Broad GDAC Analyses Status
analyses__2012_12_21__pancan12 Run for Tumor Type: PANCAN12

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
PANCAN125320483847064064890218133031061415427852819

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Clusters01000
2TP-Aggregate_Gene_Status01000
3TP-CoMut2.010000
4TP-CopyNumber_Clustering_CNMF00001
5TP-CopyNumber_GeneBySample00001
6TP-CopyNumber_Gistic200010
7TP-CopyNumber_Gistic2_Postprocess_Focal00010
8TP-Correlate_Clinical_vs_CopyNumber_Arm10000
9TP-Correlate_Clinical_vs_CopyNumber_Focal10000
10TP-Correlate_Clinical_vs_Methylation10000
11TP-Correlate_Clinical_vs_miR10000
12TP-Correlate_Clinical_vs_miRseq10000
13TP-Correlate_Clinical_vs_Molecular_Signatures10000
14TP-Correlate_Clinical_vs_mRNA10000
15TP-Correlate_Clinical_vs_mRNAseq10000
16TP-Correlate_Clinical_vs_Mutation10000
17TP-Correlate_Clinical_vs_RPPA10000
18TP-Correlate_CopyNumber_vs_miR10000
19TP-Correlate_CopyNumber_vs_mRNA10000
20TP-Correlate_CopyNumber_vs_mRNAseq10000
21TP-Correlate_Methylation_vs_mRNA10000
22TP-GenerateStickFigures2.010000
23TP-GenerateStickFiguresS2N10000
24TP-Methylation_Clustering_CNMF10000
25TP-Methylation_Preprocess01000
26TP-miRseq_Clustering_CNMF10000
27TP-miRseq_Clustering_Consensus10000
28TP-miRseq_Preprocess10000
29TP-miR_Clustering_CNMF00010
30TP-miR_Clustering_Consensus00010
31TP-miR_FindDirectTargets10000
32TP-miR_Preprocess00010
33TP-mRNAseq_Clustering_CNMF10000
34TP-mRNAseq_Clustering_Consensus10000
35TP-mRNAseq_Preprocess00001
36TP-mRNA_Clustering_CNMF00001
37TP-mRNA_Clustering_Consensus00001
38TP-mRNA_Preprocess_Median00010
39TP-Mutation_Assessor10000
40TP-MutSigNozzleReport2.010000
41TP-MutSigNozzleReportS2N10000
42TP-MutSigPreprocess2.010000
43TP-MutSigRun2.010000
44TP-MutSigRunS2N00001
45TP-Paradigm10000
46TP-ParadigmPrepare10000
47TP-ParadigmPrepareWithCopyNumber10000
48TP-ParadigmPrepareWithRNASeq10000
49TP-ParadigmPrepareWithRNASeqAndCopyNumber10000
50TP-ParadigmPreprocess10000
51TP-ParadigmPreprocessExpression00001
52TP-ParadigmPreprocessRNASeq10000
53TP-ParadigmPreprocessWithCopyNumber10000
54TP-ParadigmPreprocessWithRNASeq10000
55TP-ParadigmPreprocessWithRNASeqAndCopyNumber10000
56TP-ParadigmReport10000
57TP-ParadigmReportPreprocess10000
58TP-ParadigmReportPreprocessWithCopyNumber10000
59TP-ParadigmReportPreprocessWithRNASeq10000
60TP-ParadigmReportPreprocessWithRNASeqAndCopyNumber10000
61TP-ParadigmReportWithCopyNumber10000
62TP-ParadigmReportWithRNASeq10000
63TP-ParadigmReportWithRNASeqAndCopyNumber10000
64TP-ParadigmWithCopyNumber10000
65TP-ParadigmWithRNASeq10000
66TP-ParadigmWithRNASeqAndCopyNumber10000
67TP-Pathway_FindEnrichedGenes10000
68TP-ProcessCoverageForMutSig2.010000
69TP-RPPA_Clustering_CNMF10000
70TP-RPPA_Clustering_Consensus10000
Total543067

This table generated on Thu Jan 24 15:51:04 2013