
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285374/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/KIRP-TP/2172511/1.GDAC_clinicalDataPicker.Finished/KIRP-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=KIRP-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KIRP-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=103, in cluster file=103, common to both=101
[1] "Reduce the number of clustering variables from 18 to 17."
[1]  17 101
[1] "Amp Peak 1(19p13.2) mutation analysis"
[1] 3
  AMP PEAK 1(19P13.2) MUTATED AMP PEAK 1(19P13.2) WILD-TYPE 
                           13                            88 
  AMP PEAK 1(19P13.2) MUTATED AMP PEAK 1(19P13.2) WILD-TYPE 
                           13                            88 
[1] "Del Peak  1(1p36.31) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            21                             80 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            21                             80 
[1] "Del Peak  2(2p11.2) mutation analysis"
[1] 3
  DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE 
                            3                            98 
  DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE 
                            3                            98 
[1] "Del Peak  3(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                            5                            96 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                            5                            96 
[1] "Del Peak  4(3p22.1) mutation analysis"
[1] 3
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                            6                            95 
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                            6                            95 
[1] "Del Peak  5(4q32.1) mutation analysis"
[1] 3
  DEL PEAK  5(4Q32.1) MUTATED DEL PEAK  5(4Q32.1) WILD-TYPE 
                           12                            89 
  DEL PEAK  5(4Q32.1) MUTATED DEL PEAK  5(4Q32.1) WILD-TYPE 
                           12                            89 
[1] "Del Peak  6(5p15.33) mutation analysis"
[1] 3
  DEL PEAK  6(5P15.33) MUTATED DEL PEAK  6(5P15.33) WILD-TYPE 
                             7                             94 
  DEL PEAK  6(5P15.33) MUTATED DEL PEAK  6(5P15.33) WILD-TYPE 
                             7                             94 
[1] "Del Peak  7(5q15) mutation analysis"
[1] 3
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                          8                          93 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                          8                          93 
[1] "Del Peak  8(5q35.2) mutation analysis"
[1] 3
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                            8                            93 
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                            8                            93 
[1] "Del Peak  9(6q22.31) mutation analysis"
[1] 3
  DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE 
                            12                             89 
  DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE 
                            12                             89 
[1] "Del Peak 10(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                           16                            85 
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                           16                            85 
[1] "Del Peak 12(14q11.2) mutation analysis"
[1] 3
  DEL PEAK 12(14Q11.2) MUTATED DEL PEAK 12(14Q11.2) WILD-TYPE 
                            22                             79 
  DEL PEAK 12(14Q11.2) MUTATED DEL PEAK 12(14Q11.2) WILD-TYPE 
                            22                             79 
[1] "Del Peak 13(14q23.3) mutation analysis"
[1] 3
  DEL PEAK 13(14Q23.3) MUTATED DEL PEAK 13(14Q23.3) WILD-TYPE 
                            21                             80 
  DEL PEAK 13(14Q23.3) MUTATED DEL PEAK 13(14Q23.3) WILD-TYPE 
                            21                             80 
[1] "Del Peak 14(14q32.2) mutation analysis"
[1] 3
  DEL PEAK 14(14Q32.2) MUTATED DEL PEAK 14(14Q32.2) WILD-TYPE 
                            21                             80 
  DEL PEAK 14(14Q32.2) MUTATED DEL PEAK 14(14Q32.2) WILD-TYPE 
                            21                             80 
[1] "Del Peak 15(19q13.42) mutation analysis"
[1] 3
  DEL PEAK 15(19Q13.42) MUTATED DEL PEAK 15(19Q13.42) WILD-TYPE 
                              7                              94 
  DEL PEAK 15(19Q13.42) MUTATED DEL PEAK 15(19Q13.42) WILD-TYPE 
                              7                              94 
[1] "Del Peak 16(Xq21.31) mutation analysis"
[1] 3
  DEL PEAK 16(XQ21.31) MUTATED DEL PEAK 16(XQ21.31) WILD-TYPE 
                            15                             86 
  DEL PEAK 16(XQ21.31) MUTATED DEL PEAK 16(XQ21.31) WILD-TYPE 
                            15                             86 
[1] "Del Peak 17(Xq28) mutation analysis"
[1] 3
  DEL PEAK 17(XQ28) MUTATED DEL PEAK 17(XQ28) WILD-TYPE 
                         14                          87 
  DEL PEAK 17(XQ28) MUTATED DEL PEAK 17(XQ28) WILD-TYPE 
                         14                          87 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "STOPPEDSMOKINGYEAR"                    
[19] "TOBACCOSMOKINGHISTORYINDICATOR"        
[20] "YEAROFTOBACCOSMOKINGONSET"             
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 101 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-A4-7286 TCGA-A4-7287 TCGA-A4-7288 TCGA-A4-7583 TCGA-A4-7584 TCGA-A4-7585 
           1           21          485            3           NA           NA 
TCGA-A4-7732 TCGA-A4-7734 TCGA-A4-7828 TCGA-A4-7915 TCGA-A4-7996 TCGA-AL-3466 
           1           27           NA            7           49          293 
TCGA-AL-3467 TCGA-AL-3468 TCGA-AL-3471 TCGA-AL-3472 TCGA-AL-3473 TCGA-AL-7173 
        1778         1636          412          922          763         1357 
TCGA-B1-5398 TCGA-B1-7332 TCGA-B3-3925 TCGA-B3-3926 TCGA-B3-4103 TCGA-B3-4104 
         336          223          109          125          179          135 
TCGA-B9-4113 TCGA-B9-4114 TCGA-B9-4115 TCGA-B9-4116 TCGA-B9-4117 TCGA-B9-4617 
        1536           21          329           92           14           33 
TCGA-B9-5155 TCGA-B9-5156 TCGA-B9-7268 TCGA-BQ-5875 TCGA-BQ-5876 TCGA-BQ-5877 
          19          196           36         2638          585          269 
TCGA-BQ-5878 TCGA-BQ-5879 TCGA-BQ-5880 TCGA-BQ-5881 TCGA-BQ-5882 TCGA-BQ-5883 
        1938          697         1313         1454          658         1242 
TCGA-BQ-5884 TCGA-BQ-5885 TCGA-BQ-5886 TCGA-BQ-5887 TCGA-BQ-5888 TCGA-BQ-5889 
         792          921          792          771          403          329 
TCGA-BQ-5890 TCGA-BQ-5891 TCGA-BQ-5892 TCGA-BQ-5893 TCGA-BQ-5894 TCGA-BQ-7044 
         232           29          364          240           84         3759 
TCGA-BQ-7045 TCGA-BQ-7046 TCGA-BQ-7048 TCGA-BQ-7049 TCGA-BQ-7050 TCGA-BQ-7051 
          NA         2948         2839           NA         1864         1532 
TCGA-BQ-7053 TCGA-BQ-7055 TCGA-BQ-7056 TCGA-BQ-7058 TCGA-BQ-7059 TCGA-BQ-7060 
        1516          799          612           NA          232          213 
TCGA-BQ-7061 TCGA-BQ-7062 TCGA-DW-5560 TCGA-DW-5561 TCGA-DW-7834 TCGA-DW-7836 
         217          115          353          414         3950         1093 
TCGA-DW-7837 TCGA-DW-7838 TCGA-DW-7839 TCGA-DW-7840 TCGA-DW-7841 TCGA-DW-7842 
        1142          744          418          114          445           92 
TCGA-DZ-6131 TCGA-DZ-6132 TCGA-DZ-6133 TCGA-DZ-6134 TCGA-DZ-6135 TCGA-EV-5901 
        2428         2459         1556         1856         1669          471 
TCGA-EV-5902 TCGA-EV-5903 TCGA-G7-6789 TCGA-G7-6790 TCGA-G7-6792 TCGA-G7-6793 
         178          160          208          977         1257           NA 
TCGA-G7-6795 TCGA-G7-6796 TCGA-G7-6797 TCGA-G7-7502 TCGA-GL-6846 TCGA-GL-7773 
         928         1059          387          428         5558           NA 
TCGA-GL-7966 TCGA-HE-7128 TCGA-HE-7129 TCGA-HE-7130 TCGA-J7-6720 
         112           NA           NA           NA           NA 
Variable 1:'AGE':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=84,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'STOPPEDSMOKINGYEAR':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 19:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 20:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "GENDER"                     
[3] "KARNOFSKY.PERFORMANCE.SCORE" "PATHOLOGY.T"                
[5] "PATHOLOGY.N"                 "PATHOLOGICSPREAD(M)"        
[7] "TUMOR.STAGE"                
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
51  7 23  9 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 101 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=39, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=4, binary=FALSE, numeric=TRUE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
56 13 31  1 
[1] "table(vv)"
vv
   T1    T2 T3+T4 
   56    13    32 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
T1 T2 T3 T4 
56 13 31  1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   T1    T2 T3+T4 
   56    13    32 
PATHOLOGY.N, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 
20 11  4 
[1] "table(vv)"
vv
N0 N1 N2 
20 11  4 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 
20 11  4 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


N0 N1 N2 
20 11  4 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 51   7  23   9 
[1] "table(vv)"
vv
  I  II III  IV 
 51   7  23   9 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 51   7  23   9 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 51   7  23   9 

Clustering(1) Variable = Amp Peak 1(19p13.2) mutation analysis
D1V1, survival
                   TCGA-A4-7286                    TCGA-A4-7287 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 1(19P13.2) MUTATED" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "AMP PEAK 1(19P13.2) MUTATED" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 1(19P13.2) MUTATED" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 1(19P13.2) MUTATED" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "AMP PEAK 1(19P13.2) MUTATED" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 1(19P13.2) MUTATED" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "AMP PEAK 1(19P13.2) MUTATED" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "AMP PEAK 1(19P13.2) MUTATED" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
  "AMP PEAK 1(19P13.2) MUTATED" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"AMP PEAK 1(19P13.2) WILD-TYPE" "AMP PEAK 1(19P13.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"AMP PEAK 1(19P13.2) WILD-TYPE"   "AMP PEAK 1(19P13.2) MUTATED" 
[1] "hr=" "1"  
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 1(19P13.2) MUTATED      9    4
  AMP PEAK 1(19P13.2) WILD-TYPE   60   28
        clus
vv       AMP PEAK 1(19P13.2) MUTATED AMP PEAK 1(19P13.2) WILD-TYPE
  FEMALE                           4                            28
  MALE                             9                            60
D1V4, continuous
D1V5, multiclass
       clus
vv      AMP PEAK 1(19P13.2) MUTATED AMP PEAK 1(19P13.2) WILD-TYPE
  T1                              7                            49
  T2                              4                             9
  T3+T4                           2                            30
D1V6, multiclass
    clus
vv   AMP PEAK 1(19P13.2) MUTATED AMP PEAK 1(19P13.2) WILD-TYPE
  N0                           3                            17
  N1                           1                            10
  N2                           0                             4
D1V7, multiclass
    clus
vv   AMP PEAK 1(19P13.2) MUTATED AMP PEAK 1(19P13.2) WILD-TYPE
  M0                           6                            48
  M1                           0                             5
  MX                           4                            29
D1V8, multiclass
     clus
vv    AMP PEAK 1(19P13.2) MUTATED AMP PEAK 1(19P13.2) WILD-TYPE
  I                             7                            44
  II                            0                             7
  III                           2                            21
  IV                            0                             9

Clustering(2) Variable = Del Peak  1(1p36.31) mutation analysis
D2V1, survival
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7502 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7502 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  1(1P36.31) MUTATED" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  1(1P36.31) WILD-TYPE" "DEL PEAK  1(1P36.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7502 
  "DEL PEAK  1(1P36.31) MUTATED"   "DEL PEAK  1(1P36.31) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK  1(1P36.31) WILD-TYPE"   "DEL PEAK  1(1P36.31) MUTATED" 
[1] "hr=" "2"  
D2V2, continuous
D2V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.31) MUTATED     13    8
  DEL PEAK  1(1P36.31) WILD-TYPE   56   24
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  FEMALE                            8                             24
  MALE                             13                             56
D2V4, continuous
D2V5, multiclass
       clus
vv      DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  T1                               8                             48
  T2                               2                             11
  T3+T4                           11                             21
D2V6, multiclass
    clus
vv   DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  N0                            5                             15
  N1                            5                              6
  N2                            0                              4
D2V7, multiclass
    clus
vv   DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  M0                           12                             42
  M1                            3                              2
  MX                            4                             29
D2V8, multiclass
     clus
vv    DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  I                              6                             45
  II                             1                              6
  III                            8                             15
  IV                             3                              6

Clustering(3) Variable = Del Peak  2(2p11.2) mutation analysis
D3V1, survival
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  2(2P11.2) WILD-TYPE"   "DEL PEAK  2(2P11.2) MUTATED" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  2(2P11.2) WILD-TYPE"   "DEL PEAK  2(2P11.2) MUTATED" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
  "DEL PEAK  2(2P11.2) MUTATED" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  2(2P11.2) WILD-TYPE"   "DEL PEAK  2(2P11.2) MUTATED" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  2(2P11.2) WILD-TYPE"   "DEL PEAK  2(2P11.2) MUTATED" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
  "DEL PEAK  2(2P11.2) MUTATED" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  2(2P11.2) WILD-TYPE"   "DEL PEAK  2(2P11.2) MUTATED" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  2(2P11.2) WILD-TYPE"   "DEL PEAK  2(2P11.2) MUTATED" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
  "DEL PEAK  2(2P11.2) MUTATED" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
[1] "hr="     "7.2e+07"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2P11.2) MUTATED      2    1
  DEL PEAK  2(2P11.2) WILD-TYPE   67   31
        clus
vv       DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE
  FEMALE                           1                            31
  MALE                             2                            67
D3V4, continuous
D3V5, multiclass
       clus
vv      DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE
  T1                              1                            55
  T2                              0                            13
  T3+T4                           2                            30
D3V6, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  2(2P11.2) MUTATED"
clus
  DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE 
                            1                            34 
                   TCGA-A4-7583                    TCGA-A4-7585 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-A4-7915                    TCGA-AL-3466 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B9-7268 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5877                    TCGA-BQ-5878 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5887 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7045 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7050 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7051                    TCGA-BQ-7056 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-BQ-7058                    TCGA-DZ-6131 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6793 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-GL-6846 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
                   TCGA-GL-7966                    TCGA-J7-6720 
"DEL PEAK  2(2P11.2) WILD-TYPE" "DEL PEAK  2(2P11.2) WILD-TYPE" 
D3V7, multiclass
    clus
vv   DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE
  M0                           2                            52
  M1                           0                             5
  MX                           1                            32
D3V8, multiclass
     clus
vv    DEL PEAK  2(2P11.2) MUTATED DEL PEAK  2(2P11.2) WILD-TYPE
  I                             1                            50
  II                            0                             7
  III                           2                            21
  IV                            0                             9

Clustering(4) Variable = Del Peak  3(2q37.3) mutation analysis
D4V1, survival
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
  "DEL PEAK  3(2Q37.3) MUTATED" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
[1] "hr=" "1.6"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED      2    3
  DEL PEAK  3(2Q37.3) WILD-TYPE   67   29
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  FEMALE                           3                            29
  MALE                             2                            67
D4V4, continuous
D4V5, multiclass
       clus
vv      DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  T1                              0                            56
  T2                              2                            11
  T3+T4                           3                            29
D4V6, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  3(2Q37.3) MUTATED"
clus
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                            2                            33 
                   TCGA-A4-7583                    TCGA-A4-7915 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-3466                    TCGA-AL-3473 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-AL-7173                    TCGA-B1-5398 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5877 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5879                    TCGA-BQ-5880 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5885 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5887                    TCGA-BQ-5888 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5889                    TCGA-BQ-5890 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5891                    TCGA-BQ-5892 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-5893                    TCGA-BQ-5894 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7048 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-G7-6789 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G7-6793                    TCGA-G7-6795 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-J7-6720 
"DEL PEAK  3(2Q37.3) WILD-TYPE" 
D4V7, multiclass
    clus
vv   DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  M0                           4                            50
  M1                           0                             5
  MX                           0                            33
D4V8, multiclass
     clus
vv    DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  I                             0                            51
  II                            1                             6
  III                           3                            20
  IV                            0                             9

Clustering(5) Variable = Del Peak  4(3p22.1) mutation analysis
D5V1, survival
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
[1] "hr=" "2.5"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P22.1) MUTATED      5    1
  DEL PEAK  4(3P22.1) WILD-TYPE   64   31
        clus
vv       DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  FEMALE                           1                            31
  MALE                             5                            64
D5V4, continuous
D5V5, multiclass
       clus
vv      DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  T1                              1                            55
  T2                              1                            12
  T3+T4                           4                            28
D5V6, multiclass
    clus
vv   DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  N0                           3                            17
  N1                           3                             8
  N2                           0                             4
D5V7, multiclass
    clus
vv   DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  M0                           3                            51
  M1                           1                             4
  MX                           2                            31
D5V8, multiclass
     clus
vv    DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  I                             1                            50
  II                            1                             6
  III                           3                            20
  IV                            1                             8

Clustering(6) Variable = Del Peak  5(4q32.1) mutation analysis
D6V1, survival
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  5(4Q32.1) MUTATED" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  5(4Q32.1) WILD-TYPE"   "DEL PEAK  5(4Q32.1) MUTATED" 
[1] "hr=" "3.1"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4Q32.1) MUTATED      7    5
  DEL PEAK  5(4Q32.1) WILD-TYPE   62   27
        clus
vv       DEL PEAK  5(4Q32.1) MUTATED DEL PEAK  5(4Q32.1) WILD-TYPE
  FEMALE                           5                            27
  MALE                             7                            62
D6V4, continuous
[1] "Remove cluster labels:"      "DEL PEAK  5(4Q32.1) MUTATED"
clus
  DEL PEAK  5(4Q32.1) MUTATED DEL PEAK  5(4Q32.1) WILD-TYPE 
                            1                            20 
                   TCGA-A4-7286                    TCGA-A4-7828 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-EV-5901                    TCGA-EV-5902 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-EV-5903                    TCGA-G7-6790 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6793                    TCGA-G7-6796 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  5(4Q32.1) WILD-TYPE" "DEL PEAK  5(4Q32.1) WILD-TYPE" 
D6V5, multiclass
       clus
vv      DEL PEAK  5(4Q32.1) MUTATED DEL PEAK  5(4Q32.1) WILD-TYPE
  T1                              4                            52
  T2                              2                            11
  T3+T4                           6                            26
D6V6, multiclass
    clus
vv   DEL PEAK  5(4Q32.1) MUTATED DEL PEAK  5(4Q32.1) WILD-TYPE
  N0                           2                            18
  N1                           3                             8
  N2                           0                             4
D6V7, multiclass
    clus
vv   DEL PEAK  5(4Q32.1) MUTATED DEL PEAK  5(4Q32.1) WILD-TYPE
  M0                           5                            49
  M1                           2                             3
  MX                           4                            29
D6V8, multiclass
     clus
vv    DEL PEAK  5(4Q32.1) MUTATED DEL PEAK  5(4Q32.1) WILD-TYPE
  I                             4                            47
  II                            2                             5
  III                           4                            19
  IV                            2                             7

Clustering(7) Variable = Del Peak  6(5p15.33) mutation analysis
D7V1, survival
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  6(5P15.33) MUTATED" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
  "DEL PEAK  6(5P15.33) MUTATED"   "DEL PEAK  6(5P15.33) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK  6(5P15.33) MUTATED" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  6(5P15.33) WILD-TYPE"   "DEL PEAK  6(5P15.33) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  6(5P15.33) MUTATED" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
  "DEL PEAK  6(5P15.33) MUTATED"   "DEL PEAK  6(5P15.33) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK  6(5P15.33) MUTATED" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  6(5P15.33) WILD-TYPE"   "DEL PEAK  6(5P15.33) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  6(5P15.33) MUTATED" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
  "DEL PEAK  6(5P15.33) MUTATED"   "DEL PEAK  6(5P15.33) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK  6(5P15.33) MUTATED" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  6(5P15.33) WILD-TYPE"   "DEL PEAK  6(5P15.33) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
[1] "hr=" "3.2"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(5P15.33) MUTATED      4    3
  DEL PEAK  6(5P15.33) WILD-TYPE   65   29
        clus
vv       DEL PEAK  6(5P15.33) MUTATED DEL PEAK  6(5P15.33) WILD-TYPE
  FEMALE                            3                             29
  MALE                              4                             65
D7V4, continuous
[1] "Remove cluster labels:"       "DEL PEAK  6(5P15.33) MUTATED"
clus
  DEL PEAK  6(5P15.33) MUTATED DEL PEAK  6(5P15.33) WILD-TYPE 
                             2                             19 
                    TCGA-A4-7828                     TCGA-AL-3466 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EV-5901                     TCGA-EV-5902 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EV-5903                     TCGA-G7-6790 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-G7-6796                     TCGA-G7-6797 
"DEL PEAK  6(5P15.33) WILD-TYPE" "DEL PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-G7-7502 
"DEL PEAK  6(5P15.33) WILD-TYPE" 
D7V5, multiclass
       clus
vv      DEL PEAK  6(5P15.33) MUTATED DEL PEAK  6(5P15.33) WILD-TYPE
  T1                               1                             55
  T2                               1                             12
  T3+T4                            5                             27
D7V6, multiclass
    clus
vv   DEL PEAK  6(5P15.33) MUTATED DEL PEAK  6(5P15.33) WILD-TYPE
  N0                            0                             20
  N1                            3                              8
  N2                            1                              3
D7V7, multiclass
    clus
vv   DEL PEAK  6(5P15.33) MUTATED DEL PEAK  6(5P15.33) WILD-TYPE
  M0                            3                             51
  M1                            1                              4
  MX                            2                             31
D7V8, multiclass
     clus
vv    DEL PEAK  6(5P15.33) MUTATED DEL PEAK  6(5P15.33) WILD-TYPE
  I                              2                             49
  II                             0                              7
  III                            2                             21
  IV                             2                              7

Clustering(8) Variable = Del Peak  7(5q15) mutation analysis
D8V1, survival
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-AL-3466 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7502 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-GL-6846                  TCGA-GL-7966 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-AL-3466 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7502 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-GL-6846                  TCGA-GL-7966 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-AL-3466 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7502 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-GL-6846                  TCGA-GL-7966 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
[1] "hr=" "1.7"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(5Q15) MUTATED      4    4
  DEL PEAK  7(5Q15) WILD-TYPE   65   28
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  FEMALE                         4                          28
  MALE                           4                          65
D8V4, continuous
[1] "Remove cluster labels:"    "DEL PEAK  7(5Q15) MUTATED"
clus
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                          1                          20 
                 TCGA-A4-7828                  TCGA-AL-3466 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EV-5901                  TCGA-EV-5902 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EV-5903                  TCGA-G7-6790 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6793                  TCGA-G7-6796 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7502 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
D8V5, multiclass
       clus
vv      DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  T1                            2                          54
  T2                            0                          13
  T3+T4                         6                          26
D8V6, multiclass
    clus
vv   DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  N0                         1                          19
  N1                         3                           8
  N2                         0                           4
D8V7, multiclass
    clus
vv   DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  M0                         2                          52
  M1                         1                           4
  MX                         4                          29
D8V8, multiclass
     clus
vv    DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  I                           2                          49
  II                          0                           7
  III                         4                          19
  IV                          1                           8

Clustering(9) Variable = Del Peak  8(5q35.2) mutation analysis
D9V1, survival
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  8(5Q35.2) MUTATED"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  8(5Q35.2) MUTATED"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK  8(5Q35.2) MUTATED"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK  8(5Q35.2) MUTATED" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK  8(5Q35.2) WILD-TYPE"   "DEL PEAK  8(5Q35.2) MUTATED" 
[1] "hr=" "1.7"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q35.2) MUTATED      4    4
  DEL PEAK  8(5Q35.2) WILD-TYPE   65   28
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  FEMALE                           4                            28
  MALE                             4                            65
D9V4, continuous
[1] "Remove cluster labels:"      "DEL PEAK  8(5Q35.2) MUTATED"
clus
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                            1                            20 
                   TCGA-A4-7828                    TCGA-AL-3466 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5901                    TCGA-EV-5902 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-EV-5903                    TCGA-G7-6790 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6793                    TCGA-G7-6796 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK  8(5Q35.2) WILD-TYPE" "DEL PEAK  8(5Q35.2) WILD-TYPE" 
D9V5, multiclass
       clus
vv      DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  T1                              1                            55
  T2                              1                            12
  T3+T4                           6                            26
D9V6, multiclass
    clus
vv   DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  N0                           1                            19
  N1                           3                             8
  N2                           0                             4
D9V7, multiclass
    clus
vv   DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  M0                           3                            51
  M1                           1                             4
  MX                           3                            30
D9V8, multiclass
     clus
vv    DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  I                             1                            50
  II                            1                             6
  III                           4                            19
  IV                            1                             8

Clustering(10) Variable = Del Peak  9(6q22.31) mutation analysis
D10V1, survival
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK  9(6Q22.31) MUTATED"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK  9(6Q22.31) MUTATED"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK  9(6Q22.31) MUTATED"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
  "DEL PEAK  9(6Q22.31) MUTATED" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK  9(6Q22.31) WILD-TYPE" "DEL PEAK  9(6Q22.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK  9(6Q22.31) WILD-TYPE"   "DEL PEAK  9(6Q22.31) MUTATED" 
[1] "hr=" "3.5"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(6Q22.31) MUTATED      5    7
  DEL PEAK  9(6Q22.31) WILD-TYPE   64   25
        clus
vv       DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE
  FEMALE                            7                             25
  MALE                              5                             64
D10V4, continuous
D10V5, multiclass
       clus
vv      DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE
  T1                               4                             52
  T2                               0                             13
  T3+T4                            8                             24
D10V6, multiclass
    clus
vv   DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE
  N0                            3                             17
  N1                            2                              9
  N2                            1                              3
D10V7, multiclass
    clus
vv   DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE
  M0                            7                             47
  M1                            1                              4
  MX                            3                             30
D10V8, multiclass
     clus
vv    DEL PEAK  9(6Q22.31) MUTATED DEL PEAK  9(6Q22.31) WILD-TYPE
  I                              4                             47
  II                             0                              7
  III                            5                             18
  IV                             2                              7

Clustering(11) Variable = Del Peak 10(9p21.3) mutation analysis
D11V1, survival
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK 10(9P21.3) MUTATED"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
  "DEL PEAK 10(9P21.3) MUTATED"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK 10(9P21.3) MUTATED"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
  "DEL PEAK 10(9P21.3) MUTATED"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-A4-7286                    TCGA-A4-7287 
  "DEL PEAK 10(9P21.3) MUTATED"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-A4-7288                    TCGA-A4-7583 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7585                    TCGA-A4-7732 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7734                    TCGA-A4-7915 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-A4-7996                    TCGA-AL-3466 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-AL-3467                    TCGA-AL-3468 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-AL-3471                    TCGA-AL-3472 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-AL-3473                    TCGA-AL-7173 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B1-5398                    TCGA-B1-7332 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B3-3925                    TCGA-B3-3926 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-B3-4103                    TCGA-B3-4104 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-4113                    TCGA-B9-4114 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-4115                    TCGA-B9-4116 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-B9-4117                    TCGA-B9-4617 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-5155                    TCGA-B9-5156 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-B9-7268                    TCGA-BQ-5875 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5876                    TCGA-BQ-5877 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5878                    TCGA-BQ-5879 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5880                    TCGA-BQ-5881 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5882                    TCGA-BQ-5883 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5884                    TCGA-BQ-5885 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5886                    TCGA-BQ-5887 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5888                    TCGA-BQ-5889 
  "DEL PEAK 10(9P21.3) MUTATED"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-BQ-5890                    TCGA-BQ-5891 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5892                    TCGA-BQ-5893 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-5894                    TCGA-BQ-7044 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7045                    TCGA-BQ-7046 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7048                    TCGA-BQ-7049 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7050                    TCGA-BQ-7051 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7053                    TCGA-BQ-7055 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7056                    TCGA-BQ-7058 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7059                    TCGA-BQ-7060 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-BQ-7061                    TCGA-BQ-7062 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-5560                    TCGA-DW-5561 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7834                    TCGA-DW-7836 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7837                    TCGA-DW-7838 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7839                    TCGA-DW-7840 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DW-7841                    TCGA-DW-7842 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6131                    TCGA-DZ-6132 
  "DEL PEAK 10(9P21.3) MUTATED" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6133                    TCGA-DZ-6134 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-DZ-6135                    TCGA-EV-5901 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-EV-5902                    TCGA-EV-5903 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-G7-6789                    TCGA-G7-6790 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-G7-6792                    TCGA-G7-6793 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-6795                    TCGA-G7-6796 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
                   TCGA-G7-6797                    TCGA-G7-7502 
"DEL PEAK 10(9P21.3) WILD-TYPE" "DEL PEAK 10(9P21.3) WILD-TYPE" 
                   TCGA-GL-6846                    TCGA-GL-7966 
"DEL PEAK 10(9P21.3) WILD-TYPE"   "DEL PEAK 10(9P21.3) MUTATED" 
[1] "hr=" "4.2"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(9P21.3) MUTATED      7    9
  DEL PEAK 10(9P21.3) WILD-TYPE   62   23
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  FEMALE                           9                            23
  MALE                             7                            62
D11V4, continuous
D11V5, multiclass
       clus
vv      DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  T1                              4                            52
  T2                              1                            12
  T3+T4                          11                            21
D11V6, multiclass
    clus
vv   DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  N0                           4                            16
  N1                           5                             6
  N2                           1                             3
D11V7, multiclass
    clus
vv   DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  M0                           6                            48
  M1                           3                             2
  MX                           5                            28
D11V8, multiclass
     clus
vv    DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  I                             4                            47
  II                            0                             7
  III                           6                            17
  IV                            4                             5

Clustering(12) Variable = Del Peak 12(14q11.2) mutation analysis
D12V1, survival
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 12(14Q11.2) MUTATED"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 12(14Q11.2) MUTATED"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 12(14Q11.2) MUTATED"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 12(14Q11.2) MUTATED"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 12(14Q11.2) MUTATED"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 12(14Q11.2) MUTATED"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 12(14Q11.2) MUTATED"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 12(14Q11.2) MUTATED"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
  "DEL PEAK 12(14Q11.2) MUTATED" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 12(14Q11.2) MUTATED"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK 12(14Q11.2) WILD-TYPE"   "DEL PEAK 12(14Q11.2) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK 12(14Q11.2) WILD-TYPE" "DEL PEAK 12(14Q11.2) WILD-TYPE" 
[1] "hr=" "2"  
D12V2, continuous
D12V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(14Q11.2) MUTATED     14    8
  DEL PEAK 12(14Q11.2) WILD-TYPE   55   24
        clus
vv       DEL PEAK 12(14Q11.2) MUTATED DEL PEAK 12(14Q11.2) WILD-TYPE
  FEMALE                            8                             24
  MALE                             14                             55
D12V4, continuous
D12V5, multiclass
       clus
vv      DEL PEAK 12(14Q11.2) MUTATED DEL PEAK 12(14Q11.2) WILD-TYPE
  T1                               9                             47
  T2                               3                             10
  T3+T4                           10                             22
D12V6, multiclass
    clus
vv   DEL PEAK 12(14Q11.2) MUTATED DEL PEAK 12(14Q11.2) WILD-TYPE
  N0                            5                             15
  N1                            4                              7
  N2                            2                              2
D12V7, multiclass
    clus
vv   DEL PEAK 12(14Q11.2) MUTATED DEL PEAK 12(14Q11.2) WILD-TYPE
  M0                           11                             43
  M1                            3                              2
  MX                            6                             27
D12V8, multiclass
     clus
vv    DEL PEAK 12(14Q11.2) MUTATED DEL PEAK 12(14Q11.2) WILD-TYPE
  I                              9                             42
  II                             2                              5
  III                            4                             19
  IV                             5                              4

Clustering(13) Variable = Del Peak 13(14q23.3) mutation analysis
D13V1, survival
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 13(14Q23.3) MUTATED"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 13(14Q23.3) MUTATED"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 13(14Q23.3) MUTATED" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
  "DEL PEAK 13(14Q23.3) MUTATED" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 13(14Q23.3) MUTATED"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 13(14Q23.3) MUTATED" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 13(14Q23.3) MUTATED"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 13(14Q23.3) MUTATED"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 13(14Q23.3) MUTATED"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 13(14Q23.3) MUTATED" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
  "DEL PEAK 13(14Q23.3) MUTATED" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 13(14Q23.3) MUTATED"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 13(14Q23.3) MUTATED" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 13(14Q23.3) MUTATED"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 13(14Q23.3) MUTATED"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 13(14Q23.3) MUTATED"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 13(14Q23.3) MUTATED" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
  "DEL PEAK 13(14Q23.3) MUTATED" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 13(14Q23.3) MUTATED"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 13(14Q23.3) MUTATED" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 13(14Q23.3) MUTATED"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK 13(14Q23.3) WILD-TYPE"   "DEL PEAK 13(14Q23.3) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK 13(14Q23.3) WILD-TYPE" "DEL PEAK 13(14Q23.3) WILD-TYPE" 
[1] "hr=" "2"  
D13V2, continuous
D13V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(14Q23.3) MUTATED     13    8
  DEL PEAK 13(14Q23.3) WILD-TYPE   56   24
        clus
vv       DEL PEAK 13(14Q23.3) MUTATED DEL PEAK 13(14Q23.3) WILD-TYPE
  FEMALE                            8                             24
  MALE                             13                             56
D13V4, continuous
D13V5, multiclass
       clus
vv      DEL PEAK 13(14Q23.3) MUTATED DEL PEAK 13(14Q23.3) WILD-TYPE
  T1                               8                             48
  T2                               3                             10
  T3+T4                           10                             22
D13V6, multiclass
    clus
vv   DEL PEAK 13(14Q23.3) MUTATED DEL PEAK 13(14Q23.3) WILD-TYPE
  N0                            4                             16
  N1                            5                              6
  N2                            2                              2
D13V7, multiclass
    clus
vv   DEL PEAK 13(14Q23.3) MUTATED DEL PEAK 13(14Q23.3) WILD-TYPE
  M0                            9                             45
  M1                            3                              2
  MX                            7                             26
D13V8, multiclass
     clus
vv    DEL PEAK 13(14Q23.3) MUTATED DEL PEAK 13(14Q23.3) WILD-TYPE
  I                              8                             43
  II                             2                              5
  III                            4                             19
  IV                             5                              4

Clustering(14) Variable = Del Peak 14(14q32.2) mutation analysis
D14V1, survival
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 14(14Q32.2) MUTATED"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 14(14Q32.2) MUTATED"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 14(14Q32.2) MUTATED" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
  "DEL PEAK 14(14Q32.2) MUTATED" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 14(14Q32.2) MUTATED"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 14(14Q32.2) MUTATED" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 14(14Q32.2) MUTATED"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 14(14Q32.2) MUTATED"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 14(14Q32.2) MUTATED"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 14(14Q32.2) MUTATED" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
  "DEL PEAK 14(14Q32.2) MUTATED" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 14(14Q32.2) MUTATED"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 14(14Q32.2) MUTATED" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 14(14Q32.2) MUTATED"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 14(14Q32.2) MUTATED"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
  "DEL PEAK 14(14Q32.2) MUTATED"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 14(14Q32.2) MUTATED" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
  "DEL PEAK 14(14Q32.2) MUTATED" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
  "DEL PEAK 14(14Q32.2) MUTATED"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
  "DEL PEAK 14(14Q32.2) MUTATED" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 14(14Q32.2) MUTATED"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK 14(14Q32.2) WILD-TYPE"   "DEL PEAK 14(14Q32.2) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK 14(14Q32.2) WILD-TYPE" "DEL PEAK 14(14Q32.2) WILD-TYPE" 
[1] "hr=" "2"  
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(14Q32.2) MUTATED     14    7
  DEL PEAK 14(14Q32.2) WILD-TYPE   55   25
        clus
vv       DEL PEAK 14(14Q32.2) MUTATED DEL PEAK 14(14Q32.2) WILD-TYPE
  FEMALE                            7                             25
  MALE                             14                             55
D14V4, continuous
D14V5, multiclass
       clus
vv      DEL PEAK 14(14Q32.2) MUTATED DEL PEAK 14(14Q32.2) WILD-TYPE
  T1                               9                             47
  T2                               3                             10
  T3+T4                            9                             23
D14V6, multiclass
    clus
vv   DEL PEAK 14(14Q32.2) MUTATED DEL PEAK 14(14Q32.2) WILD-TYPE
  N0                            4                             16
  N1                            5                              6
  N2                            2                              2
D14V7, multiclass
    clus
vv   DEL PEAK 14(14Q32.2) MUTATED DEL PEAK 14(14Q32.2) WILD-TYPE
  M0                            8                             46
  M1                            3                              2
  MX                            8                             25
D14V8, multiclass
     clus
vv    DEL PEAK 14(14Q32.2) MUTATED DEL PEAK 14(14Q32.2) WILD-TYPE
  I                              9                             42
  II                             2                              5
  III                            3                             20
  IV                             5                              4

Clustering(15) Variable = Del Peak 15(19q13.42) mutation analysis
D15V1, survival
                     TCGA-A4-7286                      TCGA-A4-7287 
  "DEL PEAK 15(19Q13.42) MUTATED" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7288                      TCGA-A4-7583 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7585                      TCGA-A4-7732 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7734                      TCGA-A4-7915 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7996                      TCGA-AL-3466 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3467                      TCGA-AL-3468 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3471                      TCGA-AL-3472 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3473                      TCGA-AL-7173 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B1-5398                      TCGA-B1-7332 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-B3-3925                      TCGA-B3-3926 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B3-4103                      TCGA-B3-4104 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4113                      TCGA-B9-4114 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4115                      TCGA-B9-4116 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4117                      TCGA-B9-4617 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-5155                      TCGA-B9-5156 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-7268                      TCGA-BQ-5875 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5876                      TCGA-BQ-5877 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5878                      TCGA-BQ-5879 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5880                      TCGA-BQ-5881 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5882                      TCGA-BQ-5883 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5884                      TCGA-BQ-5885 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-BQ-5886                      TCGA-BQ-5887 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5888                      TCGA-BQ-5889 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5890                      TCGA-BQ-5891 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-BQ-5892                      TCGA-BQ-5893 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5894                      TCGA-BQ-7044 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7045                      TCGA-BQ-7046 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7048                      TCGA-BQ-7049 
  "DEL PEAK 15(19Q13.42) MUTATED" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7050                      TCGA-BQ-7051 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7053                      TCGA-BQ-7055 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7056                      TCGA-BQ-7058 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7059                      TCGA-BQ-7060 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-BQ-7061                      TCGA-BQ-7062 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-5560                      TCGA-DW-5561 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7834                      TCGA-DW-7836 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7837                      TCGA-DW-7838 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7839                      TCGA-DW-7840 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7841                      TCGA-DW-7842 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6131                      TCGA-DZ-6132 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6133                      TCGA-DZ-6134 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6135                      TCGA-EV-5901 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5902                      TCGA-EV-5903 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6789                      TCGA-G7-6790 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6792                      TCGA-G7-6793 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6795                      TCGA-G7-6796 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7502 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-GL-6846                      TCGA-GL-7966 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7286                      TCGA-A4-7287 
  "DEL PEAK 15(19Q13.42) MUTATED" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7288                      TCGA-A4-7583 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7585                      TCGA-A4-7732 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7734                      TCGA-A4-7915 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7996                      TCGA-AL-3466 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3467                      TCGA-AL-3468 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3471                      TCGA-AL-3472 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3473                      TCGA-AL-7173 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B1-5398                      TCGA-B1-7332 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-B3-3925                      TCGA-B3-3926 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B3-4103                      TCGA-B3-4104 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4113                      TCGA-B9-4114 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4115                      TCGA-B9-4116 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4117                      TCGA-B9-4617 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-5155                      TCGA-B9-5156 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-7268                      TCGA-BQ-5875 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5876                      TCGA-BQ-5877 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5878                      TCGA-BQ-5879 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5880                      TCGA-BQ-5881 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5882                      TCGA-BQ-5883 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5884                      TCGA-BQ-5885 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-BQ-5886                      TCGA-BQ-5887 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5888                      TCGA-BQ-5889 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5890                      TCGA-BQ-5891 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-BQ-5892                      TCGA-BQ-5893 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5894                      TCGA-BQ-7044 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7045                      TCGA-BQ-7046 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7048                      TCGA-BQ-7049 
  "DEL PEAK 15(19Q13.42) MUTATED" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7050                      TCGA-BQ-7051 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7053                      TCGA-BQ-7055 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7056                      TCGA-BQ-7058 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7059                      TCGA-BQ-7060 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-BQ-7061                      TCGA-BQ-7062 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-5560                      TCGA-DW-5561 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7834                      TCGA-DW-7836 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7837                      TCGA-DW-7838 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7839                      TCGA-DW-7840 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7841                      TCGA-DW-7842 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6131                      TCGA-DZ-6132 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6133                      TCGA-DZ-6134 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6135                      TCGA-EV-5901 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5902                      TCGA-EV-5903 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6789                      TCGA-G7-6790 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6792                      TCGA-G7-6793 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6795                      TCGA-G7-6796 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7502 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-GL-6846                      TCGA-GL-7966 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7286                      TCGA-A4-7287 
  "DEL PEAK 15(19Q13.42) MUTATED" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7288                      TCGA-A4-7583 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7585                      TCGA-A4-7732 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7734                      TCGA-A4-7915 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-A4-7996                      TCGA-AL-3466 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3467                      TCGA-AL-3468 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3471                      TCGA-AL-3472 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-AL-3473                      TCGA-AL-7173 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B1-5398                      TCGA-B1-7332 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-B3-3925                      TCGA-B3-3926 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B3-4103                      TCGA-B3-4104 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4113                      TCGA-B9-4114 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4115                      TCGA-B9-4116 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-4117                      TCGA-B9-4617 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-5155                      TCGA-B9-5156 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-B9-7268                      TCGA-BQ-5875 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5876                      TCGA-BQ-5877 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5878                      TCGA-BQ-5879 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5880                      TCGA-BQ-5881 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5882                      TCGA-BQ-5883 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5884                      TCGA-BQ-5885 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-BQ-5886                      TCGA-BQ-5887 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5888                      TCGA-BQ-5889 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5890                      TCGA-BQ-5891 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-BQ-5892                      TCGA-BQ-5893 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-5894                      TCGA-BQ-7044 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7045                      TCGA-BQ-7046 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7048                      TCGA-BQ-7049 
  "DEL PEAK 15(19Q13.42) MUTATED" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7050                      TCGA-BQ-7051 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7053                      TCGA-BQ-7055 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7056                      TCGA-BQ-7058 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-BQ-7059                      TCGA-BQ-7060 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-BQ-7061                      TCGA-BQ-7062 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-5560                      TCGA-DW-5561 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7834                      TCGA-DW-7836 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7837                      TCGA-DW-7838 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7839                      TCGA-DW-7840 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7841                      TCGA-DW-7842 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6131                      TCGA-DZ-6132 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6133                      TCGA-DZ-6134 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DZ-6135                      TCGA-EV-5901 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5902                      TCGA-EV-5903 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6789                      TCGA-G7-6790 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6792                      TCGA-G7-6793 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6795                      TCGA-G7-6796 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6797                      TCGA-G7-7502 
"DEL PEAK 15(19Q13.42) WILD-TYPE"   "DEL PEAK 15(19Q13.42) MUTATED" 
                     TCGA-GL-6846                      TCGA-GL-7966 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
[1] "hr="     "7.1e+07"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 15(19Q13.42) MUTATED      5    2
  DEL PEAK 15(19Q13.42) WILD-TYPE   64   30
        clus
vv       DEL PEAK 15(19Q13.42) MUTATED DEL PEAK 15(19Q13.42) WILD-TYPE
  FEMALE                             2                              30
  MALE                               5                              64
D15V4, continuous
[1] "Remove cluster labels:"        "DEL PEAK 15(19Q13.42) MUTATED"
clus
  DEL PEAK 15(19Q13.42) MUTATED DEL PEAK 15(19Q13.42) WILD-TYPE 
                              2                              19 
                     TCGA-A4-7828                      TCGA-AL-3466 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-5560                      TCGA-DW-5561 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7834                      TCGA-DW-7836 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7837                      TCGA-DW-7838 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7839                      TCGA-DW-7840 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-DW-7841                      TCGA-DW-7842 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5901                      TCGA-EV-5902 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-EV-5903                      TCGA-G7-6790 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6793                      TCGA-G7-6796 
"DEL PEAK 15(19Q13.42) WILD-TYPE" "DEL PEAK 15(19Q13.42) WILD-TYPE" 
                     TCGA-G7-6797 
"DEL PEAK 15(19Q13.42) WILD-TYPE" 
D15V5, multiclass
       clus
vv      DEL PEAK 15(19Q13.42) MUTATED DEL PEAK 15(19Q13.42) WILD-TYPE
  T1                                2                              54
  T2                                1                              12
  T3+T4                             4                              28
D15V6, multiclass
    clus
vv   DEL PEAK 15(19Q13.42) MUTATED DEL PEAK 15(19Q13.42) WILD-TYPE
  N0                             3                              17
  N1                             0                              11
  N2                             0                               4
D15V7, multiclass
    clus
vv   DEL PEAK 15(19Q13.42) MUTATED DEL PEAK 15(19Q13.42) WILD-TYPE
  M0                             4                              50
  M1                             0                               5
  MX                             2                              31
D15V8, multiclass
     clus
vv    DEL PEAK 15(19Q13.42) MUTATED DEL PEAK 15(19Q13.42) WILD-TYPE
  I                               2                              49
  II                              1                               6
  III                             3                              20
  IV                              0                               9

Clustering(16) Variable = Del Peak 16(Xq21.31) mutation analysis
D16V1, survival
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 16(XQ21.31) MUTATED"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 16(XQ21.31) MUTATED"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK 16(XQ21.31) MUTATED" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 16(XQ21.31) MUTATED" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 16(XQ21.31) MUTATED"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 16(XQ21.31) MUTATED"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK 16(XQ21.31) MUTATED" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 16(XQ21.31) MUTATED" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-A4-7286                     TCGA-A4-7287 
  "DEL PEAK 16(XQ21.31) MUTATED"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-A4-7288                     TCGA-A4-7583 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-A4-7585                     TCGA-A4-7732 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-A4-7734                     TCGA-A4-7915 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-A4-7996                     TCGA-AL-3466 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AL-7173 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B1-5398                     TCGA-B1-7332 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4113                     TCGA-B9-4114 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4115                     TCGA-B9-4116 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-4117                     TCGA-B9-4617 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-5155                     TCGA-B9-5156 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-B9-7268                     TCGA-BQ-5875 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5876                     TCGA-BQ-5877 
  "DEL PEAK 16(XQ21.31) MUTATED"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-BQ-5878                     TCGA-BQ-5879 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-BQ-5880                     TCGA-BQ-5881 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5882                     TCGA-BQ-5883 
  "DEL PEAK 16(XQ21.31) MUTATED" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5884                     TCGA-BQ-5885 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5886                     TCGA-BQ-5887 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5888                     TCGA-BQ-5889 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5890                     TCGA-BQ-5891 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5892                     TCGA-BQ-5893 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-5894                     TCGA-BQ-7044 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7045                     TCGA-BQ-7046 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7048                     TCGA-BQ-7049 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7050                     TCGA-BQ-7051 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7053                     TCGA-BQ-7055 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7056                     TCGA-BQ-7058 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7059                     TCGA-BQ-7060 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-BQ-7061                     TCGA-BQ-7062 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-5560                     TCGA-DW-5561 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7834                     TCGA-DW-7836 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7837                     TCGA-DW-7838 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7839                     TCGA-DW-7840 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DW-7841                     TCGA-DW-7842 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6131                     TCGA-DZ-6132 
  "DEL PEAK 16(XQ21.31) MUTATED" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6133                     TCGA-DZ-6134 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-DZ-6135                     TCGA-EV-5901 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-EV-5902                     TCGA-EV-5903 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6789                     TCGA-G7-6790 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6792                     TCGA-G7-6793 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-G7-6795                     TCGA-G7-6796 
"DEL PEAK 16(XQ21.31) WILD-TYPE" "DEL PEAK 16(XQ21.31) WILD-TYPE" 
                    TCGA-G7-6797                     TCGA-G7-7502 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
                    TCGA-GL-6846                     TCGA-GL-7966 
"DEL PEAK 16(XQ21.31) WILD-TYPE"   "DEL PEAK 16(XQ21.31) MUTATED" 
[1] "hr=" "6.8"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(XQ21.31) MUTATED      8    7
  DEL PEAK 16(XQ21.31) WILD-TYPE   61   25
        clus
vv       DEL PEAK 16(XQ21.31) MUTATED DEL PEAK 16(XQ21.31) WILD-TYPE
  FEMALE                            7                             25
  MALE                              8                             61
D16V4, continuous
D16V5, multiclass
       clus
vv      DEL PEAK 16(XQ21.31) MUTATED DEL PEAK 16(XQ21.31) WILD-TYPE
  T1                               5                             51
  T2                               1                             12
  T3+T4                            9                             23
D16V6, multiclass
    clus
vv   DEL PEAK 16(XQ21.31) MUTATED DEL PEAK 16(XQ21.31) WILD-TYPE
  N0                            3                             17
  N1                            4                              7
  N2                            1                              3
D16V7, multiclass
    clus
vv   DEL PEAK 16(XQ21.31) MUTATED DEL PEAK 16(XQ21.31) WILD-TYPE
  M0                            6                             48
  M1                            2                              3
  MX                            6                             27
D16V8, multiclass
     clus
vv    DEL PEAK 16(XQ21.31) MUTATED DEL PEAK 16(XQ21.31) WILD-TYPE
  I                              5                             46
  II                             1                              6
  III                            5                             18
  IV                             3                              6

Clustering(17) Variable = Del Peak 17(Xq28) mutation analysis
D17V1, survival
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK 17(XQ28) MUTATED"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-AL-3466 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
  "DEL PEAK 17(XQ28) MUTATED" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
  "DEL PEAK 17(XQ28) MUTATED" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7502 
  "DEL PEAK 17(XQ28) MUTATED"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-GL-6846                  TCGA-GL-7966 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK 17(XQ28) MUTATED"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-AL-3466 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
  "DEL PEAK 17(XQ28) MUTATED" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
  "DEL PEAK 17(XQ28) MUTATED" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7502 
  "DEL PEAK 17(XQ28) MUTATED"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-GL-6846                  TCGA-GL-7966 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-A4-7286                  TCGA-A4-7287 
  "DEL PEAK 17(XQ28) MUTATED"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-A4-7288                  TCGA-A4-7583 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-A4-7585                  TCGA-A4-7732 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-A4-7734                  TCGA-A4-7915 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-A4-7996                  TCGA-AL-3466 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-AL-3467                  TCGA-AL-3468 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-AL-3471                  TCGA-AL-3472 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-AL-3473                  TCGA-AL-7173 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B1-5398                  TCGA-B1-7332 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-B3-3925                  TCGA-B3-3926 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-B3-4103                  TCGA-B3-4104 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-4113                  TCGA-B9-4114 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-4115                  TCGA-B9-4116 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-4117                  TCGA-B9-4617 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-5155                  TCGA-B9-5156 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-B9-7268                  TCGA-BQ-5875 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5876                  TCGA-BQ-5877 
  "DEL PEAK 17(XQ28) MUTATED" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5878                  TCGA-BQ-5879 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-BQ-5880                  TCGA-BQ-5881 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5882                  TCGA-BQ-5883 
  "DEL PEAK 17(XQ28) MUTATED" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5884                  TCGA-BQ-5885 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5886                  TCGA-BQ-5887 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5888                  TCGA-BQ-5889 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5890                  TCGA-BQ-5891 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5892                  TCGA-BQ-5893 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-5894                  TCGA-BQ-7044 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7045                  TCGA-BQ-7046 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7048                  TCGA-BQ-7049 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7050                  TCGA-BQ-7051 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7053                  TCGA-BQ-7055 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7056                  TCGA-BQ-7058 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7059                  TCGA-BQ-7060 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-BQ-7061                  TCGA-BQ-7062 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-5560                  TCGA-DW-5561 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-7834                  TCGA-DW-7836 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-7837                  TCGA-DW-7838 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-7839                  TCGA-DW-7840 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DW-7841                  TCGA-DW-7842 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DZ-6131                  TCGA-DZ-6132 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DZ-6133                  TCGA-DZ-6134 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-DZ-6135                  TCGA-EV-5901 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-EV-5902                  TCGA-EV-5903 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-G7-6789                  TCGA-G7-6790 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-G7-6792                  TCGA-G7-6793 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-G7-6795                  TCGA-G7-6796 
"DEL PEAK 17(XQ28) WILD-TYPE" "DEL PEAK 17(XQ28) WILD-TYPE" 
                 TCGA-G7-6797                  TCGA-G7-7502 
  "DEL PEAK 17(XQ28) MUTATED"   "DEL PEAK 17(XQ28) MUTATED" 
                 TCGA-GL-6846                  TCGA-GL-7966 
"DEL PEAK 17(XQ28) WILD-TYPE"   "DEL PEAK 17(XQ28) MUTATED" 
[1] "hr=" "11" 
D17V2, continuous
D17V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(XQ28) MUTATED      7    7
  DEL PEAK 17(XQ28) WILD-TYPE   62   25
        clus
vv       DEL PEAK 17(XQ28) MUTATED DEL PEAK 17(XQ28) WILD-TYPE
  FEMALE                         7                          25
  MALE                           7                          62
D17V4, continuous
D17V5, multiclass
       clus
vv      DEL PEAK 17(XQ28) MUTATED DEL PEAK 17(XQ28) WILD-TYPE
  T1                            6                          50
  T2                            1                          12
  T3+T4                         7                          25
D17V6, multiclass
    clus
vv   DEL PEAK 17(XQ28) MUTATED DEL PEAK 17(XQ28) WILD-TYPE
  N0                         2                          18
  N1                         3                           8
  N2                         1                           3
D17V7, multiclass
    clus
vv   DEL PEAK 17(XQ28) MUTATED DEL PEAK 17(XQ28) WILD-TYPE
  M0                         6                          48
  M1                         1                           4
  MX                         6                          27
D17V8, multiclass
     clus
vv    DEL PEAK 17(XQ28) MUTATED DEL PEAK 17(XQ28) WILD-TYPE
  I                           5                          46
  II                          1                           6
  III                         5                          18
  IV                          2                           7
                         V1.D                            V2 
              "Time to Death"                         "AGE" 
                           V3                            V4 
                     "GENDER" "KARNOFSKY.PERFORMANCE.SCORE" 
                           V5                            V6 
                "PATHOLOGY.T"                 "PATHOLOGY.N" 
                           V7                            V8 
        "PATHOLOGICSPREAD(M)"                 "TUMOR.STAGE" 
> q(save="no")
