		Clinical Features	Time to Death		AGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		HISTOLOGICAL.TYPE		PATHOLOGY.T		PATHOLOGY.N		PATHOLOGICSPREAD(M)		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NUMBERPACKYEARSSMOKED		STOPPEDSMOKINGYEAR		TOBACCOSMOKINGHISTORYINDICATOR		YEAROFTOBACCOSMOKINGONSET	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q
1p gain	21 (6%)	304	0.8755	1	0.57439	1	0.19652	1	NA	NA	3.7874e-06	0.0041	0.067498	1	0.91462	1	0.26829	1	0.23246	1	0.52609	1	0.35275	1	0.28493	1	0.40812	1	0.40855	1
1q gain	68 (21%)	257	0.5144	1	0.63623	1	1	1	0.3579	1	0.0039509	1	0.11987	1	0.68806	1	0.29148	1	0.52933	1	1	1	0.2552	1	0.86824	1	0.82835	1	0.9029	1
2p gain	76 (23%)	249	0.51454	1	0.87499	1	0.070594	1	0.12597	1	0.010599	1	0.12476	1	0.13991	1	0.17264	1	0.10348	1	0.13737	1	0.020969	1	0.39228	1	0.72581	1	0.020079	1
2q gain	34 (10%)	291	0.16645	1	0.8856	1	1	1	0.83139	1	3.7975e-05	0.0411	0.11098	1	0.58001	1	0.22519	1	0.0039653	1	0.096271	1	0.24321	1	0.32762	1	0.97929	1	0.64076	1
3p gain	35 (11%)	290	0.39284	1	0.13731	1	0.14937	1	0.19686	1	0.97797	1	0.056409	1	0.87066	1	0.50698	1	0.51092	1	1	1	0.35598	1	0.25557	1	0.1133	1	0.056065	1
3q gain	146 (45%)	179	0.78438	1	0.19069	1	1	1	0.12702	1	0.34998	1	0.48552	1	0.89956	1	0.43606	1	0.70824	1	1	1	0.73614	1	0.83808	1	0.062279	1	0.015429	1
4p gain	13 (4%)	312	0.6621	1	0.58782	1	0.044538	1	0.7119	1	0.72043	1	0.06946	1	0.92386	1	0.45547	1	0.81958	1	1	1	0.30333	1	0.5898	1	0.77999	1	0.40403	1
4q gain	5 (2%)	320	0.55785	1	0.51152	1	0.33411	1	NA	NA	0.10297	1	0.032393	1	0.78853	1	1	1	0.11275	1	1	1	0.094771	1	NA	NA	0.34303	1	NA	NA
5p gain	147 (45%)	178	0.537	1	0.081915	1	0.52611	1	0.66304	1	0.3052	1	0.0487	1	0.44289	1	0.52528	1	0.61129	1	1	1	0.48071	1	0.53991	1	0.05925	1	0.9429	1
5q gain	33 (10%)	292	0.80976	1	0.3956	1	0.83402	1	0.4533	1	0.97635	1	0.94158	1	0.39219	1	0.48235	1	0.37395	1	0.30928	1	0.75173	1	0.77702	1	0.29585	1	0.49884	1
6p gain	30 (9%)	295	0.75549	1	0.34301	1	0.82955	1	0.28646	1	0.029537	1	0.11762	1	0.91513	1	0.45152	1	0.17836	1	0.26935	1	0.27922	1	0.15006	1	0.78671	1	0.01309	1
6q gain	17 (5%)	308	0.77924	1	0.45487	1	1	1	0.4632	1	0.00092943	1	0.6113	1	0.74027	1	0.73527	1	1	1	0.45148	1	0.1644	1	0.73317	1	0.86956	1	0.1894	1
7p gain	88 (27%)	237	0.2301	1	0.24997	1	0.56732	1	0.46537	1	0.73611	1	0.0094464	1	0.78324	1	0.31911	1	0.58337	1	0.7335	1	0.072466	1	0.25349	1	0.70831	1	0.50307	1
7q gain	83 (26%)	242	0.40115	1	0.41376	1	0.38454	1	0.23235	1	0.45709	1	0.011219	1	0.69975	1	0.12553	1	0.30405	1	0.73564	1	0.80901	1	0.037238	1	0.85187	1	0.56622	1
8p gain	45 (14%)	280	0.88458	1	0.4408	1	0.85491	1	0.0063787	1	0.095864	1	0.55007	1	0.7133	1	0.070551	1	0.24139	1	0.18421	1	0.8982	1	0.85533	1	0.66662	1	0.50183	1
8q gain	91 (28%)	234	0.26171	1	0.60817	1	0.57304	1	0.29548	1	0.88173	1	0.1624	1	0.74431	1	0.064215	1	0.061681	1	0.18993	1	0.22961	1	0.86008	1	0.23486	1	0.50285	1
9p gain	19 (6%)	306	0.21401	1	0.71987	1	0.27852	1	NA	NA	0.0012662	1	0.5323	1	0.70424	1	1	1	0.79464	1	1	1	0.92763	1	0.20525	1	0.87895	1	0.88244	1
9q gain	28 (9%)	297	0.19752	1	0.40237	1	0.65706	1	0.53685	1	0.42307	1	0.38242	1	0.83704	1	0.17711	1	0.72485	1	0.60809	1	0.66642	1	0.89228	1	0.61921	1	0.73955	1
10p gain	16 (5%)	309	0.80174	1	0.774	1	0.76944	1	0.93626	1	0.97008	1	0.68058	1	0.077132	1	0.21185	1	0.031184	1	0.43123	1	0.17869	1	0.97511	1	0.27051	1	0.327	1
10q gain	6 (2%)	319	0.35449	1	0.73352	1	1	1	NA	NA	0.99559	1	0.48074	1	0.45189	1	1	1	0.52026	1	0.18798	1	0.58154	1	0.45897	1	0.11153	1	0.77094	1
11p gain	19 (6%)	306	0.95357	1	0.42608	1	0.42168	1	1.9981e-06	0.00217	0.95844	1	0.010097	1	0.36259	1	1	1	0.64061	1	0.49002	1	0.1481	1	0.8725	1	0.85116	1	0.54105	1
11q gain	22 (7%)	303	0.73497	1	0.58836	1	0.21634	1	0.52069	1	0.93166	1	0.051249	1	0.21679	1	0.77612	1	0.12298	1	0.54323	1	0.56156	1	0.8222	1	0.47827	1	0.98652	1
12p gain	91 (28%)	234	0.80834	1	0.86391	1	0.0043487	1	0.26828	1	0.88173	1	0.12594	1	0.83541	1	0.86169	1	0.93285	1	0.50878	1	0.97882	1	0.52461	1	0.45952	1	0.34187	1
12q gain	40 (12%)	285	0.64531	1	0.72374	1	0.05193	1	0.85936	1	0.97836	1	0.15109	1	0.1638	1	0.3531	1	0.29076	1	1	1	0.63583	1	0.71491	1	0.15197	1	0.80874	1
13q gain	7 (2%)	318	0.11671	1	0.94415	1	0.6829	1	NA	NA	0.99402	1	0.12616	1	1	1	0.21001	1	0.63726	1	1	1	0.29281	1	0.84301	1	0.053627	1	0.79767	1
14q gain	31 (10%)	294	0.068263	1	0.0833	1	0.51816	1	0.85798	1	0.97358	1	0.27266	1	0.62948	1	0.55198	1	0.90018	1	1	1	0.60846	1	0.25147	1	0.3581	1	0.65739	1
15q gain	29 (9%)	296	0.68746	1	0.99328	1	1	1	0.38928	1	0.45293	1	0.7327	1	0.3348	1	1	1	0.64391	1	1	1	0.51118	1	0.4412	1	0.012566	1	0.46272	1
16p gain	14 (4%)	311	0.20455	1	0.20445	1	0.53131	1	0.068098	1	0.7632	1	0.024543	1	0.53276	1	1	1	0.44304	1	1	1	0.80567	1	0.68773	1	0.53647	1	0.12113	1
16q gain	18 (6%)	307	0.61188	1	0.060721	1	0.17592	1	0.36575	1	0.96251	1	0.0061514	1	0.18804	1	0.27108	1	0.093015	1	1	1	0.94034	1	0.17387	1	0.97765	1	0.01249	1
17p gain	9 (3%)	316	0.34613	1	0.83903	1	0.11844	1	NA	NA	3.7919e-07	0.000412	0.55011	1	0.41862	1	0.29362	1	0.095	1	1	1	0.9482	1	0.58103	1	0.14258	1	0.02319	1
17q gain	34 (10%)	291	0.54791	1	0.31563	1	0.060866	1	0.27124	1	0.58628	1	0.52	1	0.035844	1	0.19847	1	0.082327	1	0.32259	1	0.77709	1	0.4013	1	0.6812	1	0.055767	1
18p gain	51 (16%)	274	0.18319	1	0.13027	1	0.22006	1	0.32139	1	0.83713	1	0.12345	1	0.019572	1	0.097046	1	0.17913	1	0.68531	1	0.34396	1	0.49823	1	0.19121	1	0.63613	1
18q gain	37 (11%)	288	0.42093	1	0.378	1	0.55029	1	0.56696	1	0.65211	1	0.20855	1	0.099451	1	0.31581	1	0.78983	1	0.36235	1	0.084661	1	0.69149	1	0.646	1	0.20512	1
19p gain	33 (10%)	292	0.43778	1	0.22697	1	0.67541	1	1.7696e-06	0.00192	5.6313e-06	0.00609	0.63371	1	0.37765	1	0.56639	1	0.63024	1	0.30928	1	0.59171	1	0.95401	1	0.65633	1	0.83014	1
19q gain	46 (14%)	279	0.66717	1	0.82024	1	1	1	0.13881	1	0.00056485	0.608	0.85435	1	0.11229	1	0.07475	1	0.05744	1	0.65887	1	0.87866	1	0.74163	1	0.86315	1	0.16175	1
20p gain	91 (28%)	234	0.76505	1	0.063715	1	0.02305	1	0.27865	1	0.17288	1	0.94187	1	0.62227	1	0.040791	1	0.1525	1	0.18993	1	0.74053	1	0.68349	1	0.77885	1	0.19833	1
20q gain	80 (25%)	245	0.65949	1	0.26554	1	0.13933	1	0.76985	1	0.015947	1	0.96998	1	0.50068	1	0.080523	1	0.12965	1	0.14701	1	0.65813	1	0.51621	1	0.79807	1	0.63198	1
21q gain	18 (6%)	307	0.26823	1	0.68199	1	1	1	0.94869	1	5.9588e-05	0.0644	0.23861	1	0.24863	1	0.72039	1	0.19145	1	0.47107	1	0.86516	1	0.51501	1	0.48784	1	0.63058	1
22q gain	77 (24%)	248	0.082608	1	0.36096	1	0.45838	1	0.7815	1	0.90583	1	0.20393	1	0.53007	1	1	1	0.11297	1	0.72613	1	0.93833	1	0.086884	1	0.32832	1	0.60437	1
Xq gain	9 (3%)	316	0.88142	1	0.28663	1	1	1	0.89065	1	0.99021	1	0.48348	1	0.8905	1	0.64229	1	0.6945	1	1	1	0.56306	1	0.75301	1	1	1	0.96441	1
1p loss	48 (15%)	277	0.56611	1	0.76407	1	0.0020956	1	0.44976	1	0.11916	1	0.53666	1	0.49552	1	0.12104	1	0.25787	1	0.21172	1	0.5193	1	0.76028	1	0.51108	1	0.57226	1
1q loss	10 (3%)	315	0.67862	1	0.19752	1	0.46191	1	NA	NA	0.98797	1	0.50551	1	0.90285	1	1	1	0.62782	1	0.2948	1	0.23854	1	0.54471	1	0.052492	1	0.94247	1
2q loss	9 (3%)	316	0.051391	1	0.11016	1	1	1	NA	NA	0.99021	1	0.66262	1	0.8905	1	1	1	0.76578	1	1	1	0.17613	1	0.55645	1	0.11135	1	0.73132	1
3p loss	144 (44%)	181	0.4076	1	0.20612	1	0.7984	1	0.13798	1	0.40407	1	0.94858	1	0.90804	1	0.89121	1	0.95888	1	0.5467	1	0.58279	1	0.30789	1	0.6707	1	0.65542	1
3q loss	27 (8%)	298	0.56161	1	0.25357	1	1	1	0.65012	1	0.018473	1	0.37868	1	0.11954	1	0.17711	1	0.17676	1	0.60897	1	0.08449	1	0.20429	1	0.97227	1	0.13653	1
4p loss	137 (42%)	188	0.11334	1	0.79408	1	1	1	0.27093	1	0.40554	1	0.3615	1	0.30972	1	0.26427	1	0.052586	1	1	1	0.51173	1	0.96193	1	0.92574	1	0.20213	1
4q loss	118 (36%)	207	0.079679	1	0.56641	1	0.14555	1	0.13836	1	0.2352	1	0.48328	1	0.84553	1	0.33992	1	0.20944	1	0.5362	1	0.5137	1	0.60053	1	0.68505	1	0.52218	1
5p loss	23 (7%)	302	0.065922	1	0.28456	1	0.46096	1	0.49071	1	0.0078923	1	0.26388	1	0.31318	1	0.35809	1	0.70008	1	0.17842	1	0.85807	1	0.29539	1	0.67454	1	0.17408	1
5q loss	121 (37%)	204	0.12835	1	0.76584	1	0.51111	1	0.68351	1	0.23544	1	0.031684	1	0.37108	1	0.20414	1	0.022186	1	0.54575	1	0.49072	1	0.70814	1	0.35408	1	0.012715	1
6p loss	35 (11%)	290	0.56248	1	0.4163	1	0.14937	1	0.81777	1	0.027042	1	0.03251	1	0.24509	1	0.84845	1	0.043081	1	0.61551	1	0.71178	1	0.99395	1	0.77129	1	0.90263	1
6q loss	38 (12%)	287	0.99136	1	0.5814	1	1	1	0.78876	1	0.042996	1	0.04452	1	0.22571	1	0.86208	1	0.10401	1	0.37446	1	0.25715	1	0.56382	1	0.57423	1	0.17468	1
7p loss	19 (6%)	306	0.74531	1	0.54153	1	0.79022	1	0.79553	1	0.95844	1	0.31217	1	0.1771	1	1	1	0.52779	1	0.49002	1	0.10128	1	0.019144	1	0.5322	1	0.36582	1
7q loss	11 (3%)	314	0.64914	1	0.97315	1	0.73564	1	NA	NA	0.98551	1	0.084621	1	0.46406	1	0.65383	1	0.65312	1	0.31942	1	0.12229	1	0.89299	1	0.36148	1	0.59585	1
8p loss	99 (30%)	226	0.74254	1	0.14215	1	0.58187	1	0.51878	1	0.85415	1	0.18169	1	0.68733	1	0.34594	1	0.601	1	0.1829	1	0.085435	1	0.075909	1	0.071061	1	0.342	1
8q loss	11 (3%)	314	0.4933	1	0.70558	1	0.30109	1	0.4632	1	0.61072	1	0.64079	1	1	1	0.65988	1	0.9277	1	1	1	0.44015	1	0.15812	1	0.3806	1	0.35046	1
9p loss	134 (41%)	191	0.76312	1	0.37414	1	0.43979	1	0.30009	1	0.40391	1	0.85387	1	0.48246	1	0.65367	1	0.75229	1	0.76567	1	0.10762	1	0.77556	1	0.7356	1	0.31208	1
9q loss	84 (26%)	241	0.92757	1	0.0044207	1	0.77174	1	0.76794	1	0.15997	1	0.20415	1	0.71254	1	0.1726	1	0.71694	1	1	1	0.66297	1	0.92045	1	0.60891	1	0.071432	1
10p loss	72 (22%)	253	0.38992	1	0.62191	1	0.22065	1	0.96319	1	0.37176	1	0.84491	1	0.30133	1	0.37282	1	0.32616	1	0.13126	1	0.91785	1	0.032783	1	0.47991	1	0.55314	1
10q loss	71 (22%)	254	0.34056	1	0.96921	1	0.87773	1	0.83239	1	0.35806	1	0.98992	1	0.84462	1	0.1941	1	0.3183	1	0.13031	1	0.18235	1	0.056758	1	0.78063	1	0.079236	1
11p loss	51 (16%)	274	0.30893	1	0.73248	1	0.60024	1	0.71223	1	0.21782	1	0.5347	1	0.27052	1	0.24687	1	0.70944	1	0.38843	1	0.47498	1	0.84692	1	0.4872	1	0.75467	1
11q loss	32 (10%)	293	0.66319	1	0.033787	1	0.40214	1	0.96339	1	0.88999	1	0.69293	1	0.10631	1	1	1	0.50905	1	0.29596	1	0.8636	1	0.6387	1	0.40619	1	0.7918	1
12p loss	5 (2%)	320	0.5049	1	0.0021638	1	0.60509	1	NA	NA	3.6298e-13	3.95e-10	0.18507	1	0.78853	1	0.43294	1	0.31617	1	1	1	0.22951	1	0.91634	1	0.37826	1	0.2729	1
12q loss	4 (1%)	321	0.8638	1	0.18489	1	0.27022	1	NA	NA	1.3235e-16	1.44e-13	0.18507	1	0.54253	1	0.36433	1	0.34958	1	1	1	NA	NA	NA	NA	0.19538	1	0.32651	1
13q loss	124 (38%)	201	0.011015	1	0.52884	1	0.60078	1	0.074447	1	0.33211	1	0.93463	1	0.16625	1	0.39996	1	0.027516	1	0.75392	1	0.78627	1	0.046033	1	0.19371	1	0.013821	1
14q loss	60 (18%)	265	0.19503	1	0.21097	1	0.071892	1	0.22732	1	0.16672	1	0.019306	1	0.1586	1	0.43348	1	0.43434	1	0.43265	1	0.75832	1	0.89874	1	0.42701	1	0.19035	1
15q loss	39 (12%)	286	0.69587	1	0.49541	1	0.076089	1	0.7341	1	0.073036	1	0.051766	1	0.036908	1	0.47175	1	0.010283	1	1	1	0.34148	1	0.19789	1	0.16431	1	0.95894	1
16p loss	49 (15%)	276	0.18803	1	0.75422	1	0.86	1	0.4533	1	0.76667	1	0.73756	1	0.61094	1	0.79291	1	0.95614	1	1	1	0.31258	1	0.63858	1	0.90073	1	0.68431	1
16q loss	60 (18%)	265	0.1332	1	0.16365	1	0.14074	1	1.7696e-06	0.00192	0.67422	1	0.79999	1	0.4344	1	0.13793	1	0.79193	1	0.43265	1	0.075458	1	0.73946	1	0.29919	1	0.58968	1
17p loss	117 (36%)	208	0.25542	1	0.77332	1	0.42839	1	0.02494	1	0.54985	1	0.41053	1	0.17365	1	0.36169	1	0.90739	1	0.53334	1	0.39234	1	0.031402	1	0.27887	1	0.65407	1
17q loss	21 (6%)	304	0.48	1	0.9248	1	0.071365	1	0.4533	1	0.94975	1	0.50006	1	0.73436	1	0.14281	1	0.2544	1	0.52609	1	0.2436	1	0.86757	1	0.69095	1	0.20568	1
18p loss	35 (11%)	290	0.52614	1	0.65093	1	0.83833	1	0.99688	1	0.8706	1	0.96631	1	0.25063	1	0.162	1	0.27549	1	0.61551	1	0.064405	1	0.78012	1	0.82203	1	0.23506	1
18q loss	65 (20%)	260	0.57367	1	0.087558	1	0.27091	1	0.76794	1	0.32594	1	0.46794	1	0.90684	1	0.23711	1	0.90807	1	0.70008	1	0.13624	1	0.27599	1	0.35368	1	0.29352	1
19p loss	53 (16%)	272	0.071551	1	0.81827	1	0.86445	1	0.11795	1	0.14154	1	0.37738	1	0.095426	1	0.15805	1	0.17246	1	0.020384	1	0.96074	1	0.97513	1	0.14592	1	0.11078	1
19q loss	36 (11%)	289	0.57155	1	0.19745	1	0.83945	1	0.25981	1	0.0018669	1	0.56603	1	0.24846	1	0.59507	1	0.88237	1	0.11049	1	0.1564	1	0.79418	1	0.26137	1	0.034969	1
20p loss	16 (5%)	309	0.060001	1	0.86781	1	1	1	NA	NA	0.97008	1	0.38678	1	0.52409	1	0.72039	1	0.066268	1	1	1	0.90946	1	0.0366	1	0.79526	1	0.70501	1
20q loss	17 (5%)	308	0.37598	1	0.90724	1	0.57516	1	NA	NA	0.9664	1	0.94495	1	0.40629	1	0.73527	1	0.83891	1	1	1	0.11962	1	0.90612	1	0.89003	1	0.17754	1
21q loss	100 (31%)	225	0.39986	1	0.37259	1	0.019356	1	0.86205	1	0.53225	1	0.35916	1	0.69822	1	0.29338	1	0.13463	1	0.74253	1	0.20408	1	0.12448	1	0.86869	1	0.29964	1
22q loss	33 (10%)	292	0.64801	1	0.12607	1	0.060463	1	0.32705	1	0.0011915	1	0.23478	1	0.0004219	0.455	0.28196	1	0.0029199	1	1	1	0.71452	1	0.067564	1	0.40233	1	0.083572	1
Xq loss	13 (4%)	312	0.8842	1	0.28373	1	0.32904	1	0.94869	1	6.6256e-05	0.0715	0.72876	1	0.15019	1	1	1	0.44914	1	1	1	0.68143	1	0.84149	1	1	1	0.78798	1
