Broad GDAC Analyses Status
analyses__2012_12_21__brca Run for Tumor Type: BRCA

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
BRCA92986687408885298410868408507

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Clusters00010
2TP-Aggregate_Gene_Status00010
3TP-CoMut2.000010
4TP-CopyNumber_Clustering_CNMF00010
5TP-CopyNumber_GeneBySample00010
6TP-CopyNumber_Gistic200010
7TP-CopyNumber_Gistic2_Postprocess_Focal00010
8TP-Correlate_Clinical_vs_CopyNumber_Arm00010
9TP-Correlate_Clinical_vs_CopyNumber_Focal00010
10TP-Correlate_Clinical_vs_Methylation00010
11TP-Correlate_Clinical_vs_miR10000
12TP-Correlate_Clinical_vs_miRseq00010
13TP-Correlate_Clinical_vs_Molecular_Signatures00010
14TP-Correlate_Clinical_vs_mRNA00010
15TP-Correlate_Clinical_vs_mRNAseq00010
16TP-Correlate_Clinical_vs_Mutation00010
17TP-Correlate_Clinical_vs_RPPA00010
18TP-Correlate_CopyNumber_vs_miR10000
19TP-Correlate_CopyNumber_vs_mRNA00010
20TP-Correlate_CopyNumber_vs_mRNAseq00010
21TP-Correlate_Methylation_vs_mRNA00010
22TP-GenerateStickFigures2.000010
23TP-GenerateStickFiguresS2N00010
24TP-Methylation_Clustering_CNMF00010
25TP-Methylation_Preprocess00010
26TP-miRseq_Clustering_CNMF00010
27TP-miRseq_Clustering_Consensus00010
28TP-miRseq_Preprocess00010
29TP-miR_Clustering_CNMF10000
30TP-miR_Clustering_Consensus10000
31TP-miR_FindDirectTargets10000
32TP-miR_Preprocess10000
33TP-mRNAseq_Clustering_CNMF00010
34TP-mRNAseq_Clustering_Consensus00010
35TP-mRNAseq_Preprocess00010
36TP-mRNA_Clustering_CNMF00010
37TP-mRNA_Clustering_Consensus00010
38TP-mRNA_Preprocess_Median00010
39TP-Mutation_Assessor00010
40TP-MutSigNozzleReport2.000010
41TP-MutSigNozzleReportS2N00010
42TP-MutSigPreprocess2.000010
43TP-MutSigRun2.000010
44TP-MutSigRunS2N00010
45TP-Paradigm00010
46TP-ParadigmPrepare00010
47TP-ParadigmPrepareWithCopyNumber00010
48TP-ParadigmPrepareWithRNASeq00010
49TP-ParadigmPrepareWithRNASeqAndCopyNumber00010
50TP-ParadigmPreprocess00010
51TP-ParadigmPreprocessExpression00010
52TP-ParadigmPreprocessRNASeq00010
53TP-ParadigmPreprocessWithCopyNumber00010
54TP-ParadigmPreprocessWithRNASeq00010
55TP-ParadigmPreprocessWithRNASeqAndCopyNumber00010
56TP-ParadigmReport00010
57TP-ParadigmReportPreprocess00010
58TP-ParadigmReportPreprocessWithCopyNumber00010
59TP-ParadigmReportPreprocessWithRNASeq00010
60TP-ParadigmReportPreprocessWithRNASeqAndCopyNumber00010
61TP-ParadigmReportWithCopyNumber00010
62TP-ParadigmReportWithRNASeq00010
63TP-ParadigmReportWithRNASeqAndCopyNumber00010
64TP-ParadigmWithCopyNumber00010
65TP-ParadigmWithRNASeq00010
66TP-ParadigmWithRNASeqAndCopyNumber00010
67TP-Pathway_FindEnrichedGenes10000
68TP-ProcessCoverageForMutSig2.000010
69TP-RPPA_Clustering_CNMF00010
70TP-RPPA_Clustering_Consensus00010
Total700630

This table generated on Thu Jan 24 15:51:00 2013