
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_TopgenesforCluster.35.3911/Topgenes_v1.R")
> result <- main("-s/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_TopgenesforCluster.35.3911/", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/STAD/2009050/0.GDAC_MethylationPreprocess.Finished/STAD.meth.for_clustering.filtered_data.txt", "-u5549", "-ooutputprefix")
Cluster size 5549 broken into 2752 2797 
Cluster size 2752 broken into 1075 1677 
Done cluster 1075 
Cluster size 1677 broken into 1048 629 
Done cluster 1048 
Done cluster 629 
Done cluster 1677 
Done cluster 2752 
Cluster size 2797 broken into 1660 1137 
Cluster size 1660 broken into 817 843 
Done cluster 817 
Done cluster 843 
Done cluster 1660 
Done cluster 1137 
Done cluster 2797 
> q(save="no")
