Clinical Features	Time to Death		AGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		HISTOLOGICAL.TYPE		PATHOLOGY.T		PATHOLOGY.N		PATHOLOGICSPREAD(M)		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NEOADJUVANT.THERAPY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	20 (7%)	287	0.87541	1	0.59197	1	0.18504	1	NA	NA	4.2722e-06	0.00364	0.10846	1	0.8296	1	0.30579	1	0.24382	1	0.52943	1	0.41801	1
1q gain	64 (21%)	243	0.61123	1	0.78754	1	1	1	0.44551	1	0.0037856	1	0.15789	1	0.77233	1	0.16444	1	0.52493	1	1	1	0.47109	1
2p gain	73 (24%)	234	0.5916	1	0.73025	1	0.068782	1	0.19789	1	0.012072	1	0.13282	1	0.12062	1	0.13798	1	0.12129	1	0.13971	1	0.17066	1
2q gain	32 (10%)	275	0.22191	1	0.83848	1	1	1	0.9498	1	3.5452e-05	0.03	0.22158	1	0.58992	1	0.31043	1	0.0086738	1	0.095216	1	0.52255	1
3p gain	33 (11%)	274	0.41526	1	0.051212	1	0.14701	1	0.26429	1	0.97793	1	0.055246	1	0.91115	1	0.47613	1	0.50245	1	1	1	0.75261	1
3q gain	136 (44%)	171	0.6624	1	0.18375	1	0.89654	1	0.23169	1	0.34513	1	0.5837	1	0.90473	1	0.40904	1	0.68845	1	1	1	0.076077	1
4p gain	11 (4%)	296	0.96378	1	0.62829	1	0.072586	1	0.79563	1	0.64955	1	0.042084	1	0.83293	1	1	1	0.683	1	1	1	0.60798	1
4q gain	5 (2%)	302	0.54013	1	0.50147	1	0.33171	1	NA	NA	0.12587	1	0.033869	1	0.7914	1	1	1	0.11767	1	1	1	1	1
5p gain	141 (46%)	166	0.48229	1	0.093573	1	0.3624	1	0.69309	1	0.31549	1	0.049857	1	0.55802	1	0.35777	1	0.69511	1	1	1	0.84607	1
5q gain	32 (10%)	275	0.79495	1	0.443	1	1	1	0.52299	1	0.97719	1	0.92858	1	0.45238	1	0.38332	1	0.36819	1	0.32096	1	1	1
6p gain	29 (9%)	278	0.74571	1	0.22579	1	0.82634	1	0.22478	1	0.032452	1	0.10611	1	0.91875	1	0.29077	1	0.17609	1	0.27863	1	1	1
6q gain	16 (5%)	291	0.78622	1	0.25744	1	1	1	0.4279	1	0.00090092	0.757	0.62275	1	0.66669	1	1	1	0.95348	1	0.45056	1	0.6543	1
7p gain	84 (27%)	223	0.30047	1	0.44463	1	0.6625	1	0.61899	1	0.74001	1	0.01091	1	0.73625	1	0.32443	1	0.45054	1	0.73324	1	0.66364	1
7q gain	81 (26%)	226	0.44977	1	0.69499	1	0.38073	1	0.33258	1	0.47387	1	0.025113	1	0.75852	1	0.18751	1	0.32309	1	0.73373	1	0.82834	1
8p gain	43 (14%)	264	0.8877	1	0.45569	1	0.85148	1	0.011738	1	0.10039	1	0.54883	1	0.70747	1	0.098737	1	0.24847	1	0.18873	1	0.15319	1
8q gain	85 (28%)	222	0.36541	1	0.54332	1	0.56449	1	0.19348	1	0.88443	1	0.11613	1	0.73199	1	0.084296	1	0.046863	1	0.1847	1	0.38918	1
9p gain	19 (6%)	288	0.21041	1	0.68826	1	0.28476	1	NA	NA	0.0021734	1	0.56934	1	0.68487	1	1	1	0.74017	1	1	1	0.69728	1
9q gain	28 (9%)	279	0.18858	1	0.37218	1	0.82157	1	0.60153	1	0.47117	1	0.42757	1	0.77878	1	0.21433	1	0.65271	1	0.60743	1	0.31866	1
10p gain	15 (5%)	292	0.81518	1	0.97717	1	0.76682	1	0.85169	1	0.97041	1	0.35149	1	0.094928	1	0.13229	1	0.018315	1	0.42905	1	0.15884	1
10q gain	6 (2%)	301	0.3528	1	0.72344	1	1	1	NA	NA	0.99504	1	0.49433	1	0.46346	1	1	1	0.52088	1	0.1981	1	0.10186	1
11p gain	17 (6%)	290	0.97851	1	0.48352	1	0.25531	1	8.7375e-06	0.00741	0.9624	1	0.001954	1	0.4393	1	1	1	0.58379	1	0.47133	1	0.66803	1
11q gain	20 (7%)	287	0.7134	1	0.92312	1	0.3018	1	0.45237	1	0.92314	1	0.029405	1	0.23318	1	0.53096	1	0.1064	1	0.52943	1	0.41801	1
12p gain	85 (28%)	222	0.80499	1	0.79457	1	0.0086455	1	0.36832	1	0.88443	1	0.081853	1	0.76022	1	0.7335	1	0.8612	1	0.50427	1	0.19725	1
12q gain	38 (12%)	269	0.62626	1	0.51169	1	0.073737	1	0.9582	1	0.97827	1	0.12885	1	0.1555	1	0.22431	1	0.22665	1	1	1	0.14829	1
13q gain	6 (2%)	301	0.097858	1	0.58701	1	1	1	NA	NA	0.99504	1	0.15135	1	1	1	0.47035	1	0.7615	1	1	1	1	1
14q gain	31 (10%)	276	0.064213	1	0.091776	1	0.51743	1	0.93734	1	0.97615	1	0.32277	1	0.69612	1	0.66715	1	0.93883	1	1	1	0.19213	1
15q gain	27 (9%)	280	0.68436	1	0.80798	1	1	1	0.36481	1	0.44015	1	0.67634	1	0.23636	1	0.6494	1	0.41061	1	1	1	0.72982	1
16p gain	14 (5%)	293	0.20266	1	0.21696	1	0.5325	1	0.058436	1	0.79299	1	0.026586	1	0.54233	1	1	1	0.43053	1	1	1	0.37697	1
16q gain	18 (6%)	289	0.62183	1	0.066135	1	0.17253	1	0.30457	1	0.95807	1	0.0078436	1	0.14934	1	0.26683	1	0.083048	1	1	1	0.68244	1
17p gain	7 (2%)	300	0.36867	1	0.28302	1	0.19629	1	NA	NA	9.5991e-09	8.19e-06	0.2489	1	0.36695	1	0.52421	1	0.054225	1	1	1	1	1
17q gain	33 (11%)	274	0.51327	1	0.28303	1	0.05953	1	0.32604	1	0.60765	1	0.6165	1	0.020342	1	0.22307	1	0.098513	1	0.33504	1	0.75261	1
18p gain	50 (16%)	257	0.16215	1	0.12198	1	0.2169	1	0.39603	1	0.85079	1	0.22005	1	0.024357	1	0.16058	1	0.24198	1	0.69599	1	0.44102	1
18q gain	36 (12%)	271	0.3846	1	0.40625	1	0.54574	1	0.63889	1	0.67356	1	0.30869	1	0.098287	1	0.51493	1	0.82358	1	0.62451	1	0.35916	1
19p gain	31 (10%)	276	0.542	1	0.41355	1	0.82943	1	7.921e-06	0.00673	5.0535e-06	0.0043	0.69903	1	0.39065	1	0.66715	1	0.58831	1	0.30685	1	1	1
19q gain	45 (15%)	262	0.75455	1	0.76924	1	1	1	0.18348	1	0.00082748	0.696	0.91522	1	0.14426	1	0.10936	1	0.072527	1	0.66712	1	0.4042	1
20p gain	86 (28%)	221	0.81165	1	0.075682	1	0.042043	1	0.18999	1	0.17289	1	0.95283	1	0.73983	1	0.084296	1	0.18581	1	0.18981	1	0.66997	1
20q gain	74 (24%)	233	0.71356	1	0.20887	1	0.12886	1	0.76387	1	0.01346	1	0.89102	1	0.52883	1	0.064029	1	0.10534	1	0.14222	1	0.82041	1
21q gain	18 (6%)	289	0.2603	1	0.65044	1	1	1	0.99644	1	0.00012231	0.103	0.2847	1	0.2605	1	0.71066	1	0.18779	1	0.49138	1	0.01892	1
22q gain	72 (23%)	235	0.086611	1	0.35931	1	0.28474	1	0.67407	1	0.9062	1	0.13352	1	0.66509	1	0.84368	1	0.38974	1	0.72369	1	0.82097	1
Xq gain	9 (3%)	298	0.90294	1	0.27162	1	1	1	0.95186	1	0.98901	1	0.45761	1	0.89689	1	0.61651	1	0.59314	1	1	1	0.20481	1
1p loss	46 (15%)	261	0.53208	1	0.70194	1	0.003109	1	0.54064	1	0.12245	1	0.30169	1	0.49433	1	0.21597	1	0.3703	1	0.21813	1	1	1
1q loss	9 (3%)	298	0.70147	1	0.25826	1	0.45461	1	NA	NA	0.98901	1	0.34906	1	0.69912	1	0.61651	1	0.91597	1	0.28311	1	1	1
2q loss	8 (3%)	299	0.052178	1	0.074787	1	1	1	NA	NA	0.99128	1	0.53494	1	0.66021	1	1	1	0.60963	1	1	1	0.55224	1
3p loss	136 (44%)	171	0.38282	1	0.14141	1	0.89654	1	0.11619	1	0.40407	1	0.98456	1	0.9184	1	0.88299	1	0.94878	1	0.54625	1	0.24187	1
3q loss	27 (9%)	280	0.5926	1	0.27349	1	1	1	0.74506	1	0.024007	1	0.44488	1	0.097301	1	0.21433	1	0.18042	1	0.60743	1	0.3027	1
4p loss	130 (42%)	177	0.15169	1	0.71443	1	1	1	0.22737	1	0.4057	1	0.38875	1	0.32179	1	0.25701	1	0.053964	1	1	1	0.32556	1
4q loss	112 (36%)	195	0.11803	1	0.61919	1	0.13743	1	0.096842	1	0.23529	1	0.56988	1	0.85909	1	0.20385	1	0.15592	1	0.53754	1	0.22307	1
5p loss	19 (6%)	288	0.029745	1	0.30086	1	0.42023	1	0.78687	1	0.0033586	1	0.1839	1	0.37631	1	0.73747	1	0.50275	1	0.14292	1	0.091462	1
5q loss	112 (36%)	195	0.1478	1	0.83773	1	0.59109	1	0.28543	1	0.23529	1	0.022938	1	0.3304	1	0.28006	1	0.0076091	1	0.53754	1	0.55109	1
6p loss	33 (11%)	274	0.44567	1	0.4159	1	0.14701	1	0.93858	1	0.026659	1	0.042832	1	0.37518	1	0.69226	1	0.088619	1	0.61502	1	0.5327	1
6q loss	35 (11%)	272	0.85998	1	0.65002	1	0.68732	1	0.69563	1	0.037388	1	0.09038	1	0.25406	1	0.71166	1	0.27766	1	0.621	1	0.55231	1
7p loss	19 (6%)	288	0.73019	1	0.50325	1	0.78933	1	0.86115	1	0.95354	1	0.3304	1	0.20193	1	1	1	0.58748	1	0.51074	1	1	1
7q loss	11 (4%)	296	0.63686	1	0.93596	1	0.73422	1	NA	NA	0.98376	1	0.089305	1	0.47929	1	1	1	0.75941	1	0.33515	1	0.60798	1
8p loss	93 (30%)	214	0.52146	1	0.22667	1	0.57347	1	0.43608	1	0.85619	1	0.18445	1	0.71857	1	0.31599	1	0.69563	1	0.18263	1	0.52883	1
8q loss	9 (3%)	298	0.48856	1	0.67196	1	0.45461	1	0.4279	1	0.50563	1	0.76413	1	0.7972	1	1	1	1	1	1	1	0.20481	1
9p loss	125 (41%)	182	0.62009	1	0.29392	1	0.35787	1	0.088769	1	0.40241	1	0.78823	1	0.46583	1	0.68006	1	0.66919	1	0.76282	1	0.55396	1
9q loss	78 (25%)	229	0.98599	1	0.0037757	1	0.55174	1	0.52714	1	0.15421	1	0.35689	1	0.62405	1	0.57046	1	0.51094	1	1	1	0.82317	1
10p loss	66 (21%)	241	0.5014	1	0.76662	1	0.20792	1	0.89573	1	0.352	1	0.70806	1	0.16539	1	0.37363	1	0.15785	1	0.12912	1	0.64292	1
10q loss	66 (21%)	241	0.42775	1	0.81812	1	0.75396	1	0.70759	1	0.35269	1	0.89942	1	0.59584	1	0.40325	1	0.13166	1	0.12912	1	0.35026	1
11p loss	47 (15%)	260	0.38483	1	0.42763	1	0.72106	1	0.61967	1	0.20637	1	0.58673	1	0.49216	1	0.33602	1	0.82478	1	0.38371	1	0.78626	1
11q loss	30 (10%)	277	0.81781	1	0.03424	1	0.51586	1	0.91453	1	0.89117	1	0.5837	1	0.23871	1	0.81269	1	0.67565	1	0.29273	1	0.092473	1
12p loss	5 (2%)	302	0.52891	1	0.002393	1	0.60812	1	NA	NA	2.071e-12	1.77e-09	0.16158	1	0.7914	1	0.41061	1	0.37817	1	1	1	0.39321	1
12q loss	4 (1%)	303	0.88201	1	0.19975	1	0.27909	1	NA	NA	1.185e-15	1.01e-12	0.18622	1	0.55534	1	0.34439	1	0.29168	1	1	1	0.32898	1
13q loss	116 (38%)	191	0.014346	1	0.7124	1	0.5032	1	0.13477	1	0.33656	1	0.97725	1	0.13255	1	0.39559	1	0.022651	1	0.75296	1	0.42635	1
14q loss	54 (18%)	253	0.13246	1	0.12333	1	0.025599	1	0.31596	1	0.15741	1	0.025223	1	0.17893	1	0.65282	1	0.45064	1	0.41619	1	1	1
15q loss	36 (12%)	271	0.78655	1	0.36695	1	0.070429	1	0.44551	1	0.068372	1	0.095265	1	0.026401	1	0.6041	1	0.0094802	1	1	1	1	1
16p loss	45 (15%)	262	0.22098	1	0.37368	1	0.8561	1	8.7375e-06	0.00741	0.77698	1	0.83985	1	0.68528	1	0.88416	1	0.95233	1	1	1	0.27833	1
16q loss	57 (19%)	250	0.1232	1	0.064777	1	0.1822	1	7.921e-06	0.00673	0.67045	1	0.77489	1	0.35245	1	0.31646	1	0.68492	1	0.43442	1	0.62023	1
17p loss	111 (36%)	196	0.33352	1	0.79352	1	0.5903	1	0.019087	1	0.5517	1	0.42536	1	0.19259	1	0.46865	1	0.94066	1	0.53441	1	0.84114	1
17q loss	19 (6%)	288	0.57576	1	0.22545	1	0.10997	1	8.7375e-06	0.00741	0.95354	1	0.43774	1	0.78355	1	0.076334	1	0.26008	1	0.51074	1	0.69728	1
18p loss	30 (10%)	277	0.38463	1	0.84348	1	0.51586	1	0.61825	1	0.89117	1	0.82448	1	0.19582	1	0.35807	1	0.17143	1	0.60905	1	0.75229	1
18q loss	60 (20%)	247	0.67392	1	0.062927	1	0.072121	1	0.52714	1	0.31663	1	0.29364	1	0.85296	1	0.41218	1	0.92302	1	0.69815	1	1	1
19p loss	50 (16%)	257	0.063496	1	0.96444	1	1	1	0.080628	1	0.14123	1	0.43241	1	0.13317	1	0.35893	1	0.20165	1	0.020153	1	0.28648	1
19q loss	33 (11%)	274	0.44516	1	0.30499	1	0.8362	1	0.40523	1	0.0014775	1	0.76898	1	0.31722	1	0.68326	1	0.82635	1	0.1026	1	1	1
20p loss	15 (5%)	292	0.077464	1	0.68421	1	0.76682	1	NA	NA	0.97041	1	0.68349	1	0.4337	1	0.69814	1	0.089443	1	1	1	1	1
20q loss	16 (5%)	291	0.37766	1	0.69478	1	0.77001	1	NA	NA	0.96652	1	0.86142	1	0.42617	1	0.71066	1	0.69343	1	1	1	1	1
21q loss	97 (32%)	210	0.42393	1	0.32573	1	0.011498	1	0.7473	1	0.53815	1	0.5343	1	0.80608	1	0.10749	1	0.2151	1	0.74673	1	0.40937	1
22q loss	32 (10%)	275	0.65735	1	0.15223	1	0.056272	1	0.27486	1	0.0015081	1	0.26801	1	0.00038103	0.321	0.39728	1	0.0027701	1	1	1	0.52255	1
Xq loss	12 (4%)	295	0.75857	1	0.12461	1	0.51798	1	NA	NA	5.0714e-05	0.0428	0.83537	1	0.10853	1	1	1	0.60652	1	1	1	0.018773	1