Broad GDAC analyses__2012_12_21__thca Run Status : THCA

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
THCA	435	218	401	94	412	0	379	0	349	224	323

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	Pipeline	NotRunnable	Successful
1	Aggregate_Clusters	0	1
2	Aggregate_Gene_Status	0	1
3	CoMut2.0	0	1
4	CopyNumber_Clustering_CNMF	0	1
5	CopyNumber_GeneBySample	0	1
6	CopyNumber_Gistic2	0	1
7	CopyNumber_Gistic2_Postprocess_Focal	0	1
8	Correlate_Clinical_vs_CopyNumber_Arm	0	1
9	Correlate_Clinical_vs_CopyNumber_Focal	0	1
10	Correlate_Clinical_vs_Methylation	0	1
11	Correlate_Clinical_vs_miR	1	0
12	Correlate_Clinical_vs_miRseq	0	1
13	Correlate_Clinical_vs_Molecular_Signatures	0	1
14	Correlate_Clinical_vs_mRNA	1	0
15	Correlate_Clinical_vs_mRNAseq	0	1
16	Correlate_Clinical_vs_Mutation	0	1
17	Correlate_Clinical_vs_RPPA	0	1
18	Correlate_CopyNumber_vs_miR	1	0
19	Correlate_CopyNumber_vs_mRNA	1	0
20	Correlate_CopyNumber_vs_mRNAseq	0	1
21	Correlate_Methylation_vs_mRNA	0	1
22	GenerateStickFigures2.0	0	1
23	GenerateStickFiguresS2N	0	1
24	Methylation_Clustering_CNMF	0	1
25	Methylation_Preprocess	0	1
26	miRseq_Clustering_CNMF	0	1
27	miRseq_Clustering_Consensus	0	1
28	miRseq_Preprocess	0	1
29	miR_Clustering_CNMF	1	0
30	miR_Clustering_Consensus	1	0
31	miR_FindDirectTargets	1	0
32	miR_Preprocess	1	0
33	mRNAseq_Clustering_CNMF	0	1
34	mRNAseq_Clustering_Consensus	0	1
35	mRNAseq_Preprocess	0	1
36	mRNA_Clustering_CNMF	1	0
37	mRNA_Clustering_Consensus	1	0
38	mRNA_Preprocess_Median	1	0
39	Mutation_Assessor	0	1
40	MutSigNozzleReport2.0	0	1
41	MutSigNozzleReportS2N	0	1
42	MutSigPreprocess2.0	0	1
43	MutSigRun2.0	0	1
44	MutSigRunS2N	0	1
45	Paradigm	1	0
46	ParadigmPrepare	1	0
47	ParadigmPrepareWithCopyNumber	1	0
48	ParadigmPrepareWithRNASeq	0	1
49	ParadigmPrepareWithRNASeqAndCopyNumber	0	1
50	ParadigmPreprocess	1	0
51	ParadigmPreprocessExpression	1	0
52	ParadigmPreprocessRNASeq	0	1
53	ParadigmPreprocessWithCopyNumber	1	0
54	ParadigmPreprocessWithRNASeq	0	1
55	ParadigmPreprocessWithRNASeqAndCopyNumber	0	1
56	ParadigmReport	1	0
57	ParadigmReportPreprocess	1	0
58	ParadigmReportPreprocessWithCopyNumber	1	0
59	ParadigmReportPreprocessWithRNASeq	0	1
60	ParadigmReportPreprocessWithRNASeqAndCopyNumber	0	1
61	ParadigmReportWithCopyNumber	1	0
62	ParadigmReportWithRNASeq	0	1
63	ParadigmReportWithRNASeqAndCopyNumber	0	1
64	ParadigmWithCopyNumber	1	0
65	ParadigmWithRNASeq	0	1
66	ParadigmWithRNASeqAndCopyNumber	0	1
67	Pathway_FindEnrichedGenes	1	0
68	ProcessCoverageForMutSig2.0	0	1
69	RPPA_Clustering_CNMF	0	1
70	RPPA_Clustering_Consensus	0	1
71	TP-Aggregate_Clusters	0	1
72	TP-Aggregate_Gene_Status	0	1
73	TP-CoMut2.0	0	1
74	TP-CopyNumber_Clustering_CNMF	0	1
75	TP-CopyNumber_GeneBySample	0	1
76	TP-CopyNumber_Gistic2	0	1
77	TP-CopyNumber_Gistic2_Postprocess_Focal	0	1
78	TP-Correlate_Clinical_vs_CopyNumber_Arm	0	1
79	TP-Correlate_Clinical_vs_CopyNumber_Focal	0	1
80	TP-Correlate_Clinical_vs_Methylation	0	1
81	TP-Correlate_Clinical_vs_miR	1	0
82	TP-Correlate_Clinical_vs_miRseq	0	1
83	TP-Correlate_Clinical_vs_Molecular_Signatures	0	1
84	TP-Correlate_Clinical_vs_mRNA	1	0
85	TP-Correlate_Clinical_vs_mRNAseq	0	1
86	TP-Correlate_Clinical_vs_Mutation	0	1
87	TP-Correlate_Clinical_vs_RPPA	0	1
88	TP-Correlate_CopyNumber_vs_miR	1	0
89	TP-Correlate_CopyNumber_vs_mRNA	1	0
90	TP-Correlate_CopyNumber_vs_mRNAseq	0	1
91	TP-Correlate_Methylation_vs_mRNA	0	1
92	TP-GenerateStickFigures2.0	0	1
93	TP-GenerateStickFiguresS2N	0	1
94	TP-Methylation_Clustering_CNMF	0	1
95	TP-Methylation_Preprocess	0	1
96	TP-miRseq_Clustering_CNMF	0	1
97	TP-miRseq_Clustering_Consensus	0	1
98	TP-miRseq_Preprocess	0	1
99	TP-miR_Clustering_CNMF	1	0
100	TP-miR_Clustering_Consensus	1	0
101	TP-miR_FindDirectTargets	1	0
102	TP-miR_Preprocess	1	0
103	TP-mRNAseq_Clustering_CNMF	0	1
104	TP-mRNAseq_Clustering_Consensus	0	1
105	TP-mRNAseq_Preprocess	0	1
106	TP-mRNA_Clustering_CNMF	1	0
107	TP-mRNA_Clustering_Consensus	1	0
108	TP-mRNA_Preprocess_Median	1	0
109	TP-Mutation_Assessor	0	1
110	TP-MutSigNozzleReport2.0	0	1
111	TP-MutSigNozzleReportS2N	0	1
112	TP-MutSigPreprocess2.0	0	1
113	TP-MutSigRun2.0	0	1
114	TP-MutSigRunS2N	0	1
115	TP-Paradigm	1	0
116	TP-ParadigmPrepare	1	0
117	TP-ParadigmPrepareWithCopyNumber	1	0
118	TP-ParadigmPrepareWithRNASeq	0	1
119	TP-ParadigmPrepareWithRNASeqAndCopyNumber	0	1
120	TP-ParadigmPreprocess	1	0
121	TP-ParadigmPreprocessExpression	1	0
122	TP-ParadigmPreprocessRNASeq	0	1
123	TP-ParadigmPreprocessWithCopyNumber	1	0
124	TP-ParadigmPreprocessWithRNASeq	0	1
125	TP-ParadigmPreprocessWithRNASeqAndCopyNumber	0	1
126	TP-ParadigmReport	1	0
127	TP-ParadigmReportPreprocess	1	0
128	TP-ParadigmReportPreprocessWithCopyNumber	1	0
129	TP-ParadigmReportPreprocessWithRNASeq	0	1
130	TP-ParadigmReportPreprocessWithRNASeqAndCopyNumber	0	1
131	TP-ParadigmReportWithCopyNumber	1	0
132	TP-ParadigmReportWithRNASeq	0	1
133	TP-ParadigmReportWithRNASeqAndCopyNumber	0	1
134	TP-ParadigmWithCopyNumber	1	0
135	TP-ParadigmWithRNASeq	0	1
136	TP-ParadigmWithRNASeqAndCopyNumber	0	1
137	TP-Pathway_FindEnrichedGenes	1	0
138	TP-ProcessCoverageForMutSig2.0	0	1
139	TP-RPPA_Clustering_CNMF	0	1
140	TP-RPPA_Clustering_Consensus	0	1
	Total	46	94

This table generated on Thu Jan 24 15:51:06 2013

Broad GDAC Analyses Status analyses__2012_12_21__thca Run for Tumor Type: THCA

Broad GDAC Analyses Status
analyses__2012_12_21__thca Run for Tumor Type: THCA