Broad GDAC analyses__2012_12_21_

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
LGG	222	208	180	0	176	27	110	0	180	0	34

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful
1	TP-Aggregate_Clusters	0	1
2	TP-Aggregate_Gene_Status	0	1
3	TP-CoMut2.0	0	1
4	TP-CopyNumber_Clustering_CNMF	0	1
5	TP-CopyNumber_GeneBySample	0	1
6	TP-CopyNumber_Gistic2	0	1
7	TP-CopyNumber_Gistic2_Postprocess_Focal	0	1
8	TP-Correlate_Clinical_vs_CopyNumber_Arm	0	1
9	TP-Correlate_Clinical_vs_CopyNumber_Focal	0	1
10	TP-Correlate_Clinical_vs_Methylation	0	1
11	TP-Correlate_Clinical_vs_miR	1	0
12	TP-Correlate_Clinical_vs_miRseq	0	1
13	TP-Correlate_Clinical_vs_Molecular_Signatures	0	1
14	TP-Correlate_Clinical_vs_mRNA	0	1
15	TP-Correlate_Clinical_vs_mRNAseq	0	1
16	TP-Correlate_Clinical_vs_Mutation	0	1
17	TP-Correlate_Clinical_vs_RPPA	1	0
18	TP-Correlate_CopyNumber_vs_miR	1	0
19	TP-Correlate_CopyNumber_vs_mRNA	0	1
20	TP-Correlate_CopyNumber_vs_mRNAseq	0	1
21	TP-Correlate_Methylation_vs_mRNA	0	1
22	TP-GenerateStickFigures2.0	0	1
23	TP-GenerateStickFiguresS2N	0	1
24	TP-Methylation_Clustering_CNMF	0	1
25	TP-Methylation_Preprocess	0	1
26	TP-miRseq_Clustering_CNMF	0	1
27	TP-miRseq_Clustering_Consensus	0	1
28	TP-miRseq_Preprocess	0	1
29	TP-miR_Clustering_CNMF	1	0
30	TP-miR_Clustering_Consensus	1	0
31	TP-miR_FindDirectTargets	1	0
32	TP-miR_Preprocess	1	0
33	TP-mRNAseq_Clustering_CNMF	0	1
34	TP-mRNAseq_Clustering_Consensus	0	1
35	TP-mRNAseq_Preprocess	0	1
36	TP-mRNA_Clustering_CNMF	0	1
37	TP-mRNA_Clustering_Consensus	0	1
38	TP-mRNA_Preprocess_Median	0	1
39	TP-Mutation_Assessor	0	1
40	TP-MutSigNozzleReport2.0	0	1
41	TP-MutSigNozzleReportS2N	0	1
42	TP-MutSigPreprocess2.0	0	1
43	TP-MutSigRun2.0	0	1
44	TP-MutSigRunS2N	0	1
45	TP-Paradigm	0	1
46	TP-ParadigmPrepare	0	1
47	TP-ParadigmPrepareWithCopyNumber	0	1
48	TP-ParadigmPrepareWithRNASeq	0	1
49	TP-ParadigmPrepareWithRNASeqAndCopyNumber	0	1
50	TP-ParadigmPreprocess	0	1
51	TP-ParadigmPreprocessExpression	0	1
52	TP-ParadigmPreprocessRNASeq	0	1
53	TP-ParadigmPreprocessWithCopyNumber	0	1
54	TP-ParadigmPreprocessWithRNASeq	0	1
55	TP-ParadigmPreprocessWithRNASeqAndCopyNumber	0	1
56	TP-ParadigmReport	0	1
57	TP-ParadigmReportPreprocess	0	1
58	TP-ParadigmReportPreprocessWithCopyNumber	0	1
59	TP-ParadigmReportPreprocessWithRNASeq	0	1
60	TP-ParadigmReportPreprocessWithRNASeqAndCopyNumber	0	1
61	TP-ParadigmReportWithCopyNumber	0	1
62	TP-ParadigmReportWithRNASeq	0	1
63	TP-ParadigmReportWithRNASeqAndCopyNumber	0	1
64	TP-ParadigmWithCopyNumber	0	1
65	TP-ParadigmWithRNASeq	0	1
66	TP-ParadigmWithRNASeqAndCopyNumber	0	1
67	TP-Pathway_FindEnrichedGenes	1	0
68	TP-ProcessCoverageForMutSig2.0	0	1
69	TP-RPPA_Clustering_CNMF	1	0
70	TP-RPPA_Clustering_Consensus	1	0
	Total	10	60

This table generated on Thu Jan 24 15:51:03 2013

Broad GDAC Analyses Status analyses__2012_12_21__lgg Run for Tumor Type: LGG

Broad GDAC Analyses Status
analyses__2012_12_21__lgg Run for Tumor Type: LGG