
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LGG-TP/2283715/1.GDAC_mergedClustering.Finished/LGG-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LGG-TP/2172584/1.GDAC_clinicalDataPicker.Finished/LGG-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=208, in cluster file=181, common to both=179
[1]   8 179
[1] "MRNA_CNMF"
[1] 3
 1  2  3 
 9 10  8 
 1  2  3 
 9 10  8 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
 9  7 11 
 1  2  3 
 9  7 11 
[1] "CN_CNMF"
[1] 3
 1  2  3 
59 50 69 
 1  2  3 
59 50 69 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4 
76 29 19 50 
 1  2  3  4 
76 29 19 50 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4 
23 29 24 34 
 1  2  3  4 
23 29 24 34 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3  4 
35 35 20 20 
 1  2  3  4 
35 35 20 20 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3  4  5  6  7 
23 29 19 20 47 31  9 
 1  2  3  4  5  6  7 
23 29 19 20 47 31  9 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
 7 94 77 
 1  2  3 
 7 94 77 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "BATCHNUMBER"                           

Input Data has 13 rows and 179 columns.

[1] "Batch" "13"   
[1] "Last Follow UP"
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
         143          234         1335          481          323         1965 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
         857            3          638          289          194          538 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
         725          546          378          257          229          243 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
         224          200         2977         1786         1726         1458 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
        1594         1419         1526         1354          404         1614 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DU-5847 
         607          968          921          438          244          547 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
         442          530           NA          407          257          207 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
        5546          576          531          460         6423         1219 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
         682         1491         2286         1401           NA           37 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        2660          213          354           NA          605          511 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
        2875         3469          242          234           NA           NA 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
        4752         4205           NA           NA           NA           NA 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
          NA         2761           NA          800           NA           NA 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
        2868           NA           NA           NA           NA         1834 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8162 TCGA-DU-8163 
          NA         1277           84           NA          121          197 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-E1-5302 
         201          184           67           97          107         1525 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
        2051         1251         2432         1762         4084         2378 
TCGA-E1-5319 TCGA-E1-5322 TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
        2907         3978          160          787          407          377 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
         979          220          189          142          102          126 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
         467          124          802          233          283           27 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
         105          100           69          121          215           96 
TCGA-FG-8191 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
         199            4            3          146          238          268 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
           4            1          503          114          446          199 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
         194           13         2231         1800         1644         4687 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
         121           94          907          705         3283          139 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7616 
         526           NA          671         1399         1706           NA 
TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
         434          494           23          184         1300           NA 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
         964          124            3            3           90          533 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 
         210          442          608          409          141          165 
TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 TCGA-IK-7675 TCGA-IK-8125 
         854          285           13           NA          909 
Variable 1:'AGE':	nDistinctValues=50,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=50,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=142,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=20,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=130,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'BATCH.NUMBER':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "HISTOLOGICAL.TYPE"                     
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 179 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=50, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2      0 1
  subtype1 5 4
  subtype2 7 3
  subtype3 6 2
subtype1 subtype2 subtype3 
       9       10        8 
subtype1 subtype2 subtype3 
       4        3        2 
$subtype1
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-DB-5273 TCGA-DB-5280 TCGA-DH-5142 
       43.89        15.81        10.62        58.72        13.28        30.28 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 
       50.14        67.43       130.78 

$subtype2
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-DB-5274 TCGA-DB-5275 TCGA-DH-5140 
       64.60         0.10         9.50        56.75        47.93        19.96 
TCGA-DH-5141 TCGA-DH-5144 TCGA-E1-5304 TCGA-E1-5318 
       31.82         8.02        41.13        78.18 

$subtype3
TCGA-CS-5395 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5281 
       20.98        97.87        52.41        46.65        50.17        53.06 
TCGA-DH-5143 TCGA-E1-5311 
       14.40       134.27 

subtype1 subtype2 subtype3 
   10.62     0.10    14.40 
subtype1 subtype2 subtype3 
  130.78    78.18   134.27 
subtype1 subtype2 subtype3 
  43.890   36.475   51.290 
[1] "10.6 - 130.8 (43.9)" "0.1 - 78.2 (36.5)"   "14.4 - 134.3 (51.3)"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
D1V2, continuous
D1V3, binary
          cls
clus       0 1
  subtype1 2 7
  subtype2 6 4
  subtype3 1 7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    7
  subtype2    6    4
  subtype3    1    7
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2        6        1
  MALE          7        4        7
D1V4, continuous
D1V5, multiclass
D1V6, binary
          cls
clus       0 1
  subtype1 7 2
  subtype2 8 2
  subtype3 4 4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    2
  subtype2    8    2
  subtype3    4    4
     clus
vv    subtype1 subtype2 subtype3
  NO         7        8        4
  YES        2        2        4

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2      0 1
  subtype1 5 4
  subtype2 5 2
  subtype3 8 3
subtype1 subtype2 subtype3 
       9        7       11 
subtype1 subtype2 subtype3 
       4        2        3 
$subtype1
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-DB-5273 TCGA-DB-5280 TCGA-DH-5142 
       43.89        15.81        10.62        58.72        13.28        30.28 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 
       50.14        67.43       130.78 

$subtype2
TCGA-CS-5395 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5281 TCGA-DH-5143 
       20.98        97.87        52.41        50.17        53.06        14.40 
TCGA-E1-5311 
      134.27 

$subtype3
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5277 
       64.60         0.10         9.50        56.75        47.93        46.65 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5144 TCGA-E1-5304 TCGA-E1-5318 
       19.96        31.82         8.02        41.13        78.18 

subtype1 subtype2 subtype3 
   10.62    14.40     0.10 
subtype1 subtype2 subtype3 
  130.78   134.27    78.18 
subtype1 subtype2 subtype3 
   43.89    52.41    41.13 
[1] "10.6 - 130.8 (43.9)" "14.4 - 134.3 (52.4)" "0.1 - 78.2 (41.1)"  
 [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype2" "subtype3" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype2" "subtype3" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype2" "subtype3" "subtype1"
D2V2, continuous
D2V3, binary
          cls
clus       0 1
  subtype1 2 7
  subtype2 1 6
  subtype3 6 5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    7
  subtype2    1    6
  subtype3    6    5
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2        1        6
  MALE          7        6        5
D2V4, continuous
D2V5, multiclass
D2V6, binary
          cls
clus       0 1
  subtype1 7 2
  subtype2 4 3
  subtype3 8 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    2
  subtype2    4    3
  subtype3    8    3
     clus
vv    subtype1 subtype2 subtype3
  NO         7        4        8
  YES        2        3        3

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 37 22
  subtype2 33 17
  subtype3 57 11
subtype1 subtype2 subtype3 
      59       50       68 
subtype1 subtype2 subtype3 
      22       17       11 
$subtype1
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5397 
        4.70         7.69        43.89        28.18        20.98         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6667 TCGA-DB-5270 TCGA-DH-5140 TCGA-DU-5847 
       17.69        23.84         7.53        97.87        19.96        17.98 
TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-6392 TCGA-DU-6395 
        6.74        13.38         8.45         6.81       211.17        49.02 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
       87.45         7.00        11.64       133.74        19.89        16.80 
TCGA-DU-6407 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
       94.52         7.69        11.47         6.51         8.84       117.40 
TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7306 TCGA-DU-8158 
       90.77        26.30        10.36         7.96        41.98         5.10 
TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-FG-5965 
        3.98         6.48         6.05         2.20         3.19        32.19 
TCGA-FG-6688 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7643 TCGA-FG-8182 TCGA-HT-7470 
        7.23         3.35         4.14         0.89         3.29         8.81 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7485 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7684 
        6.38         0.43         3.98        23.18       107.93         6.05 
TCGA-HT-7686 TCGA-HT-7690 TCGA-HT-7693 TCGA-HW-7490 TCGA-HW-7493 
       42.74         0.10        17.52         5.42         9.37 

$subtype2
TCGA-CS-4943 TCGA-CS-6665 TCGA-CS-6666 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5281 
       15.81        12.43         8.45        47.93        46.65        53.06 
TCGA-DU-5851 TCGA-DU-5871 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6408 
       17.42        18.94        75.16        65.72         1.22       114.05 
TCGA-DU-6410 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7018 TCGA-DU-7298 
        7.96        62.96       156.23        14.99        30.67        18.90 
TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8168 
       43.99        25.91        60.30        23.31         2.76         3.52 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5322 TCGA-EZ-7264 
       67.43        41.13        79.96        57.93       130.78         5.26 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-8185 
       25.87        13.38        12.39        15.35         4.08         2.27 
TCGA-FG-8188 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7476 
        3.16         7.82         0.13        16.54        14.66         6.54 
TCGA-HT-7482 TCGA-HT-7606 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7692 TCGA-HW-7489 
       54.05        17.29        31.69         4.08         2.96         4.64 
TCGA-HW-7491 TCGA-IK-7675 
       28.08        18.97 

$subtype3
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6290 TCGA-CS-6668 
       10.62        64.60         0.10         9.50        17.95         7.99 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5276 TCGA-DB-5278 
        7.36         6.58        58.72        56.75        52.41        50.17 
TCGA-DB-5279 TCGA-DB-5280 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 
       44.52        13.28        31.82        30.28        14.40         8.02 
TCGA-DU-5849 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
       14.53       182.33        17.46        15.12        40.08        22.42 
TCGA-DU-6397 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7294 TCGA-DU-7300 TCGA-DU-8164 
       46.06       138.25       105.21        94.29        62.01         6.61 
TCGA-E1-5302 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-FG-6689 TCGA-FG-6690 
       50.14       134.27        78.18        95.57         6.21         4.67 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8181 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8191 
        7.66         9.30         3.45         3.98         7.07         6.54 
TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7472 TCGA-HT-7474 TCGA-HT-7480 
        0.13         0.10         4.80         0.03         3.75        73.35 
TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7605 TCGA-HT-7607 
       59.18       154.09         3.09        29.82         4.57         3.16 
TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7616 TCGA-HT-7620 TCGA-HT-7677 
       22.06        45.99        56.09         0.23        14.27        16.24 
TCGA-HT-7680 TCGA-HT-7691 TCGA-HT-7694 TCGA-HT-7695 TCGA-HW-7486 TCGA-HW-7487 
        0.76         0.10         6.90        14.53        19.99        13.45 
TCGA-HW-7495 TCGA-IK-8125 
        0.43        29.88 

subtype1 subtype2 subtype3 
    0.10     0.13     0.03 
subtype1 subtype2 subtype3 
  211.17   156.23   182.33 
subtype1 subtype2 subtype3 
    8.84    18.16    14.53 
[1] "0.1 - 211.2 (8.8)"  "0.1 - 156.2 (18.2)" "0.0 - 182.3 (14.5)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[121] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[121] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[121] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype3"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 33 26
  subtype2 20 30
  subtype3 23 46
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33   26
  subtype2   20   30
  subtype3   23   46
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       33       20       23
  MALE         26       30       46
D3V4, continuous
D3V5, multiclass
D3V6, binary
          cls
clus        0  1
  subtype1 35 24
  subtype2 32 18
  subtype3 29 40
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   35   24
  subtype2   32   18
  subtype3   29   40
     clus
vv    subtype1 subtype2 subtype3
  NO        35       32       29
  YES       24       18       40

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 56 20
  subtype2 13 16
  subtype3 17  2
  subtype4 41  8
subtype1 subtype2 subtype3 subtype4 
      76       29       19       49 
subtype1 subtype2 subtype3 subtype4 
      20       16        2        8 
$subtype1
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-6665 TCGA-CS-6666 
        4.70        43.89        15.81        28.18        12.43         8.45 
TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5280 TCGA-DB-5281 
        7.53        58.72        47.93        46.65        13.28        53.06 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5871 
       30.28        14.40        17.42        13.38         6.81        18.94 
TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 
       17.46        49.02        75.16        65.72        87.45        94.52 
TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7014 
      114.05         7.69        62.96       156.23        14.99       117.40 
TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 
       90.77        26.30        43.99        25.91        23.31        41.98 
TCGA-DU-7309 TCGA-DU-8163 TCGA-DU-8166 TCGA-DU-8167 TCGA-E1-5302 TCGA-E1-5303 
        2.76         6.48         2.20         3.19        50.14        67.43 
TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5322 TCGA-FG-5965 TCGA-FG-6689 
       41.13        79.96        57.93       130.78        32.19         6.21 
TCGA-FG-6690 TCGA-FG-7636 TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8191 TCGA-FN-7833 
        4.67         4.08         2.27         3.16         6.54         0.13 
TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 
        8.81         0.03        16.54        14.66         6.54         6.38 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7604 TCGA-HT-7606 
       54.05       154.09         3.98         3.09       107.93        17.29 
TCGA-HT-7609 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 
       45.99         6.05        42.74        31.69         4.08         0.10 
TCGA-HT-7693 TCGA-HW-7490 TCGA-HW-7493 TCGA-IK-7675 
       17.52         5.42         9.37        18.97 

$subtype2
TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-DH-5140 
        7.69        20.98         6.38        17.69        23.84        19.96 
TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6403 TCGA-DU-6404 
       17.98         6.74         8.45       211.17        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 
       19.89        16.80        11.47         6.51         8.84        10.36 
TCGA-DU-7292 TCGA-DU-8158 TCGA-DU-8162 TCGA-DU-8165 TCGA-FG-5963 TCGA-FG-6688 
        7.96         5.10         3.98         6.05        13.38         7.23 
TCGA-FG-6692 TCGA-FG-7643 TCGA-HT-7469 TCGA-HT-7680 TCGA-HT-7691 
        4.14         0.89         7.82         0.76         0.10 

$subtype3
TCGA-CS-4944 TCGA-CS-6290 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5278 
       10.62        17.95         7.36        97.87        52.41        50.17 
TCGA-DU-7298 TCGA-FG-6691 TCGA-FG-8181 TCGA-FG-8182 TCGA-HT-7467 TCGA-HT-7474 
       18.90         3.35         3.45         3.29         0.10         3.75 
TCGA-HT-7479 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7620 
        0.43        29.82        23.18         3.16        56.09        14.27 
TCGA-HW-7489 
        4.64 

$subtype4
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5274 
       64.60         0.10         9.50         7.99         6.58        56.75 
TCGA-DB-5279 TCGA-DH-5141 TCGA-DH-5144 TCGA-DU-5849 TCGA-DU-5870 TCGA-DU-5874 
       44.52        31.82         8.02        14.53       182.33        15.12 
TCGA-DU-6393 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7009 TCGA-DU-7018 TCGA-DU-7294 
       40.08         1.22         7.96       138.25        30.67        94.29 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-8164 TCGA-DU-8168 TCGA-E1-5311 TCGA-E1-5318 
       62.01        60.30         6.61         3.52       134.27        78.18 
TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7637 
       95.57         5.26        25.87        12.39        15.35        26.37 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8186 TCGA-FG-8187 TCGA-HT-7468 TCGA-HT-7471 
        7.66         9.30         3.98         7.07         4.80         0.13 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7605 TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7692 
       73.35        59.18         4.57         0.23        16.24         2.96 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 
        6.90        14.53        19.99        13.45        28.08         0.43 
TCGA-IK-8125 
       29.88 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.10     0.10     0.10 
subtype1 subtype2 subtype3 subtype4 
  156.23   211.17    97.87   182.33 
subtype1 subtype2 subtype3 subtype4 
   17.49     8.45    10.62    14.53 
[1] "0.0 - 156.2 (17.5)" "0.1 - 211.2 (8.4)"  "0.1 - 97.9 (10.6)" 
[4] "0.1 - 182.3 (14.5)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
 [31] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype2"
 [37] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype4"
 [49] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [73] "subtype2" "subtype2" "subtype4" "subtype3" "subtype1" "subtype4"
 [79] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
 [91] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
[103] "subtype2" "subtype4" "subtype1" "subtype2" "subtype1" "subtype1"
[109] "subtype3" "subtype2" "subtype4" "subtype1" "subtype4" "subtype4"
[115] "subtype4" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
[121] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype4"
[127] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype4" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype4" "subtype3" "subtype4" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype2" "subtype4" "subtype1"
[163] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3" "subtype1"
[169] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
 [31] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype2"
 [37] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype4"
 [49] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [73] "subtype2" "subtype2" "subtype4" "subtype3" "subtype1" "subtype4"
 [79] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
 [91] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
[103] "subtype2" "subtype4" "subtype1" "subtype2" "subtype1" "subtype1"
[109] "subtype3" "subtype2" "subtype4" "subtype1" "subtype4" "subtype4"
[115] "subtype4" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
[121] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype4"
[127] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype4" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype4" "subtype3" "subtype4" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype2" "subtype4" "subtype1"
[163] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3" "subtype1"
[169] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
 [31] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype2"
 [37] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype4"
 [49] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [73] "subtype2" "subtype2" "subtype4" "subtype3" "subtype1" "subtype4"
 [79] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
 [91] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
[103] "subtype2" "subtype4" "subtype1" "subtype2" "subtype1" "subtype1"
[109] "subtype3" "subtype2" "subtype4" "subtype1" "subtype4" "subtype4"
[115] "subtype4" "subtype2" "subtype3" "subtype3" "subtype1" "subtype4"
[121] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype4"
[127] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype4" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype4" "subtype3" "subtype4" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype2" "subtype4" "subtype1"
[163] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3" "subtype1"
[169] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 28 48
  subtype2 20  9
  subtype3  6 13
  subtype4 22 28
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   28   48
  subtype2   20    9
  subtype3    6   13
  subtype4   22   28
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       28       20        6       22
  MALE         48        9       13       28
D4V4, continuous
D4V5, multiclass
D4V6, binary
          cls
clus        0  1
  subtype1 53 23
  subtype2 17 12
  subtype3  6 13
  subtype4 17 33
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   53   23
  subtype2   17   12
  subtype3    6   13
  subtype4   17   33
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        53       17        6       17
  YES       23       12       13       33

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1  7 16
  subtype2 19 10
  subtype3 17  7
  subtype4 26  8
subtype1 subtype2 subtype3 subtype4 
      23       29       24       34 
subtype1 subtype2 subtype3 subtype4 
      16       10        7        8 
$subtype1
TCGA-CS-4941 TCGA-CS-6666 TCGA-DH-5140 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 
        7.69         8.45        19.96        17.98         6.74         8.45 
TCGA-DU-6392 TCGA-DU-6396 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
      211.17        75.16         7.00        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-7013 TCGA-DU-7290 
       16.80        11.47        62.96        14.99         8.84        10.36 
TCGA-E1-5304 TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-6692 TCGA-IK-7675 
       41.13        13.38         7.23         4.14        18.97 

$subtype2
TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-6290 TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5280 
       43.89        10.62        17.95         7.53        58.72        13.28 
TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6401 
        6.81        18.94        17.46        49.02        65.72        87.45 
TCGA-DU-6407 TCGA-DU-7299 TCGA-DU-7301 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 
       94.52        43.99        25.91        50.14        67.43       130.78 
TCGA-FG-5965 TCGA-FG-6690 TCGA-FG-6691 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7478 
       32.19         4.67         3.35         0.03        16.54         6.38 
TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7604 TCGA-HT-7609 
        0.43        54.05         3.98       107.93        45.99 

$subtype3
TCGA-CS-4943 TCGA-CS-5390 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-5275 
       15.81        64.60         9.50         7.99        56.75        47.93 
TCGA-DH-5141 TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 
       31.82       182.33        15.12        40.08        22.42        46.06 
TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7018 TCGA-DU-7294 TCGA-E1-5318 TCGA-E1-5319 
        1.22         7.96        30.67        94.29        78.18        95.57 
TCGA-EZ-7264 TCGA-FG-7637 TCGA-HT-7468 TCGA-HT-7481 TCGA-HW-7486 TCGA-HW-7491 
        5.26        26.37         4.80        59.18        19.99        28.08 

$subtype4
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5279 TCGA-DB-5281 TCGA-DH-5143 
        7.36         6.58        97.87        44.52        53.06        14.40 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7008 TCGA-DU-7009 
       14.53        17.42       114.05         7.69       156.23       138.25 
TCGA-DU-7011 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7300 TCGA-E1-5305 
      105.21        26.30         7.96        18.90        62.01        79.96 
TCGA-E1-5307 TCGA-E1-5311 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6689 TCGA-FG-7638 
       57.93       134.27        25.87        12.39         6.21         7.66 
TCGA-HT-7467 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7483 TCGA-HT-7603 
        0.10         3.75        14.66         6.54       154.09        23.18 
TCGA-HT-7610 TCGA-HW-7487 TCGA-HW-7493 TCGA-HW-7495 
       56.09        13.45         9.37         0.43 

subtype1 subtype2 subtype3 subtype4 
    4.14     0.03     1.22     0.10 
subtype1 subtype2 subtype3 subtype4 
  211.17   130.78   182.33   156.23 
subtype1 subtype2 subtype3 subtype4 
  13.380   25.910   29.375   18.160 
[1] "4.1 - 211.2 (13.4)" "0.0 - 130.8 (25.9)" "1.2 - 182.3 (29.4)"
[4] "0.1 - 156.2 (18.2)"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
 [13] "subtype4" "subtype2" "subtype3" "subtype3" "subtype4" "subtype2"
 [19] "subtype4" "subtype1" "subtype3" "subtype4" "subtype1" "subtype4"
 [25] "subtype4" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
 [49] "subtype3" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
 [55] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
 [61] "subtype4" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype1"
 [79] "subtype4" "subtype2" "subtype1" "subtype4" "subtype2" "subtype2"
 [85] "subtype1" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
 [91] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype4" "subtype2" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype3" "subtype4" "subtype3" "subtype4"
[109] "subtype4" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
 [13] "subtype4" "subtype2" "subtype3" "subtype3" "subtype4" "subtype2"
 [19] "subtype4" "subtype1" "subtype3" "subtype4" "subtype1" "subtype4"
 [25] "subtype4" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
 [49] "subtype3" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
 [55] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
 [61] "subtype4" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype1"
 [79] "subtype4" "subtype2" "subtype1" "subtype4" "subtype2" "subtype2"
 [85] "subtype1" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
 [91] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype4" "subtype2" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype3" "subtype4" "subtype3" "subtype4"
[109] "subtype4" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
 [13] "subtype4" "subtype2" "subtype3" "subtype3" "subtype4" "subtype2"
 [19] "subtype4" "subtype1" "subtype3" "subtype4" "subtype1" "subtype4"
 [25] "subtype4" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
 [49] "subtype3" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
 [55] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
 [61] "subtype4" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype1"
 [79] "subtype4" "subtype2" "subtype1" "subtype4" "subtype2" "subtype2"
 [85] "subtype1" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
 [91] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype4" "subtype2" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype3" "subtype4" "subtype3" "subtype4"
[109] "subtype4" "subtype1"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 14  9
  subtype2 11 18
  subtype3 12 12
  subtype4 13 21
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14    9
  subtype2   11   18
  subtype3   12   12
  subtype4   13   21
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       14       11       12       13
  MALE          9       18       12       21
D5V4, continuous
D5V5, multiclass
D5V6, binary
          cls
clus        0  1
  subtype1 17  6
  subtype2 23  6
  subtype3  8 16
  subtype4 18 16
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17    6
  subtype2   23    6
  subtype3    8   16
  subtype4   18   16
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        17       23        8       18
  YES        6        6       16       16

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 27  8
  subtype2 23 12
  subtype3 13  7
  subtype4  6 14
subtype1 subtype2 subtype3 subtype4 
      35       35       20       20 
subtype1 subtype2 subtype3 subtype4 
       8       12        7       14 
$subtype1
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5279 TCGA-DB-5281 TCGA-DH-5143 
        7.36         6.58        97.87        44.52        53.06        14.40 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7008 TCGA-DU-7009 
       14.53        17.42         1.22         7.96       156.23       138.25 
TCGA-DU-7011 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7300 TCGA-E1-5305 
      105.21        26.30         7.96        18.90        62.01        79.96 
TCGA-E1-5307 TCGA-E1-5311 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6689 TCGA-FG-7638 
       57.93       134.27        25.87        12.39         6.21         7.66 
TCGA-HT-7467 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7481 TCGA-HT-7483 
        0.10         3.75        14.66         6.54        59.18       154.09 
TCGA-HT-7603 TCGA-HT-7610 TCGA-HW-7487 TCGA-HW-7493 TCGA-HW-7495 
       23.18        56.09        13.45         9.37         0.43 

$subtype2
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
       43.89        15.81        10.62        17.95         8.45         7.53 
TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5280 TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-5872 
       58.72        47.93        13.28         6.81        18.94        17.46 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 TCGA-DU-6408 
       49.02        75.16        65.72        87.45        94.52       114.05 
TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7301 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 
        7.69        62.96        25.91        50.14        67.43       130.78 
TCGA-FG-5965 TCGA-FG-6690 TCGA-FG-6691 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7478 
       32.19         4.67         3.35         0.03        16.54         6.38 
TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7604 TCGA-HT-7609 
        0.43        54.05         3.98       107.93        45.99 

$subtype3
TCGA-CS-5390 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 TCGA-DH-5141 TCGA-DU-5870 
       64.60         9.50         7.99        56.75        31.82       182.33 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-7018 TCGA-DU-7294 
       15.12        40.08        22.42        46.06        30.67        94.29 
TCGA-DU-7299 TCGA-E1-5318 TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-7637 TCGA-HT-7468 
       43.99        78.18        95.57         5.26        26.37         4.80 
TCGA-HW-7486 TCGA-HW-7491 
       19.99        28.08 

$subtype4
TCGA-CS-4941 TCGA-DH-5140 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 
        7.69        19.96        17.98         6.74         8.45       211.17 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 
        7.00        11.64       133.74        19.89        16.80        11.47 
TCGA-DU-7010 TCGA-DU-7013 TCGA-DU-7290 TCGA-E1-5304 TCGA-FG-5963 TCGA-FG-6688 
       14.99         8.84        10.36        41.13        13.38         7.23 
TCGA-FG-6692 TCGA-IK-7675 
        4.14        18.97 

subtype1 subtype2 subtype3 subtype4 
    0.10     0.03     4.80     4.14 
subtype1 subtype2 subtype3 subtype4 
  156.23   130.78   182.33   211.17 
subtype1 subtype2 subtype3 subtype4 
  17.420   25.910   31.245   12.510 
[1] "0.1 - 156.2 (17.4)" "0.0 - 130.8 (25.9)" "4.8 - 182.3 (31.2)"
[4] "4.1 - 211.2 (12.5)"
  [1] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [43] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype4" "subtype2" "subtype1" "subtype1"
 [55] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype4"
 [61] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype4"
 [79] "subtype1" "subtype2" "subtype4" "subtype1" "subtype2" "subtype2"
 [85] "subtype4" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype4"
  [1] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [43] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype4" "subtype2" "subtype1" "subtype1"
 [55] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype4"
 [61] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype4"
 [79] "subtype1" "subtype2" "subtype4" "subtype1" "subtype2" "subtype2"
 [85] "subtype4" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype4"
  [1] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [43] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype4" "subtype2" "subtype1" "subtype1"
 [55] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype4"
 [61] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype4"
 [79] "subtype1" "subtype2" "subtype4" "subtype1" "subtype2" "subtype2"
 [85] "subtype4" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype4"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 13 22
  subtype2 13 22
  subtype3 11  9
  subtype4 13  7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   22
  subtype2   13   22
  subtype3   11    9
  subtype4   13    7
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       13       13       11       13
  MALE         22       22        9        7
D6V4, continuous
D6V5, multiclass
D6V6, binary
          cls
clus        0  1
  subtype1 17 18
  subtype2 25 10
  subtype3  8 12
  subtype4 16  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   18
  subtype2   25   10
  subtype3    8   12
  subtype4   16    4
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        17       25        8       16
  YES       18       10       12        4

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 19  4
  subtype2 17 12
  subtype3 11  8
  subtype4 15  4
  subtype5 39  8
  subtype6 19 12
  subtype7  8  1
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
      23       29       19       19       47       31        9 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
       4       12        8        4        8       12        1 
$subtype1
TCGA-CS-4938 TCGA-CS-6666 TCGA-DU-7010 TCGA-DU-7015 TCGA-DU-7299 TCGA-DU-7301 
        4.70         8.45        14.99        90.77        43.99        25.91 
TCGA-DU-8163 TCGA-E1-5302 TCGA-FG-6691 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8188 
        6.48        50.14         3.35         3.29         2.27         3.16 
TCGA-FG-8191 TCGA-FN-7833 TCGA-HT-7472 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 
        6.54         0.13         0.03         0.43        54.05         3.98 
TCGA-HT-7604 TCGA-HT-7609 TCGA-HT-7684 TCGA-HT-7690 TCGA-HT-7692 
      107.93        45.99         6.05         0.10         2.96 

$subtype2
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-5396 TCGA-DB-5270 
        7.69        43.89        15.81        28.18         9.50        97.87 
TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5280 TCGA-DB-5281 TCGA-DH-5142 
       58.72        47.93        46.65        13.28        53.06        30.28 
TCGA-DH-5143 TCGA-DU-6402 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7013 TCGA-E1-5303 
       14.40         7.00        11.47        62.96         8.84        67.43 
TCGA-E1-5304 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5322 TCGA-FG-6692 TCGA-FG-7636 
       41.13       134.27        78.18       130.78         4.14         4.08 
TCGA-HT-7468 TCGA-HT-7478 TCGA-HT-7686 TCGA-HT-7691 TCGA-IK-7675 
        4.80         6.38        42.74         0.10        18.97 

$subtype3
TCGA-CS-4944 TCGA-CS-5395 TCGA-CS-6186 TCGA-CS-6667 TCGA-DU-5847 TCGA-DU-5855 
       10.62        20.98        17.69         7.53        17.98         6.81 
TCGA-DU-5872 TCGA-DU-6396 TCGA-DU-6405 TCGA-DU-7012 TCGA-DU-7014 TCGA-DU-7290 
       17.46        75.16        19.89         6.51       117.40        10.36 
TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8165 TCGA-HT-7473 TCGA-HT-7608 TCGA-HT-7680 
       41.98         5.10         6.05        16.54        22.06         0.76 
TCGA-HW-7490 
        5.42 

$subtype4
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-6668 TCGA-DB-5274 TCGA-DH-5140 TCGA-DH-5141 
       64.60         0.10         7.99        56.75        19.96        31.82 
TCGA-DH-5144 TCGA-DU-6397 TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-8168 TCGA-EZ-7264 
        8.02        46.06        30.67        94.29         3.52         5.26 
TCGA-FG-6690 TCGA-FG-7637 TCGA-HT-7471 TCGA-HT-7606 TCGA-HT-7616 TCGA-HT-7677 
        4.67        26.37         0.13        17.29         0.23        16.24 
TCGA-HW-7491 
       28.08 

$subtype5
TCGA-CS-5397 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5278 TCGA-DU-5851 TCGA-DU-6542 
        6.38         7.36         6.58        50.17        17.42         7.69 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7300 
      156.23       138.25        26.30         7.96        18.90        62.01 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8166 
       60.30        23.31         2.76         3.98         6.61         2.20 
TCGA-DU-8167 TCGA-E1-5305 TCGA-E1-5307 TCGA-FG-6689 TCGA-FG-7638 TCGA-FG-7641 
        3.19        79.96        57.93         6.21         7.66         9.30 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8186 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7474 
        0.89         3.45         3.98         0.10         8.81         3.75 
TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7603 
       14.66         6.54        73.35        59.18       154.09        23.18 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7688 TCGA-HT-7694 TCGA-HT-7695 
        4.57         3.16        56.09        31.69         6.90        14.53 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 TCGA-IK-8125 
       13.45         4.64         9.37         0.43        29.88 

$subtype6
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-DB-5279 TCGA-DU-5849 TCGA-DU-5852 
       23.84        17.95        12.43        44.52        14.53         6.74 
TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5874 TCGA-DU-6392 
       13.38         8.45       182.33        18.94        15.12       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6400 TCGA-DU-6401 
       40.08        22.42        49.02        65.72         1.22        87.45 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 
       11.64       133.74        16.80        94.52       114.05         7.96 
TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 TCGA-HT-7469 
       25.87        13.38        12.39        32.19         7.23         7.82 
TCGA-HT-7693 
       17.52 

$subtype7
TCGA-DB-5276 TCGA-E1-5319 TCGA-FG-7634 TCGA-FG-8187 TCGA-HT-7601 TCGA-HT-7602 
       52.41        95.57        15.35         7.07         3.09        29.82 
TCGA-HT-7620 TCGA-HT-7689 TCGA-HW-7486 
       14.27         4.08        19.99 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
    0.03     0.10     0.76     0.10     0.10     1.22     3.09 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  107.93   134.27   117.40    94.29   156.23   211.17    95.57 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
    6.05    28.18    16.54    17.29     8.81    17.95    15.35 
[1] "0.0 - 107.9 (6.0)"  "0.1 - 134.3 (28.2)" "0.8 - 117.4 (16.5)"
[4] "0.1 - 94.3 (17.3)"  "0.1 - 156.2 (8.8)"  "1.2 - 211.2 (17.9)"
[7] "3.1 - 95.6 (15.3)" 
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype4"
  [7] "subtype2" "subtype4" "subtype3" "subtype2" "subtype5" "subtype3"
 [13] "subtype6" "subtype6" "subtype6" "subtype1" "subtype3" "subtype4"
 [19] "subtype5" "subtype5" "subtype2" "subtype2" "subtype4" "subtype2"
 [25] "subtype7" "subtype2" "subtype5" "subtype6" "subtype2" "subtype2"
 [31] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
 [37] "subtype6" "subtype5" "subtype6" "subtype6" "subtype6" "subtype3"
 [43] "subtype6" "subtype6" "subtype3" "subtype6" "subtype6" "subtype6"
 [49] "subtype6" "subtype6" "subtype3" "subtype4" "subtype6" "subtype6"
 [55] "subtype6" "subtype2" "subtype6" "subtype6" "subtype3" "subtype6"
 [61] "subtype6" "subtype6" "subtype6" "subtype5" "subtype2" "subtype2"
 [67] "subtype5" "subtype5" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype1" "subtype4" "subtype5" "subtype3" "subtype5" "subtype4"
 [79] "subtype5" "subtype1" "subtype5" "subtype1" "subtype5" "subtype5"
 [85] "subtype3" "subtype5" "subtype3" "subtype5" "subtype1" "subtype5"
 [91] "subtype3" "subtype5" "subtype5" "subtype4" "subtype1" "subtype2"
 [97] "subtype2" "subtype5" "subtype5" "subtype2" "subtype2" "subtype7"
[103] "subtype2" "subtype4" "subtype6" "subtype6" "subtype6" "subtype6"
[109] "subtype6" "subtype5" "subtype4" "subtype1" "subtype2" "subtype7"
[115] "subtype2" "subtype4" "subtype5" "subtype5" "subtype5" "subtype5"
[121] "subtype1" "subtype1" "subtype5" "subtype7" "subtype1" "subtype1"
[127] "subtype1" "subtype5" "subtype2" "subtype6" "subtype5" "subtype4"
[133] "subtype1" "subtype3" "subtype5" "subtype5" "subtype5" "subtype2"
[139] "subtype1" "subtype5" "subtype5" "subtype1" "subtype5" "subtype1"
[145] "subtype7" "subtype7" "subtype5" "subtype1" "subtype5" "subtype4"
[151] "subtype5" "subtype3" "subtype1" "subtype5" "subtype4" "subtype7"
[157] "subtype4" "subtype3" "subtype1" "subtype2" "subtype5" "subtype7"
[163] "subtype1" "subtype2" "subtype1" "subtype6" "subtype5" "subtype5"
[169] "subtype7" "subtype5" "subtype5" "subtype3" "subtype4" "subtype5"
[175] "subtype5" "subtype2" "subtype5"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype4"
  [7] "subtype2" "subtype4" "subtype3" "subtype2" "subtype5" "subtype3"
 [13] "subtype6" "subtype6" "subtype6" "subtype1" "subtype3" "subtype4"
 [19] "subtype5" "subtype5" "subtype2" "subtype2" "subtype4" "subtype2"
 [25] "subtype7" "subtype2" "subtype5" "subtype6" "subtype2" "subtype2"
 [31] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
 [37] "subtype6" "subtype5" "subtype6" "subtype6" "subtype6" "subtype3"
 [43] "subtype6" "subtype6" "subtype3" "subtype6" "subtype6" "subtype6"
 [49] "subtype6" "subtype6" "subtype3" "subtype4" "subtype6" "subtype6"
 [55] "subtype6" "subtype2" "subtype6" "subtype6" "subtype3" "subtype6"
 [61] "subtype6" "subtype6" "subtype6" "subtype5" "subtype2" "subtype2"
 [67] "subtype5" "subtype5" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype1" "subtype4" "subtype5" "subtype3" "subtype5" "subtype4"
 [79] "subtype5" "subtype1" "subtype5" "subtype1" "subtype5" "subtype5"
 [85] "subtype3" "subtype5" "subtype3" "subtype5" "subtype1" "subtype5"
 [91] "subtype3" "subtype5" "subtype5" "subtype4" "subtype1" "subtype2"
 [97] "subtype2" "subtype5" "subtype5" "subtype2" "subtype2" "subtype7"
[103] "subtype2" "subtype4" "subtype6" "subtype6" "subtype6" "subtype6"
[109] "subtype6" "subtype5" "subtype4" "subtype1" "subtype2" "subtype7"
[115] "subtype2" "subtype4" "subtype5" "subtype5" "subtype5" "subtype5"
[121] "subtype1" "subtype1" "subtype5" "subtype7" "subtype1" "subtype1"
[127] "subtype1" "subtype5" "subtype2" "subtype6" "subtype5" "subtype4"
[133] "subtype1" "subtype3" "subtype5" "subtype5" "subtype5" "subtype2"
[139] "subtype1" "subtype5" "subtype5" "subtype1" "subtype5" "subtype1"
[145] "subtype7" "subtype7" "subtype5" "subtype1" "subtype5" "subtype4"
[151] "subtype5" "subtype3" "subtype1" "subtype5" "subtype4" "subtype7"
[157] "subtype4" "subtype3" "subtype1" "subtype2" "subtype5" "subtype7"
[163] "subtype1" "subtype2" "subtype1" "subtype6" "subtype5" "subtype5"
[169] "subtype7" "subtype5" "subtype5" "subtype3" "subtype4" "subtype5"
[175] "subtype5" "subtype2" "subtype5"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype4"
  [7] "subtype2" "subtype4" "subtype3" "subtype2" "subtype5" "subtype3"
 [13] "subtype6" "subtype6" "subtype6" "subtype1" "subtype3" "subtype4"
 [19] "subtype5" "subtype5" "subtype2" "subtype2" "subtype4" "subtype2"
 [25] "subtype7" "subtype2" "subtype5" "subtype6" "subtype2" "subtype2"
 [31] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
 [37] "subtype6" "subtype5" "subtype6" "subtype6" "subtype6" "subtype3"
 [43] "subtype6" "subtype6" "subtype3" "subtype6" "subtype6" "subtype6"
 [49] "subtype6" "subtype6" "subtype3" "subtype4" "subtype6" "subtype6"
 [55] "subtype6" "subtype2" "subtype6" "subtype6" "subtype3" "subtype6"
 [61] "subtype6" "subtype6" "subtype6" "subtype5" "subtype2" "subtype2"
 [67] "subtype5" "subtype5" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype1" "subtype4" "subtype5" "subtype3" "subtype5" "subtype4"
 [79] "subtype5" "subtype1" "subtype5" "subtype1" "subtype5" "subtype5"
 [85] "subtype3" "subtype5" "subtype3" "subtype5" "subtype1" "subtype5"
 [91] "subtype3" "subtype5" "subtype5" "subtype4" "subtype1" "subtype2"
 [97] "subtype2" "subtype5" "subtype5" "subtype2" "subtype2" "subtype7"
[103] "subtype2" "subtype4" "subtype6" "subtype6" "subtype6" "subtype6"
[109] "subtype6" "subtype5" "subtype4" "subtype1" "subtype2" "subtype7"
[115] "subtype2" "subtype4" "subtype5" "subtype5" "subtype5" "subtype5"
[121] "subtype1" "subtype1" "subtype5" "subtype7" "subtype1" "subtype1"
[127] "subtype1" "subtype5" "subtype2" "subtype6" "subtype5" "subtype4"
[133] "subtype1" "subtype3" "subtype5" "subtype5" "subtype5" "subtype2"
[139] "subtype1" "subtype5" "subtype5" "subtype1" "subtype5" "subtype1"
[145] "subtype7" "subtype7" "subtype5" "subtype1" "subtype5" "subtype4"
[151] "subtype5" "subtype3" "subtype1" "subtype5" "subtype4" "subtype7"
[157] "subtype4" "subtype3" "subtype1" "subtype2" "subtype5" "subtype7"
[163] "subtype1" "subtype2" "subtype1" "subtype6" "subtype5" "subtype5"
[169] "subtype7" "subtype5" "subtype5" "subtype3" "subtype4" "subtype5"
[175] "subtype5" "subtype2" "subtype5"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1  5 18
  subtype2  8 21
  subtype3 11  8
  subtype4 11  9
  subtype5 21 26
  subtype6 17 14
  subtype7  3  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   18
  subtype2    8   21
  subtype3   11    8
  subtype4   11    9
  subtype5   21   26
  subtype6   17   14
  subtype7    3    6
D7V4, continuous
D7V5, multiclass
D7V6, binary
          cls
clus        0  1
  subtype1  9 14
  subtype2 19 10
  subtype3 11  8
  subtype4  9 11
  subtype5 21 26
  subtype6 22  9
  subtype7  4  5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9   14
  subtype2   19   10
  subtype3   11    8
  subtype4    9   11
  subtype5   21   26
  subtype6   22    9
  subtype7    4    5

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1  6  1
  subtype2 60 34
  subtype3 62 14
subtype1 subtype2 subtype3 
       7       94       76 
subtype1 subtype2 subtype3 
       1       34       14 
$subtype1
TCGA-CS-5395 TCGA-DU-5854 TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-8187 TCGA-HT-7620 
       20.98         8.45        13.38         7.23         7.07        14.27 
TCGA-HW-7486 
       19.99 

$subtype2
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5394 
        4.70         7.69        43.89        15.81        10.62         0.10 
TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 
        9.50        17.69        23.84        17.95         8.45         7.53 
TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5279 TCGA-DB-5280 
       58.72        56.75        47.93        52.41        44.52        13.28 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5855 
       19.96        31.82        30.28        17.98         6.74         6.81 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 
      182.33        18.94        17.46        49.02        75.16        46.06 
TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6405 TCGA-DU-6406 
       65.72        87.45         7.00        11.64        19.89        16.80 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7010 
       94.52       114.05         7.69        11.47        62.96        14.99 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7290 
        6.51         8.84       117.40        90.77        30.67        10.36 
TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8165 TCGA-E1-5302 TCGA-E1-5303 
       25.91        41.98         5.10         6.05        50.14        67.43 
TCGA-E1-5304 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-FG-6690 TCGA-FG-6691 
       41.13        78.18        95.57       130.78         4.67         3.35 
TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8188 
        4.14        15.35        26.37         3.29         2.27         3.16 
TCGA-FG-8191 TCGA-FN-7833 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7472 TCGA-HT-7473 
        6.54         0.13         4.80         7.82         0.03        16.54 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
        6.38         0.43        54.05         3.98         3.09        29.82 
TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7616 TCGA-HT-7677 
      107.93        17.29        22.06        45.99         0.23        16.24 
TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7689 TCGA-HT-7691 TCGA-HT-7692 
        0.76         6.05        42.74         4.08         0.10         2.96 
TCGA-HT-7693 TCGA-HW-7490 TCGA-HW-7491 TCGA-IK-7675 
       17.52         5.42        28.08        18.97 

$subtype3
TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5397 TCGA-CS-6665 TCGA-CS-6668 TCGA-CS-6669 
       64.60        28.18         6.38        12.43         7.99         7.36 
TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5281 TCGA-DH-5143 
        6.58        97.87        46.65        50.17        53.06        14.40 
TCGA-DH-5144 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5874 TCGA-DU-6392 
        8.02        14.53        17.42        13.38        15.12       211.17 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6400 TCGA-DU-6404 TCGA-DU-6410 TCGA-DU-7008 
       40.08        22.42         1.22       133.74         7.96       156.23 
TCGA-DU-7009 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 
      138.25        26.30         7.96        94.29        18.90        43.99 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8163 
       62.01        60.30        23.31         2.76         3.98         6.48 
TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-E1-5305 TCGA-E1-5307 
        6.61         2.20         3.19         3.52        79.96        57.93 
TCGA-E1-5311 TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 
      134.27         5.26        25.87        12.39        32.19         6.21 
TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8186 
        4.08         7.66         9.30         0.89         3.45         3.98 
TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7471 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
        0.10         8.81         0.13         3.75        14.66         6.54 
TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 
       73.35        59.18       154.09        23.18         4.57         3.16 
TCGA-HT-7610 TCGA-HT-7688 TCGA-HT-7690 TCGA-HT-7694 TCGA-HT-7695 TCGA-HW-7487 
       56.09        31.69         0.10         6.90        14.53        13.45 
TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 TCGA-IK-8125 
        4.64         9.37         0.43        29.88 

subtype1 subtype2 subtype3 
    7.07     0.03     0.10 
subtype1 subtype2 subtype3 
   20.98   182.33   211.17 
subtype1 subtype2 subtype3 
  13.380   17.045   13.415 
[1] "7.1 - 21.0 (13.4)"  "0.0 - 182.3 (17.0)" "0.1 - 211.2 (13.4)"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype3"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1  2  5
  subtype2 39 55
  subtype3 35 42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    5
  subtype2   39   55
  subtype3   35   42
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2       39       35
  MALE          5       55       42
D8V4, continuous
D8V5, multiclass
D8V6, binary
          cls
clus        0  1
  subtype1  5  2
  subtype2 56 38
  subtype3 34 43
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5    2
  subtype2   56   38
  subtype3   34   43
     clus
vv    subtype1 subtype2 subtype3
  NO         5       56       34
  YES        2       38       43
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
> q(save="no")
