZNF559 WILD-TYPE"   "ZNF559 MUTATED" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-F1-6874 
"ZNF559 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE"   "ZNF559 MUTATED" "ZNF559 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
  "ZNF559 MUTATED" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ZNF559 WILD-TYPE"   "ZNF559 MUTATED" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-F1-6874 
"ZNF559 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE"   "ZNF559 MUTATED" "ZNF559 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
  "ZNF559 MUTATED" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ZNF559 WILD-TYPE"   "ZNF559 MUTATED" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" "ZNF559 WILD-TYPE" 
      TCGA-F1-6874 
"ZNF559 WILD-TYPE" 
[1] "hr=" "3.8"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF559 MUTATED      5    2
  ZNF559 WILD-TYPE   48   77
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  FEMALE              5               48
  MALE                2               77
D73V4, multiclass
D73V5, multiclass
    clus
vv   ZNF559 MUTATED ZNF559 WILD-TYPE
  T1              0                4
  T2              0               46
  T3              3               43
  T4              3               12
D73V6, multiclass
    clus
vv   ZNF559 MUTATED ZNF559 WILD-TYPE
  N0              1               34
  N1              3               44
  N2              2               18
  N3              1               11
D73V7, multiclass
    clus
vv   ZNF559 MUTATED ZNF559 WILD-TYPE
  M0              6              109
  M1              1               12
  MX              0                4
D73V8, multiclass
     clus
vv    ZNF559 MUTATED ZNF559 WILD-TYPE
  I                0               18
  II               0               32
  III              4               29
  IV               2               19
D73V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF559 MUTATED      0    7
  ZNF559 WILD-TYPE    8  117
     clus
vv    ZNF559 MUTATED ZNF559 WILD-TYPE
  NO               0                8
  YES              7              117

Clustering(74) Variable = KRTAP4-1 MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                 0  1
  KRTAP4-1 MUTATED    3  0
  KRTAP4-1 WILD-TYPE 68 14
  KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE 
                 3                 82 
  KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE 
                 0                 14 
$`KRTAP4-1 MUTATED`
TCGA-BR-6803 TCGA-CG-4300 TCGA-CG-5728 
        0.66        20.02        65.10 

$`KRTAP4-1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-CD-5798 
        1.22         0.66         1.12         0.76         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       15.02        28.96        31.04         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE 
              0.66               0.07 
  KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE 
             65.10              70.06 
  KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE 
             20.02               4.01 
[1] "0.7 - 65.1 (20.0)" "0.1 - 70.1 (4.0)" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"KRTAP4-1 WILD-TYPE"   "KRTAP4-1 MUTATED" "KRTAP4-1 WILD-TYPE" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"KRTAP4-1 WILD-TYPE"   "KRTAP4-1 MUTATED" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE"   "KRTAP4-1 MUTATED" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-F1-6874 
"KRTAP4-1 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"KRTAP4-1 WILD-TYPE"   "KRTAP4-1 MUTATED" "KRTAP4-1 WILD-TYPE" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"KRTAP4-1 WILD-TYPE"   "KRTAP4-1 MUTATED" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE"   "KRTAP4-1 MUTATED" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-F1-6874 
"KRTAP4-1 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"KRTAP4-1 WILD-TYPE"   "KRTAP4-1 MUTATED" "KRTAP4-1 WILD-TYPE" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"KRTAP4-1 WILD-TYPE"   "KRTAP4-1 MUTATED" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE"   "KRTAP4-1 MUTATED" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" "KRTAP4-1 WILD-TYPE" 
        TCGA-F1-6874 
"KRTAP4-1 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP4-1 MUTATED      2    1
  KRTAP4-1 WILD-TYPE   51   78
        clus
vv       KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE
  FEMALE                2                 51
  MALE                  1                 78
D74V4, multiclass
D74V5, multiclass
    clus
vv   KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE
  T1                0                  4
  T2                1                 45
  T3                2                 44
  T4                0                 15
D74V6, multiclass
    clus
vv   KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE
  N0                2                 33
  N1                0                 47
  N2                1                 19
  N3                0                 12
D74V7, multiclass
    clus
vv   KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE
  M0                3                112
  M1                0                 13
  MX                0                  4
D74V8, multiclass
     clus
vv    KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE
  I                  1                 17
  II                 1                 31
  III                1                 32
  IV                 0                 21
D74V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP4-1 MUTATED      0    3
  KRTAP4-1 WILD-TYPE    8  121
     clus
vv    KRTAP4-1 MUTATED KRTAP4-1 WILD-TYPE
  NO                 0                  8
  YES                3                121

Clustering(75) Variable = OSGIN2 MUTATION ANALYSIS
D75V1, survival
                  sevent
clus2               0  1
  OSGIN2 MUTATED    1  2
  OSGIN2 WILD-TYPE 70 12
  OSGIN2 MUTATED OSGIN2 WILD-TYPE 
               3               82 
  OSGIN2 MUTATED OSGIN2 WILD-TYPE 
               2               12 
$`OSGIN2 MUTATED`
TCGA-B7-5816 TCGA-CG-4460 TCGA-CG-5733 
        5.62        21.99        21.07 

$`OSGIN2 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       19.07        12.03         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  OSGIN2 MUTATED OSGIN2 WILD-TYPE 
            5.62             0.07 
  OSGIN2 MUTATED OSGIN2 WILD-TYPE 
           21.99            70.06 
  OSGIN2 MUTATED OSGIN2 WILD-TYPE 
           21.07             3.83 
[1] "5.6 - 22.0 (21.1)" "0.1 - 70.1 (3.8)" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "OSGIN2 MUTATED" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE"   "OSGIN2 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE"   "OSGIN2 MUTATED" "OSGIN2 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-F1-6874 
"OSGIN2 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "OSGIN2 MUTATED" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE"   "OSGIN2 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE"   "OSGIN2 MUTATED" "OSGIN2 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-F1-6874 
"OSGIN2 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "OSGIN2 MUTATED" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE"   "OSGIN2 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE"   "OSGIN2 MUTATED" "OSGIN2 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" "OSGIN2 WILD-TYPE" 
      TCGA-F1-6874 
"OSGIN2 WILD-TYPE" 
[1] "hr=" "2.1"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OSGIN2 MUTATED      4    2
  OSGIN2 WILD-TYPE   49   77
        clus
vv       OSGIN2 MUTATED OSGIN2 WILD-TYPE
  FEMALE              4               49
  MALE                2               77
D75V4, multiclass
D75V5, multiclass
    clus
vv   OSGIN2 MUTATED OSGIN2 WILD-TYPE
  T1              0                4
  T2              1               45
  T3              2               44
  T4              2               13
D75V6, multiclass
    clus
vv   OSGIN2 MUTATED OSGIN2 WILD-TYPE
  N0              1               34
  N1              4               43
  N2              1               19
  N3              0               12
D75V7, multiclass
    clus
vv   OSGIN2 MUTATED OSGIN2 WILD-TYPE
  M0              4              111
  M1              1               12
  MX              1                3
D75V8, multiclass
     clus
vv    OSGIN2 MUTATED OSGIN2 WILD-TYPE
  I                0               18
  II               1               31
  III              3               30
  IV               1               20
D75V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OSGIN2 MUTATED      0    6
  OSGIN2 WILD-TYPE    8  118
     clus
vv    OSGIN2 MUTATED OSGIN2 WILD-TYPE
  NO               0                8
  YES              6              118

Clustering(76) Variable = SMAD2 MUTATION ANALYSIS
D76V1, survival
                 sevent
clus2              0  1
  SMAD2 MUTATED    3  0
  SMAD2 WILD-TYPE 68 14
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              3              82 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              0              14 
$`SMAD2 MUTATED`
TCGA-BR-6452 TCGA-CG-4444 TCGA-CG-4462 
        0.95        47.05         1.02 

$`SMAD2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 
        8.05        54.05         4.01        14.01        29.98        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03        21.99         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  SMAD2 MUTATED SMAD2 WILD-TYPE 
           0.95            0.07 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
          47.05           70.06 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
          1.020           4.025 
[1] "0.9 - 47.0 (1.0)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-F1-6874 
"SMAD2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-F1-6874 
"SMAD2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-F1-6874 
"SMAD2 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      4    3
  SMAD2 WILD-TYPE   49   76
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  FEMALE             4              49
  MALE               3              76
D76V4, multiclass
D76V5, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  T1             0               4
  T2             2              44
  T3             4              42
  T4             0              15
D76V6, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  N0             1              34
  N1             2              45
  N2             2              18
  N3             1              11
D76V7, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  M0             6             109
  M1             1              12
  MX             0               4
D76V8, multiclass
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  I               0              18
  II              1              31
  III             3              30
  IV              1              20
D76V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      0    7
  SMAD2 WILD-TYPE    8  117
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  NO              0               8
  YES             7             117

Clustering(77) Variable = ANAPC1 MUTATION ANALYSIS
D77V1, survival
                  sevent
clus2               0  1
  ANAPC1 MUTATED    3  2
  ANAPC1 WILD-TYPE 68 12
  ANAPC1 MUTATED ANAPC1 WILD-TYPE 
               5               80 
  ANAPC1 MUTATED ANAPC1 WILD-TYPE 
               2               12 
$`ANAPC1 MUTATED`
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-5723 TCGA-CG-5733 TCGA-F1-6177 
       15.95         1.02        70.06        21.07         6.54 

$`ANAPC1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 
        0.39        20.02         3.02        27.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         5.98         0.95        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        55.04         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6874 
        0.62         2.01 

  ANAPC1 MUTATED ANAPC1 WILD-TYPE 
            1.02             0.07 
  ANAPC1 MUTATED ANAPC1 WILD-TYPE 
           70.06            65.10 
  ANAPC1 MUTATED ANAPC1 WILD-TYPE 
           15.95             3.83 
[1] "1.0 - 70.1 (15.9)" "0.1 - 65.1 (3.8)" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "ANAPC1 MUTATED"   "ANAPC1 MUTATED" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE"   "ANAPC1 MUTATED" "ANAPC1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE"   "ANAPC1 MUTATED" "ANAPC1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE"   "ANAPC1 MUTATED" 
      TCGA-F1-6874 
"ANAPC1 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "ANAPC1 MUTATED"   "ANAPC1 MUTATED" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE"   "ANAPC1 MUTATED" "ANAPC1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE"   "ANAPC1 MUTATED" "ANAPC1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE"   "ANAPC1 MUTATED" 
      TCGA-F1-6874 
"ANAPC1 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "ANAPC1 MUTATED"   "ANAPC1 MUTATED" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE"   "ANAPC1 MUTATED" "ANAPC1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE"   "ANAPC1 MUTATED" "ANAPC1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE" "ANAPC1 WILD-TYPE"   "ANAPC1 MUTATED" 
      TCGA-F1-6874 
"ANAPC1 WILD-TYPE" 
[1] "hr=" "1.3"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANAPC1 MUTATED      4    8
  ANAPC1 WILD-TYPE   49   71
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  FEMALE              4               49
  MALE                8               71
D77V4, multiclass
D77V5, multiclass
    clus
vv   ANAPC1 MUTATED ANAPC1 WILD-TYPE
  T1              1                3
  T2              4               42
  T3              2               44
  T4              3               12
D77V6, multiclass
    clus
vv   ANAPC1 MUTATED ANAPC1 WILD-TYPE
  N0              2               33
  N1              5               42
  N2              3               17
  N3              1               11
D77V7, multiclass
    clus
vv   ANAPC1 MUTATED ANAPC1 WILD-TYPE
  M0             10              105
  M1              1               12
  MX              1                3
D77V8, multiclass
     clus
vv    ANAPC1 MUTATED ANAPC1 WILD-TYPE
  I                2               16
  II               2               30
  III              4               29
  IV               2               19
D77V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANAPC1 MUTATED      0   12
  ANAPC1 WILD-TYPE    8  112
     clus
vv    ANAPC1 MUTATED ANAPC1 WILD-TYPE
  NO               0                8
  YES             12              112

Clustering(78) Variable = AUH MUTATION ANALYSIS
D78V1, survival
               sevent
clus2            0  1
  AUH MUTATED    2  0
  AUH WILD-TYPE 69 14
  AUH MUTATED AUH WILD-TYPE 
            2            83 
  AUH MUTATED AUH WILD-TYPE 
            0            14 
$`AUH MUTATED`
TCGA-BR-6452 TCGA-F1-6874 
        0.95         2.01 

$`AUH WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.04         2.93         4.27         0.62         6.54 

  AUH MUTATED AUH WILD-TYPE 
         0.95          0.07 
  AUH MUTATED AUH WILD-TYPE 
         2.01         70.06 
  AUH MUTATED AUH WILD-TYPE 
         1.48          4.04 
[1] "0.9 - 2.0 (1.5)"  "0.1 - 70.1 (4.0)"
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"AUH WILD-TYPE" "AUH WILD-TYPE"   "AUH MUTATED" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE"   "AUH MUTATED" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"AUH WILD-TYPE" "AUH WILD-TYPE"   "AUH MUTATED" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE"   "AUH MUTATED" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"AUH WILD-TYPE" "AUH WILD-TYPE"   "AUH MUTATED" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE"   "AUH MUTATED" 
[1] "Remove cluster labels:" "AUH MUTATED"           
clus
  AUH MUTATED AUH WILD-TYPE 
            2            83 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6455    TCGA-BR-6457    TCGA-BR-6458 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813    TCGA-CG-4300 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441    TCGA-CG-4443 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460    TCGA-CG-4462 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472    TCGA-CG-4474 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
   TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177 
"AUH WILD-TYPE" "AUH WILD-TYPE" "AUH WILD-TYPE" 
D78V2, continuous
D78V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  AUH MUTATED      3    2
  AUH WILD-TYPE   50   77
        clus
vv       AUH MUTATED AUH WILD-TYPE
  FEMALE           3            50
  MALE             2            77
D78V4, multiclass
D78V5, multiclass
    clus
vv   AUH MUTATED AUH WILD-TYPE
  T1           1             3
  T2           1            45
  T3           2            44
  T4           0            15
D78V6, multiclass
    clus
vv   AUH MUTATED AUH WILD-TYPE
  N0           2            33
  N1           2            45
  N2           0            20
  N3           0            12
D78V7, multiclass
    clus
vv   AUH MUTATED AUH WILD-TYPE
  M0           4           111
  M1           0            13
  MX           1             3
D78V8, multiclass
     clus
vv    AUH MUTATED AUH WILD-TYPE
  I             1            17
  II            1            31
  III           1            32
  IV            0            21
D78V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  AUH MUTATED      0    5
  AUH WILD-TYPE    8  119
     clus
vv    AUH MUTATED AUH WILD-TYPE
  NO            0             8
  YES           5           119

Clustering(79) Variable = EDIL3 MUTATION ANALYSIS
D79V1, survival
                 sevent
clus2              0  1
  EDIL3 MUTATED    2  1
  EDIL3 WILD-TYPE 69 13
  EDIL3 MUTATED EDIL3 WILD-TYPE 
              3              82 
  EDIL3 MUTATED EDIL3 WILD-TYPE 
              1              13 
$`EDIL3 MUTATED`
TCGA-CG-4465 TCGA-CG-5721 TCGA-CG-5728 
        8.98         5.98        65.10 

$`EDIL3 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 
       47.05        19.07        12.03        21.99         1.02        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         0.99         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       15.02        28.96        31.04         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  EDIL3 MUTATED EDIL3 WILD-TYPE 
           5.98            0.07 
  EDIL3 MUTATED EDIL3 WILD-TYPE 
          65.10           70.06 
  EDIL3 MUTATED EDIL3 WILD-TYPE 
           8.98            3.83 
[1] "6.0 - 65.1 (9.0)" "0.1 - 70.1 (3.8)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EDIL3 WILD-TYPE"   "EDIL3 MUTATED" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EDIL3 MUTATED" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE"   "EDIL3 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-F1-6874 
"EDIL3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EDIL3 WILD-TYPE"   "EDIL3 MUTATED" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EDIL3 MUTATED" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE"   "EDIL3 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-F1-6874 
"EDIL3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EDIL3 WILD-TYPE"   "EDIL3 MUTATED" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EDIL3 MUTATED" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE"   "EDIL3 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" "EDIL3 WILD-TYPE" 
     TCGA-F1-6874 
"EDIL3 WILD-TYPE" 
[1] "hr=" "1.1"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDIL3 MUTATED      4    2
  EDIL3 WILD-TYPE   49   77
        clus
vv       EDIL3 MUTATED EDIL3 WILD-TYPE
  FEMALE             4              49
  MALE               2              77
D79V4, multiclass
D79V5, multiclass
    clus
vv   EDIL3 MUTATED EDIL3 WILD-TYPE
  T1             0               4
  T2             2              44
  T3             1              45
  T4             2              13
D79V6, multiclass
    clus
vv   EDIL3 MUTATED EDIL3 WILD-TYPE
  N0             1              34
  N1             3              44
  N2             0              20
  N3             1              11
D79V7, multiclass
    clus
vv   EDIL3 MUTATED EDIL3 WILD-TYPE
  M0             5             110
  M1             1              12
  MX             0               4
D79V8, multiclass
     clus
vv    EDIL3 MUTATED EDIL3 WILD-TYPE
  I               1              17
  II              0              32
  III             1              32
  IV              2              19
D79V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDIL3 MUTATED      0    6
  EDIL3 WILD-TYPE    8  118
     clus
vv    EDIL3 MUTATED EDIL3 WILD-TYPE
  NO              0               8
  YES             6             118

Clustering(80) Variable = OR4C13 MUTATION ANALYSIS
D80V1, survival
                  sevent
clus2               0  1
  OR4C13 MUTATED    3  0
  OR4C13 WILD-TYPE 68 14
  OR4C13 MUTATED OR4C13 WILD-TYPE 
               3               82 
  OR4C13 MUTATED OR4C13 WILD-TYPE 
               0               14 
$`OR4C13 MUTATED`
TCGA-BR-6457 TCGA-D7-6524 TCGA-D7-6528 
        1.35         0.69         1.68 

$`OR4C13 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6525 
        9.80        15.65         9.63         8.19         6.90         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        6.61         4.14         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  OR4C13 MUTATED OR4C13 WILD-TYPE 
            0.69             0.07 
  OR4C13 MUTATED OR4C13 WILD-TYPE 
            1.68            70.06 
  OR4C13 MUTATED OR4C13 WILD-TYPE 
            1.35             4.09 
[1] "0.7 - 1.7 (1.4)"  "0.1 - 70.1 (4.1)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
  "OR4C13 MUTATED" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "OR4C13 MUTATED" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "OR4C13 MUTATED" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-F1-6874 
"OR4C13 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
  "OR4C13 MUTATED" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "OR4C13 MUTATED" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "OR4C13 MUTATED" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-F1-6874 
"OR4C13 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
  "OR4C13 MUTATED" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "OR4C13 MUTATED" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "OR4C13 MUTATED" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" "OR4C13 WILD-TYPE" 
      TCGA-F1-6874 
"OR4C13 WILD-TYPE" 
[1] "hr="     "9400000"
D80V2, continuous
D80V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C13 MUTATED      3    2
  OR4C13 WILD-TYPE   50   77
        clus
vv       OR4C13 MUTATED OR4C13 WILD-TYPE
  FEMALE              3               50
  MALE                2               77
D80V4, multiclass
D80V5, multiclass
    clus
vv   OR4C13 MUTATED OR4C13 WILD-TYPE
  T1              0                4
  T2              2               44
  T3              1               45
  T4              1               14
D80V6, multiclass
    clus
vv   OR4C13 MUTATED OR4C13 WILD-TYPE
  N0              2               33
  N1              2               45
  N2              1               19
  N3              0               12
D80V7, multiclass
    clus
vv   OR4C13 MUTATED OR4C13 WILD-TYPE
  M0              5              110
  M1              0               13
  MX              0                4
D80V8, multiclass
     clus
vv    OR4C13 MUTATED OR4C13 WILD-TYPE
  I                1               17
  II               2               30
  III              0               33
  IV               1               20
D80V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C13 MUTATED      0    5
  OR4C13 WILD-TYPE    8  119
     clus
vv    OR4C13 MUTATED OR4C13 WILD-TYPE
  NO               0                8
  YES              5              119

Clustering(81) Variable = OR4C16 MUTATION ANALYSIS
D81V1, survival
                  sevent
clus2               0  1
  OR4C16 MUTATED    6  1
  OR4C16 WILD-TYPE 65 13
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               7               78 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               1               13 
$`OR4C16 MUTATED`
TCGA-BR-6452 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5721 
        0.95        29.98        47.05         7.07         1.02         5.98 
TCGA-D7-5578 
        3.58 

$`OR4C16 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4449 TCGA-CG-4455 
        8.05        54.05         4.01        14.01        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02         8.98        18.94        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 
        4.01        55.04        21.07         7.99         8.65         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 

  OR4C16 MUTATED OR4C16 WILD-TYPE 
            0.95             0.07 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
           47.05            70.06 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
            5.98             4.01 
[1] "0.9 - 47.0 (6.0)" "0.1 - 70.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-F1-6874 
"OR4C16 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-F1-6874 
"OR4C16 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-F1-6874 
"OR4C16 WILD-TYPE" 
[1] "hr=" "1.7"
D81V2, continuous
D81V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      3    6
  OR4C16 WILD-TYPE   50   73
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  FEMALE              3               50
  MALE                6               73
D81V4, multiclass
D81V5, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  T1              1                3
  T2              2               44
  T3              4               42
  T4              1               14
D81V6, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  N0              3               32
  N1              2               45
  N2              3               17
  N3              1               11
D81V7, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  M0              9              106
  M1              0               13
  MX              0                4
D81V8, multiclass
     clus
vv    OR4C16 MUTATED OR4C16 WILD-TYPE
  I                2               16
  II               2               30
  III              2               31
  IV               2               19
D81V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      0    9
  OR4C16 WILD-TYPE    8  115
     clus
vv    OR4C16 MUTATED OR4C16 WILD-TYPE
  NO               0                8
  YES              9              115

Clustering(82) Variable = PRR11 MUTATION ANALYSIS
D82V1, survival
                 sevent
clus2              0  1
  PRR11 MUTATED    2  0
  PRR11 WILD-TYPE 69 14
  PRR11 MUTATED PRR11 WILD-TYPE 
              2              83 
  PRR11 MUTATED PRR11 WILD-TYPE 
              0              14 
$`PRR11 MUTATED`
TCGA-B7-5816 TCGA-F1-6177 
        5.62         6.54 

$`PRR11 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         2.01 

  PRR11 MUTATED PRR11 WILD-TYPE 
           5.62            0.07 
  PRR11 MUTATED PRR11 WILD-TYPE 
           6.54           70.06 
  PRR11 MUTATED PRR11 WILD-TYPE 
           6.08            4.01 
[1] "5.6 - 6.5 (6.1)"  "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "PRR11 MUTATED" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE"   "PRR11 MUTATED" 
     TCGA-F1-6874 
"PRR11 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "PRR11 MUTATED" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE"   "PRR11 MUTATED" 
     TCGA-F1-6874 
"PRR11 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "PRR11 MUTATED" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE"   "PRR11 MUTATED" 
     TCGA-F1-6874 
"PRR11 WILD-TYPE" 
[1] "Remove cluster labels:" "PRR11 MUTATED"         
clus
  PRR11 MUTATED PRR11 WILD-TYPE 
              2              83 
     TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455      TCGA-BR-6457 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
     TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6874 
"PRR11 WILD-TYPE" "PRR11 WILD-TYPE" "PRR11 WILD-TYPE" 
D82V2, continuous
D82V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRR11 MUTATED      2    2
  PRR11 WILD-TYPE   51   77
        clus
vv       PRR11 MUTATED PRR11 WILD-TYPE
  FEMALE             2              51
  MALE               2              77
D82V4, multiclass
D82V5, multiclass
    clus
vv   PRR11 MUTATED PRR11 WILD-TYPE
  T1             1               3
  T2             0              46
  T3             1              45
  T4             1              14
D82V6, multiclass
    clus
vv   PRR11 MUTATED PRR11 WILD-TYPE
  N0             1              34
  N1             3              44
  N2             0              20
  N3             0              12
D82V7, multiclass
    clus
vv   PRR11 MUTATED PRR11 WILD-TYPE
  M0             3             112
  M1             0              13
  MX             1               3
D82V8, multiclass
     clus
vv    PRR11 MUTATED PRR11 WILD-TYPE
  I               1              17
  II              0              32
  III             2              31
  IV              0              21
D82V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRR11 MUTATED      0    4
  PRR11 WILD-TYPE    8  120
     clus
vv    PRR11 MUTATED PRR11 WILD-TYPE
  NO              0               8
  YES             4             120

Clustering(83) Variable = AFAP1 MUTATION ANALYSIS
D83V1, survival
                 sevent
clus2              0  1
  AFAP1 MUTATED    4  1
  AFAP1 WILD-TYPE 67 13
  AFAP1 MUTATED AFAP1 WILD-TYPE 
              5              80 
  AFAP1 MUTATED AFAP1 WILD-TYPE 
              1              13 
$`AFAP1 MUTATED`
TCGA-BR-6452 TCGA-BR-6852 TCGA-CG-5721 TCGA-CG-5724 TCGA-F1-6177 
        0.95         0.26         5.98        12.03         6.54 

$`AFAP1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 
        1.02         0.99         0.95        70.06        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6874 
        0.62         2.01 

  AFAP1 MUTATED AFAP1 WILD-TYPE 
           0.26            0.07 
  AFAP1 MUTATED AFAP1 WILD-TYPE 
          12.03           70.06 
  AFAP1 MUTATED AFAP1 WILD-TYPE 
           5.98            4.01 
[1] "0.3 - 12.0 (6.0)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE"   "AFAP1 MUTATED" "AFAP1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"AFAP1 WILD-TYPE"   "AFAP1 MUTATED" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "AFAP1 MUTATED" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE"   "AFAP1 MUTATED" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE"   "AFAP1 MUTATED" 
     TCGA-F1-6874 
"AFAP1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE"   "AFAP1 MUTATED" "AFAP1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"AFAP1 WILD-TYPE"   "AFAP1 MUTATED" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "AFAP1 MUTATED" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE"   "AFAP1 MUTATED" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE"   "AFAP1 MUTATED" 
     TCGA-F1-6874 
"AFAP1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE"   "AFAP1 MUTATED" "AFAP1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"AFAP1 WILD-TYPE"   "AFAP1 MUTATED" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "AFAP1 MUTATED" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE"   "AFAP1 MUTATED" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE" "AFAP1 WILD-TYPE"   "AFAP1 MUTATED" 
     TCGA-F1-6874 
"AFAP1 WILD-TYPE" 
[1] "hr=" "2.7"
D83V2, continuous
D83V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AFAP1 MUTATED      2    3
  AFAP1 WILD-TYPE   51   76
        clus
vv       AFAP1 MUTATED AFAP1 WILD-TYPE
  FEMALE             2              51
  MALE               3              76
D83V4, multiclass
D83V5, multiclass
    clus
vv   AFAP1 MUTATED AFAP1 WILD-TYPE
  T1             1               3
  T2             0              46
  T3             3              43
  T4             1              14
D83V6, multiclass
    clus
vv   AFAP1 MUTATED AFAP1 WILD-TYPE
  N0             2              33
  N1             2              45
  N2             0              20
  N3             1              11
D83V7, multiclass
    clus
vv   AFAP1 MUTATED AFAP1 WILD-TYPE
  M0             3             112
  M1             1              12
  MX             1               3
D83V8, multiclass
     clus
vv    AFAP1 MUTATED AFAP1 WILD-TYPE
  I               1              17
  II              2              30
  III             0              33
  IV              2              19
D83V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AFAP1 MUTATED      0    5
  AFAP1 WILD-TYPE    8  119
     clus
vv    AFAP1 MUTATED AFAP1 WILD-TYPE
  NO              0               8
  YES             5             119

Clustering(84) Variable = LIN7A MUTATION ANALYSIS
D84V1, survival
                 sevent
clus2              0  1
  LIN7A MUTATED    3  0
  LIN7A WILD-TYPE 68 14
  LIN7A MUTATED LIN7A WILD-TYPE 
              3              82 
  LIN7A MUTATED LIN7A WILD-TYPE 
              0              14 
$`LIN7A MUTATED`
TCGA-CG-4466 TCGA-CG-5721 TCGA-D7-6525 
       18.94         5.98         5.95 

$`LIN7A WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         0.99         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 
       15.65         9.63         8.19         6.90         0.69         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  LIN7A MUTATED LIN7A WILD-TYPE 
           5.95            0.07 
  LIN7A MUTATED LIN7A WILD-TYPE 
          18.94           70.06 
  LIN7A MUTATED LIN7A WILD-TYPE 
           5.98            3.83 
[1] "6.0 - 18.9 (6.0)" "0.1 - 70.1 (3.8)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-F1-6874 
"LIN7A WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-F1-6874 
"LIN7A WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"LIN7A WILD-TYPE"   "LIN7A MUTATED" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" "LIN7A WILD-TYPE" 
     TCGA-F1-6874 
"LIN7A WILD-TYPE" 
[1] "hr="     "2.6e+07"
D84V2, continuous
D84V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LIN7A MUTATED      3    3
  LIN7A WILD-TYPE   50   76
        clus
vv       LIN7A MUTATED LIN7A WILD-TYPE
  FEMALE             3              50
  MALE               3              76
D84V4, multiclass
D84V5, multiclass
    clus
vv   LIN7A MUTATED LIN7A WILD-TYPE
  T1             1               3
  T2             2              44
  T3             2              44
  T4             1              14
D84V6, multiclass
    clus
vv   LIN7A MUTATED LIN7A WILD-TYPE
  N0             1              34
  N1             3              44
  N2             1              19
  N3             0              12
D84V7, multiclass
    clus
vv   LIN7A MUTATED LIN7A WILD-TYPE
  M0             6             109
  M1             0              13
  MX             0               4
D84V8, multiclass
     clus
vv    LIN7A MUTATED LIN7A WILD-TYPE
  I               1              17
  II              0              32
  III             3              30
  IV              1              20
D84V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LIN7A MUTATED      1    5
  LIN7A WILD-TYPE    7  119
     clus
vv    LIN7A MUTATED LIN7A WILD-TYPE
  NO              1               7
  YES             5             119

Clustering(85) Variable = OR8B4 MUTATION ANALYSIS
D85V1, survival
                 sevent
clus2              0  1
  OR8B4 MUTATED    2  1
  OR8B4 WILD-TYPE 69 13
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              3              82 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              1              13 
$`OR8B4 MUTATED`
TCGA-CG-5733 TCGA-D7-6525 TCGA-D7-6528 
       21.07         5.95         1.68 

$`OR8B4 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
        4.01        55.04         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        6.61         4.14         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  OR8B4 MUTATED OR8B4 WILD-TYPE 
           1.68            0.07 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
          21.07           70.06 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
           5.95            4.01 
[1] "1.7 - 21.1 (6.0)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-F1-6874 
"OR8B4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-F1-6874 
"OR8B4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-F1-6874 
"OR8B4 WILD-TYPE" 
[1] "hr=" "1.9"
D85V2, continuous
D85V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8B4 MUTATED      2    1
  OR8B4 WILD-TYPE   51   78
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  FEMALE             2              51
  MALE               1              78
D85V4, multiclass
D85V5, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  T1             0               4
  T2             3              43
  T3             0              46
  T4             0              15
D85V6, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  N0             1              34
  N1             0              47
  N2             2              18
  N3             0              12
D85V7, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  M0             3             112
  M1             0              13
  MX             0               4
D85V8, multiclass
     clus
vv    OR8B4 MUTATED OR8B4 WILD-TYPE
  I               1              17
  II              0              32
  III             2              31
  IV              0              21
D85V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8B4 MUTATED      1    2
  OR8B4 WILD-TYPE    7  122
     clus
vv    OR8B4 MUTATED OR8B4 WILD-TYPE
  NO              1               7
  YES             2             122

Clustering(86) Variable = PID1 MUTATION ANALYSIS
D86V1, survival
                sevent
clus2             0  1
  PID1 MUTATED    3  0
  PID1 WILD-TYPE 68 14
  PID1 MUTATED PID1 WILD-TYPE 
             3             82 
  PID1 MUTATED PID1 WILD-TYPE 
             0             14 
$`PID1 MUTATED`
TCGA-CG-5728 TCGA-D7-6817 TCGA-D7-6822 
       65.10         4.70         4.27 

$`PID1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 
       70.06        12.03        15.02        28.96        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 
        5.95         6.61         4.14         1.68         3.65         4.04 
TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         0.62         6.54         2.01 

  PID1 MUTATED PID1 WILD-TYPE 
          4.27           0.07 
  PID1 MUTATED PID1 WILD-TYPE 
         65.10          70.06 
  PID1 MUTATED PID1 WILD-TYPE 
          4.70           3.83 
[1] "4.3 - 65.1 (4.7)" "0.1 - 70.1 (3.8)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE"   "PID1 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PID1 WILD-TYPE" "PID1 WILD-TYPE"   "PID1 MUTATED" "PID1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PID1 WILD-TYPE"   "PID1 MUTATED" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-F1-6874 
"PID1 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE"   "PID1 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PID1 WILD-TYPE" "PID1 WILD-TYPE"   "PID1 MUTATED" "PID1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PID1 WILD-TYPE"   "PID1 MUTATED" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-F1-6874 
"PID1 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE"   "PID1 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PID1 WILD-TYPE" "PID1 WILD-TYPE"   "PID1 MUTATED" "PID1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PID1 WILD-TYPE"   "PID1 MUTATED" "PID1 WILD-TYPE" "PID1 WILD-TYPE" 
    TCGA-F1-6874 
"PID1 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D86V2, continuous
D86V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PID1 MUTATED      1    4
  PID1 WILD-TYPE   52   75
        clus
vv       PID1 MUTATED PID1 WILD-TYPE
  FEMALE            1             52
  MALE              4             75
D86V4, multiclass
D86V5, multiclass
    clus
vv   PID1 MUTATED PID1 WILD-TYPE
  T1            0              4
  T2            3             43
  T3            1             45
  T4            0             15
D86V6, multiclass
    clus
vv   PID1 MUTATED PID1 WILD-TYPE
  N0            2             33
  N1            0             47
  N2            0             20
  N3            1             11
D86V7, multiclass
    clus
vv   PID1 MUTATED PID1 WILD-TYPE
  M0            4            111
  M1            0             13
  MX            1              3
D86V8, multiclass
     clus
vv    PID1 MUTATED PID1 WILD-TYPE
  I              2             16
  II             0             32
  III            1             32
  IV             0             21
D86V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PID1 MUTATED      0    5
  PID1 WILD-TYPE    8  119
     clus
vv    PID1 MUTATED PID1 WILD-TYPE
  NO             0              8
  YES            5            119

Clustering(87) Variable = AVP MUTATION ANALYSIS
D87V1, survival
               sevent
clus2            0  1
  AVP MUTATED    2  0
  AVP WILD-TYPE 69 14
  AVP MUTATED AVP WILD-TYPE 
            2            83 
  AVP MUTATED AVP WILD-TYPE 
            0            14 
$`AVP MUTATED`
TCGA-BR-6565 TCGA-CG-5730 
        0.62         4.01 

$`AVP WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 
       12.03        15.02        28.96        31.04        65.10        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  AVP MUTATED AVP WILD-TYPE 
         0.62          0.07 
  AVP MUTATED AVP WILD-TYPE 
         4.01         70.06 
  AVP MUTATED AVP WILD-TYPE 
        2.315         4.040 
[1] "0.6 - 4.0 (2.3)"  "0.1 - 70.1 (4.0)"
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"AVP WILD-TYPE" "AVP WILD-TYPE"   "AVP MUTATED" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
  "AVP MUTATED" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"AVP WILD-TYPE" "AVP WILD-TYPE"   "AVP MUTATED" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
  "AVP MUTATED" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"AVP WILD-TYPE" "AVP WILD-TYPE"   "AVP MUTATED" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
  "AVP MUTATED" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
[1] "Remove cluster labels:" "AVP MUTATED"           
clus
  AVP MUTATED AVP WILD-TYPE 
            2            83 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813    TCGA-CG-4300 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441    TCGA-CG-4443 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460    TCGA-CG-4462 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472    TCGA-CG-4474 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5732 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
   TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"AVP WILD-TYPE" "AVP WILD-TYPE" "AVP WILD-TYPE" 
D87V2, continuous
D87V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  AVP MUTATED      1    2
  AVP WILD-TYPE   52   77
        clus
vv       AVP MUTATED AVP WILD-TYPE
  FEMALE           1            52
  MALE             2            77
D87V4, multiclass
D87V5, multiclass
    clus
vv   AVP MUTATED AVP WILD-TYPE
  T1           0             4
  T2           1            45
  T3           2            44
  T4           0            15
D87V6, multiclass
    clus
vv   AVP MUTATED AVP WILD-TYPE
  N0           1            34
  N1           2            45
  N2           0            20
  N3           0            12
D87V7, multiclass
    clus
vv   AVP MUTATED AVP WILD-TYPE
  M0           1           114
  M1           1            12
  MX           1             3
D87V8, multiclass
     clus
vv    AVP MUTATED AVP WILD-TYPE
  I             0            18
  II            1            31
  III           1            32
  IV            1            20
D87V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  AVP MUTATED      0    3
  AVP WILD-TYPE    8  121
     clus
vv    AVP MUTATED AVP WILD-TYPE
  NO            0             8
  YES           3           121
                 V1.D                    V2                    V3 
      "Time to Death"                 "AGE"              "GENDER" 
                   V4                    V5                    V6 
  "HISTOLOGICAL.TYPE"         "PATHOLOGY.T"         "PATHOLOGY.N" 
                   V7                    V8                    V9 
"PATHOLOGICSPREAD(M)"         "TUMOR.STAGE" "NEOADJUVANT.THERAPY" 
> q(save="no")
