Clinical Features	Time to Death		AGE		HISTOLOGICAL.TYPE		RADIATIONS.RADIATION.REGIMENINDICATION		NEOADJUVANT.THERAPY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p35.2)	40 (9%)	403	0.95946	1	0.00012377	0.0443	3.3322e-10	1.42e-07	1	1	0.04901	1
Amp Peak  2(1p34.2)	50 (11%)	393	0.57437	1	0.00013255	0.0473	3.5687e-16	1.64e-13	0.41293	1	0.03488	1
Amp Peak  3(1p22.3)	73 (16%)	370	0.70156	1	0.00057306	0.192	0.0094306	1	0.88915	1	0.22937	1
Amp Peak  4(1q21.3)	192 (43%)	251	0.16494	1	3.5509e-06	0.00138	0.0043132	1	0.60226	1	0.17595	1
Amp Peak  5(1q22)	204 (46%)	239	0.036696	1	1.6501e-07	6.72e-05	0.0002327	0.08	0.53342	1	0.82284	1
Amp Peak  6(1q42.3)	182 (41%)	261	0.25577	1	0.0011283	0.369	0.18233	1	0.59971	1	0.6512	1
Amp Peak  7(2p23.2)	93 (21%)	350	0.0056213	1	0.0026259	0.827	2.2066e-10	9.47e-08	0.055714	1	0.1733	1
Amp Peak  8(2q13)	88 (20%)	355	0.015043	1	0.00016319	0.0571	1.0017e-14	4.54e-12	0.79536	1	0.05059	1
Amp Peak  9(3p25.1)	60 (14%)	383	0.36795	1	0.00018841	0.0658	2.5682e-09	1.08e-06	0.17208	1	0.62425	1
Amp Peak 10(3p14.1)	48 (11%)	395	0.0042856	1	0.0088134	1	0.0037635	1	0.044069	1	1	1
Amp Peak 11(3q26.2)	128 (29%)	315	0.14279	1	3.511e-09	1.48e-06	6.1748e-22	2.96e-19	0.16989	1	0.0012597	0.409
Amp Peak 12(3q26.2)	121 (27%)	322	0.081507	1	3.656e-07	0.000147	1.0282e-22	4.95e-20	0.24522	1	0.0057653	1
Amp Peak 13(4p16.3)	39 (9%)	404	0.91601	1	1.7395e-06	0.000684	5.8942e-15	2.68e-12	0.71469	1	0.029846	1
Amp Peak 14(5p15.33)	64 (14%)	379	0.050969	1	0.0052911	1	2.61e-16	1.2e-13	0.55835	1	0.26529	1
Amp Peak 15(5q35.3)	39 (9%)	404	0.11043	1	0.00048875	0.165	3.2078e-07	0.000129	0.36538	1	0.55385	1
Amp Peak 16(6p24.2)	83 (19%)	360	0.84388	1	9.7783e-07	0.000387	1.6072e-17	7.52e-15	0.23191	1	0.15167	1
Amp Peak 17(6q25.1)	64 (14%)	379	0.81804	1	0.0091926	1	0.00016109	0.0567	0.55835	1	0.63352	1
Amp Peak 18(7q22.1)	69 (16%)	374	0.00049216	0.166	0.036077	1	0.043704	1	0.11654	1	1	1
Amp Peak 19(8p11.21)	130 (29%)	313	1.6147e-05	0.00615	0.46606	1	1.2254e-06	0.000483	0.041131	1	0.22054	1
Amp Peak 20(8q24.21)	161 (36%)	282	0.0010651	0.35	0.59417	1	5.8517e-11	2.53e-08	0.052283	1	0.0036236	1
Amp Peak 21(8q24.21)	169 (38%)	274	0.0057554	1	0.26266	1	1.0982e-11	4.79e-09	0.014038	1	0.015492	1
Amp Peak 22(9p24.2)	48 (11%)	395	0.75282	1	0.0052761	1	3.9037e-07	0.000156	0.18178	1	0.049069	1
Amp Peak 23(9q34.3)	31 (7%)	412	0.081586	1	0.00050804	0.171	2.2615e-06	0.000887	0.83938	1	0.12539	1
Amp Peak 24(10q22.2)	121 (27%)	322	0.19797	1	0.43077	1	0.18037	1	0.64242	1	0.044643	1
Amp Peak 25(11p11.2)	37 (8%)	406	0.037562	1	0.00022005	0.0761	2.9141e-07	0.000118	0.85155	1	0.22464	1
Amp Peak 26(11q13.2)	56 (13%)	387	0.096749	1	0.0010685	0.35	1.0739e-06	0.000424	1	1	0.028955	1
Amp Peak 27(12p12.1)	67 (15%)	376	0.75591	1	0.49016	1	2.2922e-06	0.000896	0.66442	1	1	1
Amp Peak 28(12q13.11)	66 (15%)	377	0.80416	1	0.85466	1	6.595e-06	0.00255	0.1907	1	0.75372	1
Amp Peak 29(12q13.2)	74 (17%)	369	0.90772	1	0.070657	1	7.5349e-06	0.00291	0.051523	1	0.88167	1
Amp Peak 30(13q34)	40 (9%)	403	0.66458	1	7.0022e-07	0.000278	9.9108e-11	4.27e-08	1	1	0.17551	1
Amp Peak 31(14q24.3)	48 (11%)	395	0.50448	1	1.7757e-05	0.00675	2.5018e-11	1.09e-08	0.18178	1	0.010824	1
Amp Peak 32(14q32.33)	57 (13%)	386	0.18202	1	0.00021072	0.0731	6.7588e-09	2.84e-06	0.12378	1	0.018592	1
Amp Peak 33(16p11.2)	46 (10%)	397	0.081422	1	0.00013685	0.0486	5.299e-14	2.37e-11	1	1	0.00016219	0.0569
Amp Peak 34(17q11.2)	52 (12%)	391	0.046092	1	0.00022116	0.0763	6.602e-17	3.06e-14	0.74756	1	0.024596	1
Amp Peak 35(17q12)	53 (12%)	390	0.06493	1	5.9946e-05	0.0221	7.2922e-18	3.43e-15	0.75039	1	0.0056253	1
Amp Peak 36(17q25.1)	74 (17%)	369	0.044311	1	5.7275e-05	0.0211	8.6286e-16	3.95e-13	1	1	0.0067402	1
Amp Peak 37(18p11.31)	66 (15%)	377	0.48751	1	0.000145	0.0512	1.6652e-18	7.86e-16	0.057806	1	0.87662	1
Amp Peak 38(18q11.2)	49 (11%)	394	0.11876	1	0.012992	1	6.5543e-13	2.9e-10	0.62372	1	1	1
Amp Peak 39(19p13.2)	69 (16%)	374	0.66519	1	3.8097e-11	1.65e-08	6.7191e-18	3.16e-15	0.19996	1	0.64447	1
Amp Peak 40(19p13.11)	68 (15%)	375	0.60734	1	1.1472e-10	4.93e-08	3.1441e-20	1.5e-17	0.083675	1	0.53925	1
Amp Peak 41(19q12)	80 (18%)	363	0.0019336	0.615	2.8046e-10	1.2e-07	8.4347e-37	4.12e-34	0.68628	1	0.00040487	0.137
Amp Peak 42(20p13)	86 (19%)	357	0.1746	1	9.498e-05	0.0343	2.524e-12	1.11e-09	0.23893	1	0.0044323	1
Amp Peak 43(20q11.21)	106 (24%)	337	0.03894	1	1.5303e-07	6.24e-05	1.6459e-23	7.95e-21	0.068165	1	0.012647	1
Amp Peak 44(20q13.12)	111 (25%)	332	0.30368	1	4.4071e-08	1.81e-05	1.8012e-19	8.54e-17	0.016433	1	0.0095636	1
Amp Peak 45(20q13.33)	109 (25%)	334	0.33276	1	1.7192e-07	6.98e-05	2.4479e-15	1.12e-12	0.0054509	1	0.019884	1
Amp Peak 46(22q12.2)	41 (9%)	402	0.60569	1	0.0037359	1	7.2143e-19	3.41e-16	0.28516	1	0.24615	1
Amp Peak 47(Xp11.23)	71 (16%)	372	0.43215	1	0.31049	1	0.090008	1	0.0473	1	0.22354	1
Amp Peak 48(Xq28)	72 (16%)	371	0.0089847	1	0.10078	1	0.0059079	1	1	1	1	1
Del Peak  1(1p36.21)	53 (12%)	390	0.412	1	6.5702e-05	0.0241	3.1265e-08	1.29e-05	0.52461	1	0.037593	1
Del Peak  2(1p36.11)	58 (13%)	385	0.32115	1	7.2754e-05	0.0266	8.4392e-12	3.7e-09	0.75931	1	0.097182	1
Del Peak  3(1q43)	7 (2%)	436	0.028443	1	0.021671	1	0.75017	1	0.10835	1	1	1
Del Peak  4(2p25.3)	22 (5%)	421	0.027603	1	0.11811	1	0.041951	1	0.098115	1	0.31361	1
Del Peak  5(2q22.1)	34 (8%)	409	1.0997e-08	4.6e-06	0.0077214	1	9.5072e-05	0.0343	0.018054	1	1	1
Del Peak  6(2q37.3)	38 (9%)	405	0.48364	1	0.00070621	0.234	0.037369	1	0.46056	1	0.42805	1
Del Peak  7(3p14.2)	56 (13%)	387	0.79685	1	2.7572e-05	0.0103	2.5762e-14	1.16e-11	0.4375	1	0.12991	1
Del Peak  8(3q13.31)	21 (5%)	422	0.92001	1	0.0032128	1	3.179e-05	0.0119	0.63124	1	0.2967	1
Del Peak  9(4p16.3)	65 (15%)	378	0.13881	1	6.8749e-05	0.0252	6.1666e-13	2.73e-10	0.55821	1	0.026011	1
Del Peak 10(4p15.31)	64 (14%)	379	0.13656	1	9.3036e-05	0.0337	8.5411e-12	3.73e-09	0.14144	1	0.42656	1
Del Peak 11(4q22.1)	76 (17%)	367	0.0076295	1	1.3134e-05	0.00503	5.3364e-24	2.59e-21	0.21659	1	0.0017792	0.568
Del Peak 12(4q34.3)	90 (20%)	353	0.024781	1	2.1273e-05	0.00804	1.4312e-23	6.93e-21	0.51968	1	4.2e-05	0.0156
Del Peak 13(5q11.2)	76 (17%)	367	0.061494	1	7.577e-05	0.0276	5.7522e-23	2.77e-20	0.6812	1	0.053057	1
Del Peak 14(6q26)	34 (8%)	409	0.22368	1	0.0092882	1	8.6336e-09	3.62e-06	0.84577	1	0.40616	1
Del Peak 15(7p22.3)	56 (13%)	387	0.010055	1	2.6213e-05	0.00986	2.1795e-13	9.7e-11	0.64169	1	0.064251	1
Del Peak 16(7q11.22)	31 (7%)	412	0.55002	1	1.9077e-05	0.00723	3.1673e-07	0.000128	0.68777	1	0.049525	1
Del Peak 17(7q31.1)	39 (9%)	404	0.69561	1	3.2439e-06	0.00127	1.0067e-17	4.72e-15	0.71469	1	0.0012774	0.414
Del Peak 18(7q36.3)	49 (11%)	394	0.58165	1	3.5282e-08	1.45e-05	2.7625e-17	1.28e-14	1	1	0.012202	1
Del Peak 19(8p23.2)	79 (18%)	364	0.3117	1	0.0029361	0.922	2.7201e-25	1.33e-22	0.68648	1	0.0019496	0.618
Del Peak 20(9p23)	50 (11%)	393	0.39706	1	0.00037902	0.129	6.7502e-10	2.86e-07	0.41293	1	0.15828	1
Del Peak 21(9q34.11)	101 (23%)	342	0.31876	1	2.5546e-10	1.09e-07	1.1781e-16	5.45e-14	0.32382	1	0.011	1
Del Peak 22(10q23.31)	52 (12%)	391	0.10801	1	0.0141	1	0.00013652	0.0486	0.077533	1	0.3857	1
Del Peak 23(11p15.5)	76 (17%)	367	0.0087147	1	2.8076e-08	1.16e-05	1.0254e-21	4.91e-19	0.13047	1	0.025469	1
Del Peak 24(11q14.1)	50 (11%)	393	0.052023	1	1.0392e-05	0.00399	1.7331e-13	7.73e-11	0.62359	1	0.020355	1
Del Peak 25(11q25)	68 (15%)	375	0.0033843	1	8.4132e-05	0.0305	3.1932e-14	1.44e-11	0.04327	1	0.043126	1
Del Peak 26(12q23.1)	33 (7%)	410	0.048446	1	0.0031906	0.999	5.4546e-11	2.36e-08	0.55561	1	0.017114	1
Del Peak 27(12q24.33)	43 (10%)	400	0.08122	1	0.00011294	0.0405	4.7877e-14	2.15e-11	0.11395	1	0.03711	1
Del Peak 28(13q11)	67 (15%)	376	0.01225	1	0.00094696	0.312	1.1103e-09	4.7e-07	0.25095	1	0.21323	1
Del Peak 29(13q14.2)	71 (16%)	372	0.03401	1	0.00060559	0.202	0.00030605	0.105	0.15794	1	0.76098	1
Del Peak 30(14q13.1)	54 (12%)	389	0.00090874	0.301	0.0013943	0.45	8.1761e-12	3.59e-09	0.52994	1	0.087679	1
Del Peak 31(15q15.1)	102 (23%)	341	0.031755	1	1.5392e-08	6.4e-06	2.672e-20	1.27e-17	0.065359	1	0.011594	1
Del Peak 32(15q23)	82 (19%)	361	0.056198	1	8.7254e-06	0.00336	6.7529e-20	3.21e-17	0.23269	1	0.043131	1
Del Peak 33(16p13.3)	61 (14%)	382	0.032498	1	2.7397e-08	1.13e-05	1.7674e-15	8.08e-13	0.54925	1	0.25857	1
Del Peak 34(16q21)	116 (26%)	327	0.047946	1	1.5149e-08	6.32e-06	4.2726e-21	2.04e-18	0.28931	1	0.0049907	1
Del Peak 35(16q23.1)	126 (28%)	317	0.059099	1	1.0011e-07	4.09e-05	1.1917e-24	5.79e-22	0.42202	1	0.00029953	0.103
Del Peak 36(17p13.3)	84 (19%)	359	0.11515	1	4.0906e-05	0.0152	3.1071e-16	1.43e-13	0.29212	1	0.0025746	0.814
Del Peak 37(17p12)	96 (22%)	347	0.069242	1	3.0885e-07	0.000125	1.1222e-24	5.47e-22	0.53042	1	0.00062183	0.207
Del Peak 38(17p11.2)	87 (20%)	356	0.038788	1	3.6291e-06	0.00141	1.969e-17	9.2e-15	0.43729	1	0.090809	1
Del Peak 39(17q11.2)	77 (17%)	366	0.5811	1	1.6013e-05	0.00612	3.0452e-10	1.3e-07	0.17386	1	0.18438	1
Del Peak 40(17q21.2)	82 (19%)	361	0.12963	1	2.1297e-05	0.00804	5.0831e-14	2.28e-11	0.14404	1	0.11518	1
Del Peak 41(18q23)	73 (16%)	370	0.011765	1	0.0017097	0.547	6.409e-15	2.91e-12	0.0050914	1	0.45179	1
Del Peak 42(19p13.3)	115 (26%)	328	0.013305	1	5.2956e-12	2.33e-09	1.2302e-44	6.03e-42	0.34424	1	0.00031977	0.109
Del Peak 43(19p12)	37 (8%)	406	0.10045	1	0.04837	1	5.1611e-07	0.000205	0.2681	1	0.22464	1
Del Peak 44(19q13.43)	47 (11%)	396	0.001483	0.478	0.0012145	0.396	1.6322e-14	7.38e-12	1	1	0.0064153	1
Del Peak 45(20p12.1)	24 (5%)	419	0.077704	1	0.032019	1	0.050283	1	0.81912	1	0.80955	1
Del Peak 46(22q11.1)	65 (15%)	378	0.40504	1	4.6335e-05	0.0171	0.00019542	0.068	0.028268	1	0.6366	1
Del Peak 47(22q12.1)	70 (16%)	373	0.20609	1	0.0015057	0.483	3.7769e-05	0.0141	0.090439	1	0.12457	1
Del Peak 48(22q13.31)	99 (22%)	344	0.015627	1	1.7823e-08	7.4e-06	1.7467e-16	8.07e-14	0.26434	1	0.031256	1
Del Peak 49(22q13.32)	105 (24%)	338	0.014074	1	4.0986e-07	0.000164	2.4984e-17	1.16e-14	0.068809	1	0.066755	1
Del Peak 50(Xp21.1)	62 (14%)	381	0.0038567	1	0.00013679	0.0486	4.1866e-13	1.86e-10	0.5502	1	0.51934	1