Clinical Features	Time to Death		AGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		HISTOLOGICAL.TYPE		PATHOLOGY.T		PATHOLOGY.N		PATHOLOGICSPREAD(M)		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NEOADJUVANT.THERAPY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	38 (13%)	250	0.93136	1	0.002924	1	0.86275	1	0.53038	1	0.97903	1	0.69437	1	0.0029999	1	0.73926	1	0.0025023	1	0.48513	1	0.8127	1
1q gain	112 (39%)	176	0.76352	1	0.48973	1	0.54554	1	0.60445	1	0.60838	1	0.63388	1	0.035841	1	0.338	1	0.036393	1	0.62882	1	0.2394	1
2p gain	36 (12%)	252	0.13422	1	0.065825	1	0.030778	1	0.73999	1	0.7824	1	0.069366	1	0.67395	1	0.081543	1	0.11702	1	1	1	0.80525	1
2q gain	30 (10%)	258	0.20006	1	0.23468	1	0.24701	1	NA	NA	0.22412	1	0.27045	1	0.96245	1	0.096887	1	0.22808	1	0.70407	1	1	1
3p gain	9 (3%)	279	0.12224	1	0.65791	1	0.73664	1	NA	NA	0.90528	1	0.085358	1	0.62259	1	0.54521	1	0.4257	1	0.4638	1	0.63123	1
3q gain	18 (6%)	270	0.10459	1	0.67682	1	0.80877	1	NA	NA	0.98009	1	0.86617	1	0.2915	1	0.90967	1	0.54907	1	0.33649	1	0.49379	1
4p gain	21 (7%)	267	0.64082	1	0.014059	1	0.36381	1	NA	NA	0.060619	1	0.22088	1	0.89565	1	0.090215	1	0.27064	1	1	1	1	1
4q gain	8 (3%)	280	0.62066	1	0.56105	1	0.14847	1	NA	NA	6.3922e-05	0.0527	0.082493	1	0.36425	1	0.50535	1	0.6435	1	0.42477	1	1	1
5p gain	113 (39%)	175	0.54985	1	0.15435	1	1	1	0.69137	1	0.29588	1	0.49456	1	0.81764	1	0.62848	1	0.98519	1	0.093909	1	0.61592	1
5q gain	37 (13%)	251	0.66972	1	0.75377	1	0.37725	1	NA	NA	0.82019	1	0.67975	1	0.60421	1	0.52208	1	0.77956	1	0.079834	1	0.13793	1
6p gain	39 (14%)	249	0.90271	1	0.90028	1	0.60509	1	0.93978	1	0.69477	1	0.62988	1	0.24782	1	0.78766	1	0.81381	1	1	1	0.63307	1
6q gain	9 (3%)	279	0.36849	1	0.31469	1	0.041942	1	NA	NA	0.99845	1	1	1	0.70879	1	0.54521	1	0.52773	1	1	1	0.63123	1
7p gain	99 (34%)	189	0.23905	1	0.055592	1	0.90136	1	0.2246	1	0.45042	1	0.16188	1	0.016519	1	0.088009	1	0.047857	1	0.61826	1	0.60523	1
7q gain	70 (24%)	218	0.90738	1	0.0054665	1	0.33465	1	0.9196	1	0.65721	1	0.36632	1	0.20839	1	0.054982	1	0.038371	1	0.41823	1	0.44474	1
8p gain	33 (11%)	255	0.3327	1	0.00062902	0.517	0.19354	1	NA	NA	0.89681	1	0.68113	1	1	1	0.25467	1	0.96124	1	0.46573	1	0.12956	1
8q gain	91 (32%)	197	0.92018	1	0.00027549	0.227	0.44604	1	0.35155	1	0.63535	1	0.86865	1	0.47815	1	0.36814	1	0.53539	1	0.7995	1	0.59841	1
9p gain	5 (2%)	283	0.21215	1	0.62497	1	0.18287	1	NA	NA	0.99917	1	0.44089	1	0.82474	1	1	1	1	1	1	1	1	1
9q gain	3 (1%)	285	0.059247	1	0.22707	1	1	1	NA	NA	0.99999	1	0.70872	1	1	1	0.63008	1	1	1	1	1	1	1
10p gain	31 (11%)	257	0.95125	1	0.18034	1	0.18217	1	0.92149	1	0.27676	1	0.63362	1	0.17336	1	0.89148	1	0.52211	1	0.70451	1	1	1
10q gain	18 (6%)	270	0.83521	1	0.62283	1	0.224	1	NA	NA	0.13108	1	0.39821	1	0.22709	1	0.55051	1	0.3203	1	1	1	1	1
11p gain	23 (8%)	265	0.73945	1	0.10769	1	0.38334	1	NA	NA	0.68481	1	0.71222	1	0.49238	1	1	1	0.44135	1	1	1	0.76316	1
11q gain	33 (11%)	255	0.37857	1	0.00079515	0.653	0.093906	1	0.74476	1	0.79096	1	0.61778	1	0.57915	1	0.51907	1	0.15479	1	0.46573	1	0.79783	1
12p gain	38 (13%)	250	0.80434	1	0.0018926	1	0.72735	1	NA	NA	0.70513	1	0.14734	1	0.064984	1	1	1	0.02813	1	1	1	1	1
12q gain	31 (11%)	257	0.7557	1	0.0010499	0.861	0.44912	1	NA	NA	0.7649	1	0.13741	1	0.1231	1	0.73373	1	0.06874	1	0.70451	1	0.59556	1
13q gain	15 (5%)	273	0.57531	1	0.53273	1	1	1	NA	NA	0.98128	1	0.10865	1	0.45332	1	0.13573	1	0.52982	1	1	1	0.25876	1
14q gain	32 (11%)	256	0.29739	1	0.16687	1	0.19093	1	0.8198	1	0.049021	1	0.51736	1	0.33841	1	0.61818	1	0.72301	1	0.14466	1	0.79764	1
15q gain	10 (3%)	278	0.27775	1	0.38024	1	0.75835	1	NA	NA	0.089741	1	0.67789	1	0.35055	1	0.44178	1	0.20911	1	1	1	1	1
16p gain	38 (13%)	250	0.49191	1	0.22961	1	0.86275	1	0.33159	1	0.66109	1	0.43487	1	0.40948	1	0.52208	1	0.44652	1	0.72493	1	0.33122	1
16q gain	26 (9%)	262	0.66209	1	0.27059	1	0.41558	1	0.29858	1	0.47315	1	0.34379	1	0.51696	1	0.41789	1	0.5292	1	1	1	0.5679	1
17p gain	17 (6%)	271	0.50283	1	0.64004	1	0.31993	1	0.22642	1	0.07998	1	0.88349	1	0.59901	1	0.4271	1	0.4594	1	0.018686	1	0.30585	1
17q gain	48 (17%)	240	0.20489	1	0.35748	1	1	1	0.40983	1	0.24162	1	0.029866	1	0.5169	1	0.023239	1	0.027019	1	0.10305	1	0.27138	1
18p gain	20 (7%)	268	0.44634	1	0.2023	1	0.81704	1	NA	NA	0.33811	1	1	1	1	1	0.91601	1	0.92706	1	1	1	0.52216	1
18q gain	15 (5%)	273	0.46829	1	0.23487	1	0.6018	1	NA	NA	0.10829	1	1	1	0.8667	1	0.41923	1	0.71501	1	1	1	0.25876	1
19p gain	4 (1%)	284	0.33034	1	0.13469	1	1	1	NA	NA	0.99273	1	0.3352	1	0.33615	1	0.24395	1	0.16258	1	1	1	0.1119	1
19q gain	11 (4%)	277	0.76163	1	0.92486	1	1	1	NA	NA	0.99284	1	0.37406	1	0.83213	1	0.28697	1	0.70262	1	1	1	1	1
20p gain	40 (14%)	248	0.70016	1	0.28604	1	0.86516	1	0.59076	1	0.74926	1	0.40493	1	0.45538	1	0.85868	1	0.19323	1	0.73498	1	0.015517	1
20q gain	47 (16%)	241	0.58252	1	0.14731	1	0.33709	1	0.14842	1	0.73533	1	0.13905	1	0.92164	1	0.59541	1	0.81017	1	0.33042	1	0.024542	1
21q gain	26 (9%)	262	0.49177	1	0.56806	1	0.14778	1	NA	NA	0.63998	1	0.62647	1	0.55674	1	0.41789	1	0.93383	1	1	1	0.25444	1
22q gain	14 (5%)	274	0.22974	1	0.20331	1	1	1	NA	NA	0.44641	1	0.073302	1	0.060514	1	0.61136	1	0.32121	1	1	1	0.045716	1
Xq gain	11 (4%)	277	0.18283	1	0.26389	1	0.75936	1	NA	NA	0.4652	1	0.60829	1	0.83213	1	0.58968	1	0.60611	1	0.53447	1	0.38286	1
1p loss	21 (7%)	267	0.41184	1	0.99324	1	0.17169	1	NA	NA	0.92449	1	0.9075	1	0.69179	1	0.38673	1	0.086082	1	0.15127	1	1	1
1q loss	9 (3%)	279	6.5155e-05	0.0537	0.6671	1	0.73664	1	NA	NA	0.62114	1	0.79224	1	0.065321	1	1	1	0.16501	1	0.1125	1	1	1
2p loss	3 (1%)	285	NA	NA	NA	NA	1	1	NA	NA	0.99784	1	1	1	1	1	0.63008	1	1	1	1	1	0.39302	1
3p loss	56 (19%)	232	0.90338	1	0.63976	1	0.76549	1	0.026773	1	0.89067	1	0.19726	1	0.3791	1	0.17744	1	0.0033051	1	0.77072	1	0.30649	1
3q loss	30 (10%)	258	0.83135	1	0.65463	1	0.44089	1	0.058272	1	0.99298	1	0.33079	1	0.33841	1	0.68261	1	0.10645	1	1	1	0.42675	1
4p loss	26 (9%)	262	0.47117	1	0.026966	1	0.10219	1	0.69439	1	0.66108	1	0.31956	1	0.26482	1	0.6503	1	0.47876	1	0.39503	1	0.5679	1
4q loss	31 (11%)	257	0.52668	1	0.048388	1	0.012479	1	0.94633	1	0.96873	1	0.15491	1	0.0081352	1	0.51372	1	0.06451	1	0.13377	1	0.79685	1
5p loss	8 (3%)	280	0.93782	1	0.24192	1	0.14847	1	NA	NA	0.22376	1	0.751	1	0.58862	1	0.50535	1	0.76106	1	1	1	0.1071	1
5q loss	39 (14%)	249	0.55249	1	0.068282	1	0.0018149	1	0.73829	1	0.069947	1	0.8756	1	0.070912	1	0.47369	1	0.3767	1	0.48662	1	0.1537	1
6p loss	23 (8%)	265	0.80475	1	0.16939	1	0.079062	1	NA	NA	0.46782	1	0.66416	1	0.61367	1	0.17315	1	0.63207	1	0.6552	1	1	1
6q loss	63 (22%)	225	0.77608	1	0.52259	1	0.39334	1	0.017989	1	0.50284	1	0.25855	1	0.34615	1	0.43222	1	0.42907	1	0.57609	1	1	1
7p loss	10 (3%)	278	0.82063	1	0.23248	1	1	1	NA	NA	0.43468	1	1	1	0.28214	1	0.44178	1	0.25386	1	0.50032	1	1	1
7q loss	11 (4%)	277	0.71301	1	0.18982	1	0.55697	1	NA	NA	0.019263	1	0.89351	1	0.69115	1	1	1	0.67708	1	0.53447	1	0.67772	1
8p loss	75 (26%)	213	0.61601	1	0.67257	1	0.89337	1	0.1415	1	0.044898	1	0.09311	1	0.91027	1	0.6975	1	0.89781	1	0.78887	1	1	1
8q loss	10 (3%)	278	0.18	1	0.59027	1	1	1	NA	NA	5.3113e-05	0.0439	0.67734	1	0.81324	1	0.12263	1	1	1	1	1	0.65341	1
9p loss	90 (31%)	198	0.006933	1	0.058698	1	0.16115	1	0.89664	1	0.57511	1	0.18069	1	0.026746	1	0.94694	1	0.057507	1	1	1	0.48032	1
9q loss	75 (26%)	213	0.31304	1	0.35848	1	0.89337	1	0.94693	1	0.28817	1	0.26182	1	0.18999	1	0.66877	1	0.36913	1	0.4192	1	0.8529	1
10p loss	23 (8%)	265	0.30252	1	0.62576	1	0.13318	1	NA	NA	0.32664	1	0.89816	1	0.48286	1	0.42383	1	0.89186	1	0.37992	1	1	1
10q loss	25 (9%)	263	0.33156	1	0.17462	1	1	1	NA	NA	0.0011497	0.942	0.32077	1	0.10689	1	1	1	0.16114	1	0.38868	1	1	1
11p loss	22 (8%)	266	0.19334	1	0.0027056	1	0.50517	1	NA	NA	0.40094	1	0.93222	1	0.062416	1	0.046639	1	0.034591	1	1	1	0.75653	1
11q loss	16 (6%)	272	0.1203	1	0.82731	1	1	1	0.73829	1	0.47105	1	0.87221	1	0.87601	1	0.05139	1	0.97499	1	0.28504	1	0.07842	1
12p loss	25 (9%)	263	0.35027	1	0.77396	1	0.83662	1	0.56103	1	0.107	1	0.61169	1	1	1	0.30697	1	0.54446	1	0.67449	1	0.39175	1
12q loss	18 (6%)	270	0.069755	1	0.87069	1	0.4671	1	NA	NA	0.078268	1	0.48115	1	0.37478	1	0.36524	1	0.29304	1	0.61798	1	1	1
13q loss	66 (23%)	222	0.14198	1	0.23211	1	0.32578	1	0.65241	1	0.38403	1	0.90675	1	0.13766	1	0.40422	1	0.39126	1	0.77781	1	0.44164	1
14q loss	29 (10%)	259	0.55114	1	0.86907	1	0.55821	1	0.65405	1	0.20588	1	0.62349	1	1	1	0.26282	1	0.87783	1	0.42052	1	0.17442	1
15q loss	64 (22%)	224	0.75046	1	0.047296	1	0.3942	1	0.91855	1	0.080947	1	0.77454	1	0.97923	1	0.93362	1	0.89083	1	0.77492	1	0.43067	1
16p loss	24 (8%)	264	0.7009	1	0.14379	1	0.40206	1	NA	NA	0.4626	1	0.93919	1	0.95304	1	0.0084512	1	0.061516	1	0.20269	1	0.3857	1
16q loss	42 (15%)	246	0.167	1	0.13984	1	0.6166	1	0.79611	1	0.15171	1	0.16301	1	0.43514	1	0.15597	1	0.14617	1	0.74626	1	1	1
17p loss	73 (25%)	215	0.81917	1	0.65067	1	0.49994	1	0.13713	1	0.73547	1	0.57222	1	0.45561	1	0.91313	1	0.30229	1	0.17323	1	1	1
17q loss	11 (4%)	277	0.22335	1	0.89556	1	1	1	NA	NA	0.48422	1	0.54329	1	0.83213	1	0.36022	1	0.70262	1	1	1	0.38286	1
18p loss	46 (16%)	242	0.4956	1	0.04279	1	0.7496	1	0.010322	1	0.29931	1	0.16225	1	0.3902	1	0.038599	1	0.0045302	1	0.32802	1	0.65717	1
18q loss	74 (26%)	214	0.021065	1	0.24947	1	1	1	0.57028	1	0.47655	1	0.16722	1	0.34048	1	0.21751	1	0.0046957	1	0.17317	1	0.57451	1
19p loss	79 (27%)	209	0.027858	1	0.36727	1	0.011684	1	0.80044	1	0.53061	1	0.23622	1	0.017606	1	0.098549	1	0.16237	1	1	1	0.35838	1
19q loss	44 (15%)	244	0.090362	1	0.40455	1	0.41194	1	NA	NA	0.1314	1	0.27033	1	0.36932	1	0.045241	1	0.30695	1	0.50638	1	1	1
20p loss	43 (15%)	245	0.15185	1	0.40113	1	1	1	NA	NA	0.3039	1	0.20144	1	0.042018	1	0.20462	1	0.057428	1	1	1	0.49515	1
20q loss	15 (5%)	273	0.37913	1	0.32424	1	1	1	NA	NA	0.36503	1	0.86436	1	0.6494	1	0.32559	1	0.49662	1	1	1	1	1
21q loss	42 (15%)	246	0.84107	1	0.71984	1	0.029153	1	0.099064	1	0.57095	1	0.87724	1	0.72844	1	0.83056	1	0.76847	1	0.4962	1	1	1
22q loss	65 (23%)	223	0.79872	1	0.2242	1	0.090227	1	0.47549	1	0.80107	1	0.81257	1	0.92009	1	0.18529	1	0.99075	1	0.15314	1	1	1
Xq loss	6 (2%)	282	0.27652	1	0.32642	1	0.41792	1	NA	NA	0.0092125	1	0.34912	1	1	1	1	1	0.53683	1	0.052831	1	1	1