
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286700/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/READ-TP/2173615/1.GDAC_clinicalDataPicker.Finished/READ-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=READ-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=READ-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=168, in cluster file=162, common to both=162
[1]  62 162
[1] "Amp Peak  1(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           48                           114 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           48                           114 
[1] "Amp Peak  2(1q32.2) mutation analysis"
[1] 3
  AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE 
                           48                           114 
  AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE 
                           48                           114 
[1] "Amp Peak  3(5q22.3) mutation analysis"
[1] 3
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                           19                           143 
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                           19                           143 
[1] "Amp Peak  4(6p21.1) mutation analysis"
[1] 3
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           52                           110 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           52                           110 
[1] "Amp Peak  5(8p11.23) mutation analysis"
[1] 3
  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                            52                            110 
  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                            52                            110 
[1] "Amp Peak  6(8p11.21) mutation analysis"
[1] 3
  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                            69                             93 
  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                            69                             93 
[1] "Amp Peak  7(8q24.21) mutation analysis"
[1] 3
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                           107                             55 
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                           107                             55 
[1] "Amp Peak  8(10q22.2) mutation analysis"
[1] 3
  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                            11                            151 
  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                            11                            151 
[1] "Amp Peak  9(11p15.5) mutation analysis"
[1] 3
  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                            43                            119 
  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                            43                            119 
[1] "Amp Peak 10(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                            26                            136 
  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                            26                            136 
[1] "Amp Peak 11(12p13.33) mutation analysis"
[1] 3
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                             41                             121 
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                             41                             121 
[1] "Amp Peak 12(12p12.1) mutation analysis"
[1] 3
  AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE 
                            40                            122 
  AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE 
                            40                            122 
[1] "Amp Peak 13(13q12.13) mutation analysis"
[1] 3
  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                            121                              41 
  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                            121                              41 
[1] "Amp Peak 14(13q12.2) mutation analysis"
[1] 3
  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                           120                             42 
  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                           120                             42 
[1] "Amp Peak 15(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                           117                             45 
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                           117                             45 
[1] "Amp Peak 16(15q26.1) mutation analysis"
[1] 3
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                            15                            147 
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                            15                            147 
[1] "Amp Peak 17(16p11.2) mutation analysis"
[1] 3
  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                            45                            117 
  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                            45                            117 
[1] "Amp Peak 18(17q12) mutation analysis"
[1] 3
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                          43                          119 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                          43                          119 
[1] "Amp Peak 19(17q24.1) mutation analysis"
[1] 3
  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                            37                            125 
  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                            37                            125 
[1] "Amp Peak 20(19p13.2) mutation analysis"
[1] 3
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            32                            130 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            32                            130 
[1] "Amp Peak 21(20q11.21) mutation analysis"
[1] 3
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                            143                              19 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                            143                              19 
[1] "Amp Peak 22(20q11.23) mutation analysis"
[1] 3
  AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE 
                            144                              18 
  AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE 
                            144                              18 
[1] "Amp Peak 23(20q13.31) mutation analysis"
[1] 3
  AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE 
                            145                              17 
  AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE 
                            145                              17 
[1] "Amp Peak 24(Xp22.2) mutation analysis"
[1] 3
  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                           33                           129 
  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                           33                           129 
[1] "Amp Peak 25(Xq27.3) mutation analysis"
[1] 3
  AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE 
                           38                           124 
  AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE 
                           38                           124 
[1] "Del Peak  1(1p36.11) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            71                             91 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            71                             91 
[1] "Del Peak  2(1p33) mutation analysis"
[1] 3
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                         49                         113 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                         49                         113 
[1] "Del Peak  3(1p13.2) mutation analysis"
[1] 3
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                           51                           111 
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                           51                           111 
[1] "Del Peak  4(2p12) mutation analysis"
[1] 3
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         17                         145 
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         17                         145 
[1] "Del Peak  5(3p14.2) mutation analysis"
[1] 3
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                           29                           133 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                           29                           133 
[1] "Del Peak  6(3q26.31) mutation analysis"
[1] 3
  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                            17                            145 
  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                            17                            145 
[1] "Del Peak  7(4p13) mutation analysis"
[1] 3
  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                         58                         104 
  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                         58                         104 
[1] "Del Peak  8(4q22.1) mutation analysis"
[1] 3
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                           72                            90 
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                           72                            90 
[1] "Del Peak  9(4q35.1) mutation analysis"
[1] 3
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           72                            90 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           72                            90 
[1] "Del Peak 10(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           49                           113 
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           49                           113 
[1] "Del Peak 11(5q22.2) mutation analysis"
[1] 3
  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                           55                           107 
  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                           55                           107 
[1] "Del Peak 12(6p25.3) mutation analysis"
[1] 3
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           24                           138 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           24                           138 
[1] "Del Peak 13(6q26) mutation analysis"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         30                         132 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         30                         132 
[1] "Del Peak 14(7q31.1) mutation analysis"
[1] 3
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            4                           158 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            4                           158 
[1] "Del Peak 15(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          100                            62 
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          100                            62 
[1] "Del Peak 16(8p11.21) mutation analysis"
[1] 3
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                            24                            138 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                            24                            138 
[1] "Del Peak 17(10q21.1) mutation analysis"
[1] 3
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                            37                            125 
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                            37                            125 
[1] "Del Peak 18(10q25.2) mutation analysis"
[1] 3
  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                            47                            115 
  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                            47                            115 
[1] "Del Peak 19(11q22.3) mutation analysis"
[1] 3
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                            37                            125 
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                            37                            125 
[1] "Del Peak 20(12p13.1) mutation analysis"
[1] 3
  DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE 
                            33                            129 
  DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE 
                            33                            129 
[1] "Del Peak 21(12q21.33) mutation analysis"
[1] 3
  DEL PEAK 21(12Q21.33) MUTATED DEL PEAK 21(12Q21.33) WILD-TYPE 
                             28                             134 
  DEL PEAK 21(12Q21.33) MUTATED DEL PEAK 21(12Q21.33) WILD-TYPE 
                             28                             134 
[1] "Del Peak 22(14q11.2) mutation analysis"
[1] 3
  DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE 
                            67                             95 
  DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE 
                            67                             95 
[1] "Del Peak 23(14q31.1) mutation analysis"
[1] 3
  DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE 
                            69                             93 
  DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE 
                            69                             93 
[1] "Del Peak 24(15q22.33) mutation analysis"
[1] 3
  DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE 
                             75                              87 
  DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE 
                             75                              87 
[1] "Del Peak 25(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            13                            149 
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            13                            149 
[1] "Del Peak 26(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            23                            139 
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            23                            139 
[1] "Del Peak 27(17p12) mutation analysis"
[1] 3
  DEL PEAK 27(17P12) MUTATED DEL PEAK 27(17P12) WILD-TYPE 
                         110                           52 
  DEL PEAK 27(17P12) MUTATED DEL PEAK 27(17P12) WILD-TYPE 
                         110                           52 
[1] "Del Peak 28(17p11.2) mutation analysis"
[1] 3
  DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE 
                           102                             60 
  DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE 
                           102                             60 
[1] "Del Peak 29(17q25.3) mutation analysis"
[1] 3
  DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE 
                            24                            138 
  DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE 
                            24                            138 
[1] "Del Peak 30(18q21.2) mutation analysis"
[1] 3
  DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE 
                           143                             19 
  DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE 
                           143                             19 
[1] "Del Peak 31(18q22.1) mutation analysis"
[1] 3
  DEL PEAK 31(18Q22.1) MUTATED DEL PEAK 31(18Q22.1) WILD-TYPE 
                           138                             24 
  DEL PEAK 31(18Q22.1) MUTATED DEL PEAK 31(18Q22.1) WILD-TYPE 
                           138                             24 
[1] "Del Peak 32(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                            38                            124 
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                            38                            124 
[1] "Del Peak 33(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE 
                            60                            102 
  DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE 
                            60                            102 
[1] "Del Peak 34(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE 
                            60                            102 
  DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE 
                            60                            102 
[1] "Del Peak 35(21q11.2) mutation analysis"
[1] 3
  DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE 
                            70                             92 
  DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE 
                            70                             92 
[1] "Del Peak 36(22q13.31) mutation analysis"
[1] 3
  DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE 
                             66                              96 
  DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE 
                             66                              96 
[1] "Del Peak 37(Xp22.33) mutation analysis"
[1] 3
  DEL PEAK 37(XP22.33) MUTATED DEL PEAK 37(XP22.33) WILD-TYPE 
                            33                            129 
  DEL PEAK 37(XP22.33) MUTATED DEL PEAK 37(XP22.33) WILD-TYPE 
                            33                            129 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "TUMORSTAGE"                            
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 162 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
         594          482          358          323          412          581 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
         387          536          316          441          257          231 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3574 TCGA-AG-3575 TCGA-AG-3578 TCGA-AG-3580 
         193          223           NA           NA           NA           NA 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3584 TCGA-AG-3586 TCGA-AG-3587 
          31           31           61           NA           NA           31 
TCGA-AG-3591 TCGA-AG-3592 TCGA-AG-3593 TCGA-AG-3594 TCGA-AG-3598 TCGA-AG-3599 
          NA           NA           NA           NA           NA           30 
TCGA-AG-3600 TCGA-AG-3601 TCGA-AG-3602 TCGA-AG-3605 TCGA-AG-3608 TCGA-AG-3609 
          NA           NA           NA           NA           NA           NA 
TCGA-AG-3611 TCGA-AG-3612 TCGA-AG-3725 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3728 
          NA           NA           NA           31           29           NA 
TCGA-AG-3731 TCGA-AG-3732 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3881 TCGA-AG-3882 
          31           NA           30           30           NA           NA 
TCGA-AG-3883 TCGA-AG-3885 TCGA-AG-3887 TCGA-AG-3890 TCGA-AG-3892 TCGA-AG-3893 
          NA           NA           28           NA           31           30 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3898 TCGA-AG-3901 TCGA-AG-3902 TCGA-AG-3909 
          30           NA           NA           NA           NA           NA 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4005 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4015 
          31           31           NA           31           31           NA 
TCGA-AG-4021 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
          NA           30          637          423          183          789 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
         700          518          484          396           31           31 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
         365          365         2130         1946          334         1581 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
        1519           59         1184         1884         1246         1156 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
          15           44           21           22          140           55 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6621 TCGA-CI-6622 TCGA-CI-6623 
         310          183          183           NA          211          285 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
         143          425         1825          243          334          335 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
         304          153          273          224          212          849 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
         212          608          180          121          152            8 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
        3635         1257         1741         3683          734         1566 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 
         991           15           73          232            5           66 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
         250           14          121           20          210          216 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
         187          108          121           83          159          237 
TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6464 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
          84           62           NA          103           26           66 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
          12           31           20           21           16           33 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
          23           14           NA         1451           NA          636 
Variable 1:'AGE':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=95,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=43,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "HISTOLOGICAL.TYPE"                     
[4] "PATHOLOGY.T"                           
[5] "PATHOLOGY.N"                           
[6] "PATHOLOGICSPREAD(M)"                   
[7] "TUMOR.STAGE"                           
[8] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
30 50 50 25 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 162 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=47, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=2, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
  9  29 109  14 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
  9  29 109  14 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
  9  29 109  14 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
  9  29 109  14 
PATHOLOGY.N, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 
83 45 32 
[1] "table(vv)"
vv
N0 N1 N2 
83 45 32 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 
83 45 32 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


N0 N1 N2 
83 45 32 
PATHOLOGICSPREAD(M), nv=4, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 30  50  50  25 
[1] "table(vv)"
vv
  I  II III  IV 
 30  50  50  25 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 30  50  50  25 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 30  50  50  25 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q21.3) mutation analysis
D1V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-G5-6641 
  "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-G5-6641 
  "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-G5-6641 
  "AMP PEAK  1(1Q21.3) MUTATED" 
[1] "hr=" "1.5"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED     27   21
  AMP PEAK  1(1Q21.3) WILD-TYPE   61   53
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  FEMALE                          21                            53
  MALE                            27                            61
D1V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED     41    3
  AMP PEAK  1(1Q21.3) WILD-TYPE  102   10
                                clus
vv                               AMP PEAK  1(1Q21.3) MUTATED
  RECTAL ADENOCARCINOMA                                   41
  RECTAL MUCINOUS ADENOCARCINOMA                           3
                                clus
vv                               AMP PEAK  1(1Q21.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    102
  RECTAL MUCINOUS ADENOCARCINOMA                            10
D1V5, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  T1                           3                             6
  T2                           8                            21
  T3                          28                            81
  T4                           8                             6
D1V6, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  N0                          23                            60
  N1                          11                            34
  N2                          12                            20
D1V7, multiclass
     clus
vv    AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  M0                           34                            89
  M1                            4                            18
  M1A                           1                             1
  MX                            7                             6
D1V8, multiclass
     clus
vv    AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  I                             7                            23
  II                           16                            34
  III                          16                            34
  IV                            7                            18
D1V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED      4   44
  AMP PEAK  1(1Q21.3) WILD-TYPE    2  112
     clus
vv    AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  NO                            4                             2
  YES                          44                           112

Clustering(2) Variable = Amp Peak  2(1q32.2) mutation analysis
D2V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-G5-6641 
  "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-G5-6641 
  "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-G5-6641 
  "AMP PEAK  2(1Q32.2) MUTATED" 
[1] "hr=" "3.2"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q32.2) MUTATED     26   22
  AMP PEAK  2(1Q32.2) WILD-TYPE   62   52
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  FEMALE                          22                            52
  MALE                            26                            62
D2V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q32.2) MUTATED     41    4
  AMP PEAK  2(1Q32.2) WILD-TYPE  102    9
                                clus
vv                               AMP PEAK  2(1Q32.2) MUTATED
  RECTAL ADENOCARCINOMA                                   41
  RECTAL MUCINOUS ADENOCARCINOMA                           4
                                clus
vv                               AMP PEAK  2(1Q32.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    102
  RECTAL MUCINOUS ADENOCARCINOMA                             9
D2V5, multiclass
    clus
vv   AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  T1                           3                             6
  T2                           8                            21
  T3                          27                            82
  T4                           9                             5
D2V6, multiclass
    clus
vv   AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  N0                          21                            62
  N1                          12                            33
  N2                          13                            19
D2V7, multiclass
     clus
vv    AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  M0                           33                            90
  M1                            6                            16
  M1A                           1                             1
  MX                            6                             7
D2V8, multiclass
     clus
vv    AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  I                             6                            24
  II                           15                            35
  III                          15                            35
  IV                            9                            16
D2V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q32.2) MUTATED      3   45
  AMP PEAK  2(1Q32.2) WILD-TYPE    3  111
     clus
vv    AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  NO                            3                             3
  YES                          45                           111

Clustering(3) Variable = Amp Peak  3(5q22.3) mutation analysis
D3V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK  3(5Q22.3) MUTATED"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK  3(5Q22.3) MUTATED"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK  3(5Q22.3) MUTATED"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK  3(5Q22.3) WILD-TYPE" 
[1] "hr="     "2.8e+07"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(5Q22.3) MUTATED     11    8
  AMP PEAK  3(5Q22.3) WILD-TYPE   77   66
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  FEMALE                           8                            66
  MALE                            11                            77
D3V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(5Q22.3) MUTATED     19    0
  AMP PEAK  3(5Q22.3) WILD-TYPE  124   13
                                clus
vv                               AMP PEAK  3(5Q22.3) MUTATED
  RECTAL ADENOCARCINOMA                                   19
  RECTAL MUCINOUS ADENOCARCINOMA                           0
                                clus
vv                               AMP PEAK  3(5Q22.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    124
  RECTAL MUCINOUS ADENOCARCINOMA                            13
D3V5, multiclass
    clus
vv   AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  T1                           0                             9
  T2                           4                            25
  T3                          14                            95
  T4                           1                            13
D3V6, multiclass
    clus
vv   AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  N0                           8                            75
  N1                           6                            39
  N2                           4                            28
D3V7, multiclass
     clus
vv    AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  M0                           14                           109
  M1                            4                            18
  M1A                           0                             2
  MX                            1                            12
D3V8, multiclass
     clus
vv    AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  I                             2                            28
  II                            5                            45
  III                           7                            43
  IV                            3                            22
D3V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(5Q22.3) MUTATED      0   19
  AMP PEAK  3(5Q22.3) WILD-TYPE    6  137
     clus
vv    AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  NO                            0                             6
  YES                          19                           137

Clustering(4) Variable = Amp Peak  4(6p21.1) mutation analysis
D4V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6641 
  "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6641 
  "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6641 
  "AMP PEAK  4(6P21.1) MUTATED" 
[1] "hr=" "2.3"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) MUTATED     31   21
  AMP PEAK  4(6P21.1) WILD-TYPE   57   53
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  FEMALE                          21                            53
  MALE                            31                            57
D4V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) MUTATED     49    1
  AMP PEAK  4(6P21.1) WILD-TYPE   94   12
                                clus
vv                               AMP PEAK  4(6P21.1) MUTATED
  RECTAL ADENOCARCINOMA                                   49
  RECTAL MUCINOUS ADENOCARCINOMA                           1
                                clus
vv                               AMP PEAK  4(6P21.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     94
  RECTAL MUCINOUS ADENOCARCINOMA                            12
D4V5, multiclass
    clus
vv   AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  T1                           4                             5
  T2                           6                            23
  T3                          37                            72
  T4                           5                             9
D4V6, multiclass
    clus
vv   AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  N0                          18                            65
  N1                          17                            28
  N2                          16                            16
D4V7, multiclass
     clus
vv    AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  M0                           31                            92
  M1                           12                            10
  M1A                           1                             1
  MX                            7                             6
D4V8, multiclass
     clus
vv    AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  I                             8                            22
  II                           10                            40
  III                          19                            31
  IV                           13                            12
D4V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) MUTATED      4   48
  AMP PEAK  4(6P21.1) WILD-TYPE    2  108
     clus
vv    AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  NO                            4                             2
  YES                          48                           108

Clustering(5) Variable = Amp Peak  5(8p11.23) mutation analysis
D5V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-G5-6641 
"AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-G5-6641 
"AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-G5-6641 
"AMP PEAK  5(8P11.23) WILD-TYPE" 
[1] "hr=" "2.8"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(8P11.23) MUTATED     34   18
  AMP PEAK  5(8P11.23) WILD-TYPE   54   56
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  FEMALE                           18                             56
  MALE                             34                             54
D5V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(8P11.23) MUTATED     50    2
  AMP PEAK  5(8P11.23) WILD-TYPE   93   11
                                clus
vv                               AMP PEAK  5(8P11.23) MUTATED
  RECTAL ADENOCARCINOMA                                    50
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               AMP PEAK  5(8P11.23) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      93
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D5V5, multiclass
    clus
vv   AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  T1                            1                              8
  T2                            7                             22
  T3                           36                             73
  T4                            7                              7
D5V6, multiclass
    clus
vv   AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  N0                           24                             59
  N1                           13                             32
  N2                           13                             19
D5V7, multiclass
     clus
vv    AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  M0                            35                             88
  M1                            10                             12
  M1A                            1                              1
  MX                             5                              8
D5V8, multiclass
     clus
vv    AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  I                              6                             24
  II                            18                             32
  III                           14                             36
  IV                            11                             14
D5V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(8P11.23) MUTATED      2   50
  AMP PEAK  5(8P11.23) WILD-TYPE    4  106
     clus
vv    AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  NO                             2                              4
  YES                           50                            106

Clustering(6) Variable = Amp Peak  6(8p11.21) mutation analysis
D6V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-G5-6641 
  "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-G5-6641 
  "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-G5-6641 
  "AMP PEAK  6(8P11.21) MUTATED" 
[1] "hr=" "1.6"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(8P11.21) MUTATED     39   30
  AMP PEAK  6(8P11.21) WILD-TYPE   49   44
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  FEMALE                           30                             44
  MALE                             39                             49
D6V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(8P11.21) MUTATED     64    3
  AMP PEAK  6(8P11.21) WILD-TYPE   79   10
                                clus
vv                               AMP PEAK  6(8P11.21) MUTATED
  RECTAL ADENOCARCINOMA                                    64
  RECTAL MUCINOUS ADENOCARCINOMA                            3
                                clus
vv                               AMP PEAK  6(8P11.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      79
  RECTAL MUCINOUS ADENOCARCINOMA                             10
D6V5, multiclass
    clus
vv   AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  T1                            2                              7
  T2                           11                             18
  T3                           47                             62
  T4                            8                              6
D6V6, multiclass
    clus
vv   AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  N0                           34                             49
  N1                           18                             27
  N2                           15                             17
D6V7, multiclass
     clus
vv    AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  M0                            47                             76
  M1                            13                              9
  M1A                            1                              1
  MX                             7                              6
D6V8, multiclass
     clus
vv    AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  I                              8                             22
  II                            25                             25
  III                           18                             32
  IV                            14                             11
D6V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(8P11.21) MUTATED      1   68
  AMP PEAK  6(8P11.21) WILD-TYPE    5   88
     clus
vv    AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  NO                             1                              5
  YES                           68                             88

Clustering(7) Variable = Amp Peak  7(8q24.21) mutation analysis
D7V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-G5-6641 
  "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-G5-6641 
  "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-G5-6641 
  "AMP PEAK  7(8Q24.21) MUTATED" 
[1] "hr=" "1.4"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) MUTATED     59   48
  AMP PEAK  7(8Q24.21) WILD-TYPE   29   26
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  FEMALE                           48                             26
  MALE                             59                             29
D7V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) MUTATED     99    5
  AMP PEAK  7(8Q24.21) WILD-TYPE   44    8
                                clus
vv                               AMP PEAK  7(8Q24.21) MUTATED
  RECTAL ADENOCARCINOMA                                    99
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               AMP PEAK  7(8Q24.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      44
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D7V5, multiclass
    clus
vv   AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  T1                            4                              5
  T2                           18                             11
  T3                           74                             35
  T4                           10                              4
D7V6, multiclass
    clus
vv   AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  N0                           54                             29
  N1                           28                             17
  N2                           23                              9
D7V7, multiclass
     clus
vv    AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  M0                            78                             45
  M1                            17                              5
  M1A                            1                              1
  MX                             9                              4
D7V8, multiclass
     clus
vv    AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  I                             16                             14
  II                            37                             13
  III                           31                             19
  IV                            16                              9
D7V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) MUTATED      5  102
  AMP PEAK  7(8Q24.21) WILD-TYPE    1   54
     clus
vv    AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  NO                             5                              1
  YES                          102                             54

Clustering(8) Variable = Amp Peak  8(10q22.2) mutation analysis
D8V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" 
[1] "hr="     "7.7e+07"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(10Q22.2) MUTATED      5    6
  AMP PEAK  8(10Q22.2) WILD-TYPE   83   68
        clus
vv       AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  FEMALE                            6                             68
  MALE                              5                             83
D8V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(10Q22.2) MUTATED      9    1
  AMP PEAK  8(10Q22.2) WILD-TYPE  134   12
                                clus
vv                               AMP PEAK  8(10Q22.2) MUTATED
  RECTAL ADENOCARCINOMA                                     9
  RECTAL MUCINOUS ADENOCARCINOMA                            1
                                clus
vv                               AMP PEAK  8(10Q22.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     134
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D8V5, multiclass
    clus
vv   AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  T1                            0                              9
  T2                            2                             27
  T3                            9                            100
  T4                            0                             14
D8V6, multiclass
    clus
vv   AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  N0                            5                             78
  N1                            4                             41
  N2                            2                             30
D8V7, multiclass
     clus
vv    AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  M0                             8                            115
  M1                             2                             20
  M1A                            0                              2
  MX                             0                             13
D8V8, multiclass
     clus
vv    AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  I                              2                             28
  II                             3                             47
  III                            4                             46
  IV                             1                             24
D8V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(10Q22.2) MUTATED      1   10
  AMP PEAK  8(10Q22.2) WILD-TYPE    5  146
     clus
vv    AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  NO                             1                              5
  YES                           10                            146

Clustering(9) Variable = Amp Peak  9(11p15.5) mutation analysis
D9V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK  9(11P15.5) WILD-TYPE" 
[1] "hr=" "1.5"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P15.5) MUTATED     23   20
  AMP PEAK  9(11P15.5) WILD-TYPE   65   54
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  FEMALE                           20                             54
  MALE                             23                             65
D9V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P15.5) MUTATED     41    1
  AMP PEAK  9(11P15.5) WILD-TYPE  102   12
                                clus
vv                               AMP PEAK  9(11P15.5) MUTATED
  RECTAL ADENOCARCINOMA                                    41
  RECTAL MUCINOUS ADENOCARCINOMA                            1
                                clus
vv                               AMP PEAK  9(11P15.5) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     102
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D9V5, multiclass
    clus
vv   AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  T1                            3                              6
  T2                            8                             21
  T3                           28                             81
  T4                            4                             10
D9V6, multiclass
    clus
vv   AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  N0                           27                             56
  N1                            8                             37
  N2                            8                             24
D9V7, multiclass
     clus
vv    AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  M0                            34                             89
  M1                             6                             16
  M1A                            0                              2
  MX                             2                             11
D9V8, multiclass
     clus
vv    AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  I                              9                             21
  II                            17                             33
  III                            9                             41
  IV                             5                             20
D9V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P15.5) MUTATED      2   41
  AMP PEAK  9(11P15.5) WILD-TYPE    4  115
     clus
vv    AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  NO                             2                              4
  YES                           41                            115

Clustering(10) Variable = Amp Peak 10(11q13.3) mutation analysis
D10V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 10(11Q13.3) WILD-TYPE" 
[1] "hr=" "2.2"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.3) MUTATED     14   12
  AMP PEAK 10(11Q13.3) WILD-TYPE   74   62
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  FEMALE                           12                             62
  MALE                             14                             74
D10V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.3) MUTATED     25    1
  AMP PEAK 10(11Q13.3) WILD-TYPE  118   12
                                clus
vv                               AMP PEAK 10(11Q13.3) MUTATED
  RECTAL ADENOCARCINOMA                                    25
  RECTAL MUCINOUS ADENOCARCINOMA                            1
                                clus
vv                               AMP PEAK 10(11Q13.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     118
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D10V5, multiclass
    clus
vv   AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  T1                            1                              8
  T2                            7                             22
  T3                           15                             94
  T4                            3                             11
D10V6, multiclass
    clus
vv   AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  N0                           17                             66
  N1                            5                             40
  N2                            4                             28
D10V7, multiclass
     clus
vv    AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  M0                            19                            104
  M1                             5                             17
  M1A                            1                              1
  MX                             1                             12
D10V8, multiclass
     clus
vv    AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  I                              7                             23
  II                             9                             41
  III                            3                             47
  IV                             5                             20
D10V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.3) MUTATED      0   26
  AMP PEAK 10(11Q13.3) WILD-TYPE    6  130
     clus
vv    AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  NO                             0                              6
  YES                           26                            130

Clustering(11) Variable = Amp Peak 11(12p13.33) mutation analysis
D11V1, survival
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3583                      TCGA-AG-3587 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6881                      TCGA-EI-6882 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6641 
  "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3583                      TCGA-AG-3587 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6881                      TCGA-EI-6882 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6641 
  "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3583                      TCGA-AG-3587 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6881                      TCGA-EI-6882 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6641 
  "AMP PEAK 11(12P13.33) MUTATED" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(12P13.33) MUTATED     24   17
  AMP PEAK 11(12P13.33) WILD-TYPE   64   57
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  FEMALE                            17                              57
  MALE                              24                              64
D11V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(12P13.33) MUTATED     33    5
  AMP PEAK 11(12P13.33) WILD-TYPE  110    8
                                clus
vv                               AMP PEAK 11(12P13.33) MUTATED
  RECTAL ADENOCARCINOMA                                     33
  RECTAL MUCINOUS ADENOCARCINOMA                             5
                                clus
vv                               AMP PEAK 11(12P13.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      110
  RECTAL MUCINOUS ADENOCARCINOMA                               8
D11V5, multiclass
    clus
vv   AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  T1                             2                               7
  T2                            11                              18
  T3                            25                              84
  T4                             3                              11
D11V6, multiclass
    clus
vv   AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  N0                            24                              59
  N1                             9                              36
  N2                             8                              24
D11V7, multiclass
     clus
vv    AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  M0                             30                              93
  M1                              4                              18
  M1A                             0                               2
  MX                              7                               6
D11V8, multiclass
     clus
vv    AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  I                               9                              21
  II                             15                              35
  III                            10                              40
  IV                              7                              18
D11V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(12P13.33) MUTATED      3   38
  AMP PEAK 11(12P13.33) WILD-TYPE    3  118
     clus
vv    AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  NO                              3                               3
  YES                            38                             118

Clustering(12) Variable = Amp Peak 12(12p12.1) mutation analysis
D12V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "AMP PEAK 12(12P12.1) MUTATED" 
[1] "hr=" "1.3"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(12P12.1) MUTATED     23   17
  AMP PEAK 12(12P12.1) WILD-TYPE   65   57
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  FEMALE                           17                             57
  MALE                             23                             65
D12V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(12P12.1) MUTATED     32    5
  AMP PEAK 12(12P12.1) WILD-TYPE  111    8
                                clus
vv                               AMP PEAK 12(12P12.1) MUTATED
  RECTAL ADENOCARCINOMA                                    32
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               AMP PEAK 12(12P12.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     111
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D12V5, multiclass
    clus
vv   AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  T1                            2                              7
  T2                           11                             18
  T3                           24                             85
  T4                            3                             11
D12V6, multiclass
    clus
vv   AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  N0                           21                             62
  N1                            9                             36
  N2                           10                             22
D12V7, multiclass
     clus
vv    AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  M0                            27                             96
  M1                             6                             16
  M1A                            0                              2
  MX                             7                              6
D12V8, multiclass
     clus
vv    AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  I                              9                             21
  II                            12                             38
  III                           10                             40
  IV                             9                             16
D12V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(12P12.1) MUTATED      3   37
  AMP PEAK 12(12P12.1) WILD-TYPE    3  119
     clus
vv    AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  NO                             3                              3
  YES                           37                            119

Clustering(13) Variable = Amp Peak 13(13q12.13) mutation analysis
D13V1, survival
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CI-6622                      TCGA-CI-6623 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DC-6156                      TCGA-DC-6157 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6465                      TCGA-F5-6571 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-G5-6641 
  "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CI-6622                      TCGA-CI-6623 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DC-6156                      TCGA-DC-6157 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6465                      TCGA-F5-6571 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-G5-6641 
  "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CI-6622                      TCGA-CI-6623 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DC-6156                      TCGA-DC-6157 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6465                      TCGA-F5-6571 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-G5-6641 
  "AMP PEAK 13(13Q12.13) MUTATED" 
[1] "hr="     "3.1e+08"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(13Q12.13) MUTATED     67   54
  AMP PEAK 13(13Q12.13) WILD-TYPE   21   20
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  FEMALE                            54                              20
  MALE                              67                              21
D13V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(13Q12.13) MUTATED    112    5
  AMP PEAK 13(13Q12.13) WILD-TYPE   31    8
                                clus
vv                               AMP PEAK 13(13Q12.13) MUTATED
  RECTAL ADENOCARCINOMA                                    112
  RECTAL MUCINOUS ADENOCARCINOMA                             5
                                clus
vv                               AMP PEAK 13(13Q12.13) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       31
  RECTAL MUCINOUS ADENOCARCINOMA                               8
D13V5, multiclass
    clus
vv   AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  T1                             7                               2
  T2                            19                              10
  T3                            80                              29
  T4                            14                               0
D13V6, multiclass
    clus
vv   AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  N0                            54                              29
  N1                            37                               8
  N2                            28                               4
D13V7, multiclass
     clus
vv    AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  M0                             89                              34
  M1                             18                               4
  M1A                             1                               1
  MX                             12                               1
D13V8, multiclass
     clus
vv    AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  I                              21                               9
  II                             33                              17
  III                            41                               9
  IV                             20                               5
D13V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(13Q12.13) MUTATED      3  118
  AMP PEAK 13(13Q12.13) WILD-TYPE    3   38
     clus
vv    AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  NO                              3                               3
  YES                           118                              38

Clustering(14) Variable = Amp Peak 14(13q12.2) mutation analysis
D14V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-G5-6641 
  "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-G5-6641 
  "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-G5-6641 
  "AMP PEAK 14(13Q12.2) MUTATED" 
[1] "hr="     "3.1e+08"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q12.2) MUTATED     68   52
  AMP PEAK 14(13Q12.2) WILD-TYPE   20   22
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  FEMALE                           52                             22
  MALE                             68                             20
D14V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q12.2) MUTATED    111    5
  AMP PEAK 14(13Q12.2) WILD-TYPE   32    8
                                clus
vv                               AMP PEAK 14(13Q12.2) MUTATED
  RECTAL ADENOCARCINOMA                                   111
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               AMP PEAK 14(13Q12.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      32
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D14V5, multiclass
    clus
vv   AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  T1                            7                              2
  T2                           19                             10
  T3                           79                             30
  T4                           14                              0
D14V6, multiclass
    clus
vv   AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  N0                           54                             29
  N1                           36                              9
  N2                           28                              4
D14V7, multiclass
     clus
vv    AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  M0                            89                             34
  M1                            17                              5
  M1A                            1                              1
  MX                            12                              1
D14V8, multiclass
     clus
vv    AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  I                             21                              9
  II                            33                             17
  III                           41                              9
  IV                            19                              6
D14V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q12.2) MUTATED      3  117
  AMP PEAK 14(13Q12.2) WILD-TYPE    3   39
     clus
vv    AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  NO                             3                              3
  YES                          117                             39

Clustering(15) Variable = Amp Peak 15(13q22.1) mutation analysis
D15V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-G5-6641 
  "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-G5-6641 
  "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-G5-6641 
  "AMP PEAK 15(13Q22.1) MUTATED" 
[1] "hr="     "2.3e+08"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) MUTATED     66   51
  AMP PEAK 15(13Q22.1) WILD-TYPE   22   23
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  FEMALE                           51                             23
  MALE                             66                             22
D15V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) MUTATED    109    4
  AMP PEAK 15(13Q22.1) WILD-TYPE   34    9
                                clus
vv                               AMP PEAK 15(13Q22.1) MUTATED
  RECTAL ADENOCARCINOMA                                   109
  RECTAL MUCINOUS ADENOCARCINOMA                            4
                                clus
vv                               AMP PEAK 15(13Q22.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      34
  RECTAL MUCINOUS ADENOCARCINOMA                              9
D15V5, multiclass
    clus
vv   AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  T1                            7                              2
  T2                           18                             11
  T3                           78                             31
  T4                           13                              1
D15V6, multiclass
    clus
vv   AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  N0                           54                             29
  N1                           35                             10
  N2                           26                              6
D15V7, multiclass
     clus
vv    AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  M0                            87                             36
  M1                            16                              6
  M1A                            1                              1
  MX                            12                              1
D15V8, multiclass
     clus
vv    AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  I                             20                             10
  II                            34                             16
  III                           40                             10
  IV                            17                              8
D15V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) MUTATED      4  113
  AMP PEAK 15(13Q22.1) WILD-TYPE    2   43
     clus
vv    AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  NO                             4                              2
  YES                          113                             43

Clustering(16) Variable = Amp Peak 16(15q26.1) mutation analysis
D16V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 16(15Q26.1) WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) MUTATED      5   10
  AMP PEAK 16(15Q26.1) WILD-TYPE   83   64
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  FEMALE                           10                             64
  MALE                              5                             83
D16V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) MUTATED     13    2
  AMP PEAK 16(15Q26.1) WILD-TYPE  130   11
                                clus
vv                               AMP PEAK 16(15Q26.1) MUTATED
  RECTAL ADENOCARCINOMA                                    13
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               AMP PEAK 16(15Q26.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     130
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D16V5, multiclass
    clus
vv   AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  T1                            1                              8
  T2                            1                             28
  T3                           10                             99
  T4                            3                             11
D16V6, multiclass
    clus
vv   AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  N0                            7                             76
  N1                            3                             42
  N2                            5                             27
D16V7, multiclass
     clus
vv    AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  M0                            13                            110
  M1                             0                             22
  M1A                            0                              2
  MX                             1                             12
D16V8, multiclass
     clus
vv    AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  I                              2                             28
  II                             5                             45
  III                            7                             43
  IV                             1                             24
D16V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) MUTATED      2   13
  AMP PEAK 16(15Q26.1) WILD-TYPE    4  143
     clus
vv    AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  NO                             2                              4
  YES                           13                            143

Clustering(17) Variable = Amp Peak 17(16p11.2) mutation analysis
D17V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 17(16P11.2) WILD-TYPE" 
[1] "hr=" "2.3"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(16P11.2) MUTATED     25   20
  AMP PEAK 17(16P11.2) WILD-TYPE   63   54
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  FEMALE                           20                             54
  MALE                             25                             63
D17V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(16P11.2) MUTATED     45    0
  AMP PEAK 17(16P11.2) WILD-TYPE   98   13
                                clus
vv                               AMP PEAK 17(16P11.2) MUTATED
  RECTAL ADENOCARCINOMA                                    45
  RECTAL MUCINOUS ADENOCARCINOMA                            0
                                clus
vv                               AMP PEAK 17(16P11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      98
  RECTAL MUCINOUS ADENOCARCINOMA                             13
D17V5, multiclass
    clus
vv   AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  T1                            2                              7
  T2                            8                             21
  T3                           29                             80
  T4                            6                              8
D17V6, multiclass
    clus
vv   AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  N0                           18                             65
  N1                           17                             28
  N2                            9                             23
D17V7, multiclass
     clus
vv    AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  M0                            30                             93
  M1                            11                             11
  M1A                            0                              2
  MX                             4                              9
D17V8, multiclass
     clus
vv    AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  I                              7                             23
  II                            10                             40
  III                           16                             34
  IV                             9                             16
D17V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(16P11.2) MUTATED      2   43
  AMP PEAK 17(16P11.2) WILD-TYPE    4  113
     clus
vv    AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  NO                             2                              4
  YES                           43                            113

Clustering(18) Variable = Amp Peak 18(17q12) mutation analysis
D18V1, survival
                  TCGA-AF-2687                   TCGA-AF-2689 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3581                   TCGA-AG-3582 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3583                   TCGA-AG-3587 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3599                   TCGA-AG-3726 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3727                   TCGA-AG-3731 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3742                   TCGA-AG-3878 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3999                   TCGA-AG-4001 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-4007                   TCGA-AG-4008 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-4022                   TCGA-AG-A002 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A008                   TCGA-AG-A00C 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00H                   TCGA-AG-A00Y 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A011                   TCGA-AG-A014 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A015                   TCGA-AG-A016 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A01J                   TCGA-AG-A01L 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01N                   TCGA-AG-A01W 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01Y                   TCGA-AG-A020 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A023                   TCGA-AG-A025 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A026                   TCGA-AG-A02G 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02N                   TCGA-AG-A02X 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A032                   TCGA-AH-6544 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6547                   TCGA-AH-6643 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AH-6644                   TCGA-AH-6897 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AH-6903                   TCGA-BM-6198 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6619                   TCGA-CI-6620 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6622                   TCGA-CI-6623 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-CI-6624                   TCGA-CL-4957 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-5917                   TCGA-CL-5918 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-4745                   TCGA-DC-4749 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-5337                   TCGA-DC-5869 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6154                   TCGA-DC-6155 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6156                   TCGA-DC-6157 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6158                   TCGA-DC-6160 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6681                   TCGA-DC-6682 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DC-6683                   TCGA-DT-5265 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DY-A0XA                   TCGA-DY-A1DC 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DD                   TCGA-DY-A1DE 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DF                   TCGA-DY-A1DG 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DY-A1H8                   TCGA-EF-5830 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EF-5831                   TCGA-EI-6506 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6507                   TCGA-EI-6508 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6509                   TCGA-EI-6510 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EI-6511                   TCGA-EI-6512 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6513                   TCGA-EI-6514 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EI-6881                   TCGA-EI-6882 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6883                   TCGA-EI-6884 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6885                   TCGA-EI-6917 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-7002                   TCGA-EI-7004 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6465                   TCGA-F5-6571 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6702                   TCGA-F5-6810 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6811                   TCGA-F5-6812 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6813                   TCGA-F5-6814 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6861                   TCGA-F5-6863 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6864                   TCGA-G5-6233 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-G5-6235                   TCGA-G5-6572 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-G5-6641 
  "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3581                   TCGA-AG-3582 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3583                   TCGA-AG-3587 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3599                   TCGA-AG-3726 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3727                   TCGA-AG-3731 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3742                   TCGA-AG-3878 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3999                   TCGA-AG-4001 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-4007                   TCGA-AG-4008 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-4022                   TCGA-AG-A002 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A008                   TCGA-AG-A00C 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00H                   TCGA-AG-A00Y 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A011                   TCGA-AG-A014 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A015                   TCGA-AG-A016 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A01J                   TCGA-AG-A01L 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01N                   TCGA-AG-A01W 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01Y                   TCGA-AG-A020 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A023                   TCGA-AG-A025 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A026                   TCGA-AG-A02G 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02N                   TCGA-AG-A02X 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A032                   TCGA-AH-6544 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6547                   TCGA-AH-6643 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AH-6644                   TCGA-AH-6897 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AH-6903                   TCGA-BM-6198 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6619                   TCGA-CI-6620 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6622                   TCGA-CI-6623 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-CI-6624                   TCGA-CL-4957 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-5917                   TCGA-CL-5918 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-4745                   TCGA-DC-4749 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-5337                   TCGA-DC-5869 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6154                   TCGA-DC-6155 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6156                   TCGA-DC-6157 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6158                   TCGA-DC-6160 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6681                   TCGA-DC-6682 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DC-6683                   TCGA-DT-5265 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DY-A0XA                   TCGA-DY-A1DC 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DD                   TCGA-DY-A1DE 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DF                   TCGA-DY-A1DG 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DY-A1H8                   TCGA-EF-5830 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EF-5831                   TCGA-EI-6506 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6507                   TCGA-EI-6508 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6509                   TCGA-EI-6510 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EI-6511                   TCGA-EI-6512 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6513                   TCGA-EI-6514 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EI-6881                   TCGA-EI-6882 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6883                   TCGA-EI-6884 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6885                   TCGA-EI-6917 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-7002                   TCGA-EI-7004 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6465                   TCGA-F5-6571 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6702                   TCGA-F5-6810 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6811                   TCGA-F5-6812 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6813                   TCGA-F5-6814 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6861                   TCGA-F5-6863 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6864                   TCGA-G5-6233 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-G5-6235                   TCGA-G5-6572 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-G5-6641 
  "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3581                   TCGA-AG-3582 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3583                   TCGA-AG-3587 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3599                   TCGA-AG-3726 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3727                   TCGA-AG-3731 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3742                   TCGA-AG-3878 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3999                   TCGA-AG-4001 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-4007                   TCGA-AG-4008 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-4022                   TCGA-AG-A002 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A008                   TCGA-AG-A00C 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00H                   TCGA-AG-A00Y 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A011                   TCGA-AG-A014 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A015                   TCGA-AG-A016 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A01J                   TCGA-AG-A01L 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01N                   TCGA-AG-A01W 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01Y                   TCGA-AG-A020 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A023                   TCGA-AG-A025 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A026                   TCGA-AG-A02G 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02N                   TCGA-AG-A02X 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A032                   TCGA-AH-6544 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6547                   TCGA-AH-6643 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AH-6644                   TCGA-AH-6897 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AH-6903                   TCGA-BM-6198 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6619                   TCGA-CI-6620 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6622                   TCGA-CI-6623 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-CI-6624                   TCGA-CL-4957 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-5917                   TCGA-CL-5918 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-4745                   TCGA-DC-4749 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-5337                   TCGA-DC-5869 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6154                   TCGA-DC-6155 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6156                   TCGA-DC-6157 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6158                   TCGA-DC-6160 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6681                   TCGA-DC-6682 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DC-6683                   TCGA-DT-5265 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DY-A0XA                   TCGA-DY-A1DC 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DD                   TCGA-DY-A1DE 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DF                   TCGA-DY-A1DG 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DY-A1H8                   TCGA-EF-5830 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EF-5831                   TCGA-EI-6506 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6507                   TCGA-EI-6508 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6509                   TCGA-EI-6510 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EI-6511                   TCGA-EI-6512 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6513                   TCGA-EI-6514 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EI-6881                   TCGA-EI-6882 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6883                   TCGA-EI-6884 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6885                   TCGA-EI-6917 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-7002                   TCGA-EI-7004 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6465                   TCGA-F5-6571 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6702                   TCGA-F5-6810 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6811                   TCGA-F5-6812 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6813                   TCGA-F5-6814 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6861                   TCGA-F5-6863 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6864                   TCGA-G5-6233 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-G5-6235                   TCGA-G5-6572 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-G5-6641 
  "AMP PEAK 18(17Q12) MUTATED" 
[1] "hr=" "1.4"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) MUTATED     27   16
  AMP PEAK 18(17Q12) WILD-TYPE   61   58
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  FEMALE                         16                           58
  MALE                           27                           61
D18V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) MUTATED     41    2
  AMP PEAK 18(17Q12) WILD-TYPE  102   11
                                clus
vv                               AMP PEAK 18(17Q12) MUTATED
  RECTAL ADENOCARCINOMA                                  41
  RECTAL MUCINOUS ADENOCARCINOMA                          2
                                clus
vv                               AMP PEAK 18(17Q12) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   102
  RECTAL MUCINOUS ADENOCARCINOMA                           11
D18V5, multiclass
    clus
vv   AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  T1                          3                            6
  T2                          8                           21
  T3                         27                           82
  T4                          5                            9
D18V6, multiclass
    clus
vv   AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  N0                         23                           60
  N1                          9                           36
  N2                         11                           21
D18V7, multiclass
     clus
vv    AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  M0                          30                           93
  M1                           9                           13
  M1A                          0                            2
  MX                           4                            9
D18V8, multiclass
     clus
vv    AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  I                            8                           22
  II                          13                           37
  III                         11                           39
  IV                          10                           15
D18V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) MUTATED      0   43
  AMP PEAK 18(17Q12) WILD-TYPE    6  113
     clus
vv    AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  NO                           0                            6
  YES                         43                          113

Clustering(19) Variable = Amp Peak 19(17q24.1) mutation analysis
D19V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 19(17Q24.1) WILD-TYPE" 
[1] "hr=" "1.4"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q24.1) MUTATED     20   17
  AMP PEAK 19(17Q24.1) WILD-TYPE   68   57
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  FEMALE                           17                             57
  MALE                             20                             68
D19V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q24.1) MUTATED     36    0
  AMP PEAK 19(17Q24.1) WILD-TYPE  107   13
                                clus
vv                               AMP PEAK 19(17Q24.1) MUTATED
  RECTAL ADENOCARCINOMA                                    36
  RECTAL MUCINOUS ADENOCARCINOMA                            0
                                clus
vv                               AMP PEAK 19(17Q24.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     107
  RECTAL MUCINOUS ADENOCARCINOMA                             13
D19V5, multiclass
    clus
vv   AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  T1                            0                              9
  T2                            7                             22
  T3                           25                             84
  T4                            5                              9
D19V6, multiclass
    clus
vv   AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  N0                           20                             63
  N1                            7                             38
  N2                           10                             22
D19V7, multiclass
     clus
vv    AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  M0                            25                             98
  M1                             9                             13
  M1A                            0                              2
  MX                             3                             10
D19V8, multiclass
     clus
vv    AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  I                              5                             25
  II                            13                             37
  III                            8                             42
  IV                             9                             16
D19V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q24.1) MUTATED      0   37
  AMP PEAK 19(17Q24.1) WILD-TYPE    6  119
     clus
vv    AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  NO                             0                              6
  YES                           37                            119

Clustering(20) Variable = Amp Peak 20(19p13.2) mutation analysis
D20V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 20(19P13.2) WILD-TYPE" 
[1] "hr=" "3.8"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) MUTATED     16   16
  AMP PEAK 20(19P13.2) WILD-TYPE   72   58
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  FEMALE                           16                             58
  MALE                             16                             72
D20V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) MUTATED     32    0
  AMP PEAK 20(19P13.2) WILD-TYPE  111   13
                                clus
vv                               AMP PEAK 20(19P13.2) MUTATED
  RECTAL ADENOCARCINOMA                                    32
  RECTAL MUCINOUS ADENOCARCINOMA                            0
                                clus
vv                               AMP PEAK 20(19P13.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     111
  RECTAL MUCINOUS ADENOCARCINOMA                             13
D20V5, multiclass
    clus
vv   AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  T1                            0                              9
  T2                            5                             24
  T3                           22                             87
  T4                            5                              9
D20V6, multiclass
    clus
vv   AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  N0                           14                             69
  N1                           10                             35
  N2                            8                             24
D20V7, multiclass
     clus
vv    AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  M0                            25                             98
  M1                             6                             16
  M1A                            0                              2
  MX                             1                             12
D20V8, multiclass
     clus
vv    AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  I                              4                             26
  II                             9                             41
  III                           12                             38
  IV                             5                             20
D20V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) MUTATED      0   32
  AMP PEAK 20(19P13.2) WILD-TYPE    6  124
     clus
vv    AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  NO                             0                              6
  YES                           32                            124

Clustering(21) Variable = Amp Peak 21(20q11.21) mutation analysis
D21V1, survival
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3727                      TCGA-AG-3731 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A023                      TCGA-AG-A025 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6903                      TCGA-BM-6198 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6861                      TCGA-F5-6863 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-G5-6641 
  "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3727                      TCGA-AG-3731 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A023                      TCGA-AG-A025 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6903                      TCGA-BM-6198 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6861                      TCGA-F5-6863 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-G5-6641 
  "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3727                      TCGA-AG-3731 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A023                      TCGA-AG-A025 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6903                      TCGA-BM-6198 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6861                      TCGA-F5-6863 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-G5-6641 
  "AMP PEAK 21(20Q11.21) MUTATED" 
[1] "hr="     "2.2e+08"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED     78   65
  AMP PEAK 21(20Q11.21) WILD-TYPE   10    9
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  FEMALE                            65                               9
  MALE                              78                              10
D21V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED    132    7
  AMP PEAK 21(20Q11.21) WILD-TYPE   11    6
                                clus
vv                               AMP PEAK 21(20Q11.21) MUTATED
  RECTAL ADENOCARCINOMA                                    132
  RECTAL MUCINOUS ADENOCARCINOMA                             7
                                clus
vv                               AMP PEAK 21(20Q11.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       11
  RECTAL MUCINOUS ADENOCARCINOMA                               6
D21V5, multiclass
    clus
vv   AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  T1                             7                               2
  T2                            27                               2
  T3                            95                              14
  T4                            13                               1
D21V6, multiclass
    clus
vv   AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  N0                            69                              14
  N1                            43                               2
  N2                            29                               3
D21V7, multiclass
     clus
vv    AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  M0                            106                              17
  M1                             20                               2
  M1A                             2                               0
  MX                             13                               0
D21V8, multiclass
     clus
vv    AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  I                              26                               4
  II                             40                              10
  III                            48                               2
  IV                             22                               3
D21V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED      5  138
  AMP PEAK 21(20Q11.21) WILD-TYPE    1   18
     clus
vv    AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  NO                              5                               1
  YES                           138                              18

Clustering(22) Variable = Amp Peak 22(20q11.23) mutation analysis
D22V1, survival
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3727                      TCGA-AG-3731 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A023                      TCGA-AG-A025 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6903                      TCGA-BM-6198 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6622                      TCGA-CI-6623 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6861                      TCGA-F5-6863 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-G5-6641 
  "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3727                      TCGA-AG-3731 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A023                      TCGA-AG-A025 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6903                      TCGA-BM-6198 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6622                      TCGA-CI-6623 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6861                      TCGA-F5-6863 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-G5-6641 
  "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3727                      TCGA-AG-3731 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A023                      TCGA-AG-A025 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6903                      TCGA-BM-6198 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6622                      TCGA-CI-6623 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6861                      TCGA-F5-6863 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-G5-6641 
  "AMP PEAK 22(20Q11.23) MUTATED" 
[1] "hr="     "2.2e+08"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.23) MUTATED     78   66
  AMP PEAK 22(20Q11.23) WILD-TYPE   10    8
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  FEMALE                            66                               8
  MALE                              78                              10
D22V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.23) MUTATED    133    7
  AMP PEAK 22(20Q11.23) WILD-TYPE   10    6
                                clus
vv                               AMP PEAK 22(20Q11.23) MUTATED
  RECTAL ADENOCARCINOMA                                    133
  RECTAL MUCINOUS ADENOCARCINOMA                             7
                                clus
vv                               AMP PEAK 22(20Q11.23) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       10
  RECTAL MUCINOUS ADENOCARCINOMA                               6
D22V5, multiclass
    clus
vv   AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  T1                             7                               2
  T2                            27                               2
  T3                            96                              13
  T4                            13                               1
D22V6, multiclass
    clus
vv   AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  N0                            69                              14
  N1                            44                               1
  N2                            29                               3
D22V7, multiclass
     clus
vv    AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  M0                            106                              17
  M1                             21                               1
  M1A                             2                               0
  MX                             13                               0
D22V8, multiclass
     clus
vv    AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  I                              26                               4
  II                             40                              10
  III                            48                               2
  IV                             23                               2
D22V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.23) MUTATED      5  139
  AMP PEAK 22(20Q11.23) WILD-TYPE    1   17
     clus
vv    AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  NO                              5                               1
  YES                           139                              17

Clustering(23) Variable = Amp Peak 23(20q13.31) mutation analysis
D23V1, survival
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 23(20Q13.31) WILD-TYPE"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3727                      TCGA-AG-3731 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A023                      TCGA-AG-A025 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 23(20Q13.31) WILD-TYPE"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AH-6903                      TCGA-BM-6198 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-CI-6622                      TCGA-CI-6623 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 23(20Q13.31) WILD-TYPE"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6861                      TCGA-F5-6863 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-G5-6641 
  "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 23(20Q13.31) WILD-TYPE"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3727                      TCGA-AG-3731 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A023                      TCGA-AG-A025 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 23(20Q13.31) WILD-TYPE"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AH-6903                      TCGA-BM-6198 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-CI-6622                      TCGA-CI-6623 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 23(20Q13.31) WILD-TYPE"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6861                      TCGA-F5-6863 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-G5-6641 
  "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 23(20Q13.31) WILD-TYPE"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3726 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3727                      TCGA-AG-3731 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A023                      TCGA-AG-A025 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 23(20Q13.31) WILD-TYPE"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-AH-6903                      TCGA-BM-6198 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-CI-6622                      TCGA-CI-6623 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 23(20Q13.31) WILD-TYPE"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "AMP PEAK 23(20Q13.31) MUTATED" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6861                      TCGA-F5-6863 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
  "AMP PEAK 23(20Q13.31) MUTATED"   "AMP PEAK 23(20Q13.31) MUTATED" 
                     TCGA-G5-6641 
  "AMP PEAK 23(20Q13.31) MUTATED" 
[1] "hr="     "2.2e+08"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q13.31) MUTATED     78   67
  AMP PEAK 23(20Q13.31) WILD-TYPE   10    7
        clus
vv       AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  FEMALE                            67                               7
  MALE                              78                              10
D23V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q13.31) MUTATED    133    7
  AMP PEAK 23(20Q13.31) WILD-TYPE   10    6
                                clus
vv                               AMP PEAK 23(20Q13.31) MUTATED
  RECTAL ADENOCARCINOMA                                    133
  RECTAL MUCINOUS ADENOCARCINOMA                             7
                                clus
vv                               AMP PEAK 23(20Q13.31) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       10
  RECTAL MUCINOUS ADENOCARCINOMA                               6
D23V5, multiclass
    clus
vv   AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  T1                             7                               2
  T2                            27                               2
  T3                            97                              12
  T4                            13                               1
D23V6, multiclass
    clus
vv   AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  N0                            70                              13
  N1                            44                               1
  N2                            29                               3
D23V7, multiclass
     clus
vv    AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  M0                            107                              16
  M1                             21                               1
  M1A                             2                               0
  MX                             13                               0
D23V8, multiclass
     clus
vv    AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  I                              26                               4
  II                             41                               9
  III                            48                               2
  IV                             23                               2
D23V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q13.31) MUTATED      5  140
  AMP PEAK 23(20Q13.31) WILD-TYPE    1   16
     clus
vv    AMP PEAK 23(20Q13.31) MUTATED AMP PEAK 23(20Q13.31) WILD-TYPE
  NO                              5                               1
  YES                           140                              16

Clustering(24) Variable = Amp Peak 24(Xp22.2) mutation analysis
D24V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK 24(XP22.2) MUTATED"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK 24(XP22.2) MUTATED"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK 24(XP22.2) MUTATED"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK 24(XP22.2) MUTATED"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK 24(XP22.2) MUTATED"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK 24(XP22.2) MUTATED"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK 24(XP22.2) WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
D24V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XP22.2) MUTATED     13   20
  AMP PEAK 24(XP22.2) WILD-TYPE   75   54
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  FEMALE                          20                            54
  MALE                            13                            75
D24V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XP22.2) MUTATED     32    1
  AMP PEAK 24(XP22.2) WILD-TYPE  111   12
                                clus
vv                               AMP PEAK 24(XP22.2) MUTATED
  RECTAL ADENOCARCINOMA                                   32
  RECTAL MUCINOUS ADENOCARCINOMA                           1
                                clus
vv                               AMP PEAK 24(XP22.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    111
  RECTAL MUCINOUS ADENOCARCINOMA                            12
D24V5, multiclass
    clus
vv   AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  T1                           1                             8
  T2                           8                            21
  T3                          21                            88
  T4                           3                            11
D24V6, multiclass
    clus
vv   AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  N0                          15                            68
  N1                          11                            34
  N2                           6                            26
D24V7, multiclass
     clus
vv    AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  M0                           23                           100
  M1                            7                            15
  M1A                           0                             2
  MX                            3                            10
D24V8, multiclass
     clus
vv    AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  I                             5                            25
  II                            8                            42
  III                          11                            39
  IV                            7                            18
D24V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XP22.2) MUTATED      0   33
  AMP PEAK 24(XP22.2) WILD-TYPE    6  123
     clus
vv    AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  NO                            0                             6
  YES                          33                           123

Clustering(25) Variable = Amp Peak 25(Xq27.3) mutation analysis
D25V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A015                    TCGA-AG-A016 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK 25(XQ27.3) WILD-TYPE" 
[1] "hr=" "1.8"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ27.3) MUTATED     18   20
  AMP PEAK 25(XQ27.3) WILD-TYPE   70   54
        clus
vv       AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE
  FEMALE                          20                            54
  MALE                            18                            70
D25V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ27.3) MUTATED     34    1
  AMP PEAK 25(XQ27.3) WILD-TYPE  109   12
                                clus
vv                               AMP PEAK 25(XQ27.3) MUTATED
  RECTAL ADENOCARCINOMA                                   34
  RECTAL MUCINOUS ADENOCARCINOMA                           1
                                clus
vv                               AMP PEAK 25(XQ27.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    109
  RECTAL MUCINOUS ADENOCARCINOMA                            12
D25V5, multiclass
    clus
vv   AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE
  T1                           2                             7
  T2                           7                            22
  T3                          23                            86
  T4                           6                             8
D25V6, multiclass
    clus
vv   AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE
  N0                          18                            65
  N1                          10                            35
  N2                           9                            23
D25V7, multiclass
     clus
vv    AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE
  M0                           28                            95
  M1                            6                            16
  M1A                           1                             1
  MX                            3                            10
D25V8, multiclass
     clus
vv    AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE
  I                             9                            21
  II                            9                            41
  III                          12                            38
  IV                            6                            19
D25V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ27.3) MUTATED      0   38
  AMP PEAK 25(XQ27.3) WILD-TYPE    6  118
     clus
vv    AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE
  NO                            0                             6
  YES                          38                           118

Clustering(26) Variable = Del Peak  1(1p36.11) mutation analysis
D26V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-G5-6641 
  "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-G5-6641 
  "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-G5-6641 
  "DEL PEAK  1(1P36.11) MUTATED" 
[1] "hr=" "1"  
D26V2, continuous
D26V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED     40   31
  DEL PEAK  1(1P36.11) WILD-TYPE   48   43
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  FEMALE                           31                             43
  MALE                             40                             48
D26V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED     60    7
  DEL PEAK  1(1P36.11) WILD-TYPE   83    6
                                clus
vv                               DEL PEAK  1(1P36.11) MUTATED
  RECTAL ADENOCARCINOMA                                    60
  RECTAL MUCINOUS ADENOCARCINOMA                            7
                                clus
vv                               DEL PEAK  1(1P36.11) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      83
  RECTAL MUCINOUS ADENOCARCINOMA                              6
D26V5, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  T1                            2                              7
  T2                           13                             16
  T3                           45                             64
  T4                           10                              4
D26V6, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  N0                           31                             52
  N1                           22                             23
  N2                           17                             15
D26V7, multiclass
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  M0                            51                             72
  M1                            11                             11
  M1A                            2                              0
  MX                             5                              8
D26V8, multiclass
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  I                             11                             19
  II                            20                             30
  III                           23                             27
  IV                            13                             12
D26V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED      3   68
  DEL PEAK  1(1P36.11) WILD-TYPE    3   88
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  NO                             3                              3
  YES                           68                             88

Clustering(27) Variable = Del Peak  2(1p33) mutation analysis
D27V1, survival
                 TCGA-AF-2687                  TCGA-AF-2689 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A032                  TCGA-AH-6544 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-CI-6624                  TCGA-CL-4957 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-6156                  TCGA-DC-6157 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EF-5831                  TCGA-EI-6506 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-G5-6641 
"DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A032                  TCGA-AH-6544 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-CI-6624                  TCGA-CL-4957 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-6156                  TCGA-DC-6157 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EF-5831                  TCGA-EI-6506 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-G5-6641 
"DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A032                  TCGA-AH-6544 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-CI-6624                  TCGA-CL-4957 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-6156                  TCGA-DC-6157 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EF-5831                  TCGA-EI-6506 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-G5-6641 
"DEL PEAK  2(1P33) WILD-TYPE" 
[1] "hr=" "1.5"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1P33) MUTATED     27   22
  DEL PEAK  2(1P33) WILD-TYPE   61   52
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  FEMALE                        22                          52
  MALE                          27                          61
D27V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1P33) MUTATED     45    1
  DEL PEAK  2(1P33) WILD-TYPE   98   12
                                clus
vv                               DEL PEAK  2(1P33) MUTATED
  RECTAL ADENOCARCINOMA                                 45
  RECTAL MUCINOUS ADENOCARCINOMA                         1
                                clus
vv                               DEL PEAK  2(1P33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   98
  RECTAL MUCINOUS ADENOCARCINOMA                          12
D27V5, multiclass
    clus
vv   DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  T1                         1                           8
  T2                         7                          22
  T3                        36                          73
  T4                         4                          10
D27V6, multiclass
    clus
vv   DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  N0                        22                          61
  N1                        18                          27
  N2                         8                          24
D27V7, multiclass
     clus
vv    DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  M0                         36                          87
  M1                          8                          14
  M1A                         0                           2
  MX                          3                          10
D27V8, multiclass
     clus
vv    DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  I                           6                          24
  II                         16                          34
  III                        16                          34
  IV                          8                          17
D27V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1P33) MUTATED      3   46
  DEL PEAK  2(1P33) WILD-TYPE    3  110
     clus
vv    DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  NO                          3                           3
  YES                        46                         110

Clustering(28) Variable = Del Peak  3(1p13.2) mutation analysis
D28V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-G5-6641 
"DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-G5-6641 
"DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-G5-6641 
"DEL PEAK  3(1P13.2) WILD-TYPE" 
[1] "hr=" "1"  
D28V2, continuous
D28V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P13.2) MUTATED     29   22
  DEL PEAK  3(1P13.2) WILD-TYPE   59   52
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  FEMALE                          22                            52
  MALE                            29                            59
D28V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P13.2) MUTATED     46    2
  DEL PEAK  3(1P13.2) WILD-TYPE   97   11
                                clus
vv                               DEL PEAK  3(1P13.2) MUTATED
  RECTAL ADENOCARCINOMA                                   46
  RECTAL MUCINOUS ADENOCARCINOMA                           2
                                clus
vv                               DEL PEAK  3(1P13.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     97
  RECTAL MUCINOUS ADENOCARCINOMA                            11
D28V5, multiclass
    clus
vv   DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  T1                           1                             8
  T2                           5                            24
  T3                          39                            70
  T4                           5                             9
D28V6, multiclass
    clus
vv   DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  N0                          24                            59
  N1                          15                            30
  N2                          11                            21
D28V7, multiclass
     clus
vv    DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  M0                           39                            84
  M1                            8                            14
  M1A                           0                             2
  MX                            2                            11
D28V8, multiclass
     clus
vv    DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  I                             5                            25
  II                           20                            30
  III                          15                            35
  IV                            8                            17
D28V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P13.2) MUTATED      3   48
  DEL PEAK  3(1P13.2) WILD-TYPE    3  108
     clus
vv    DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  NO                            3                             3
  YES                          48                           108

Clustering(29) Variable = Del Peak  4(2p12) mutation analysis
D29V1, survival
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" 
[1] "hr="     "2.7e+07"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2P12) MUTATED     10    7
  DEL PEAK  4(2P12) WILD-TYPE   78   67
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  FEMALE                         7                          67
  MALE                          10                          78
D29V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2P12) MUTATED     15    1
  DEL PEAK  4(2P12) WILD-TYPE  128   12
                                clus
vv                               DEL PEAK  4(2P12) MUTATED
  RECTAL ADENOCARCINOMA                                 15
  RECTAL MUCINOUS ADENOCARCINOMA                         1
                                clus
vv                               DEL PEAK  4(2P12) WILD-TYPE
  RECTAL ADENOCARCINOMA                                  128
  RECTAL MUCINOUS ADENOCARCINOMA                          12
D29V5, multiclass
    clus
vv   DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  T1                         0                           9
  T2                         1                          28
  T3                        15                          94
  T4                         1                          13
D29V6, multiclass
    clus
vv   DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  N0                        10                          73
  N1                         3                          42
  N2                         4                          28
D29V7, multiclass
     clus
vv    DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  M0                         14                         109
  M1                          1                          21
  M1A                         1                           1
  MX                          1                          12
D29V8, multiclass
     clus
vv    DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  I                           1                          29
  II                          9                          41
  III                         5                          45
  IV                          2                          23
D29V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2P12) MUTATED      1   16
  DEL PEAK  4(2P12) WILD-TYPE    5  140
     clus
vv    DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  NO                          1                           5
  YES                        16                         140

Clustering(30) Variable = Del Peak  5(3p14.2) mutation analysis
D30V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "DEL PEAK  5(3P14.2) MUTATED"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "DEL PEAK  5(3P14.2) MUTATED"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "DEL PEAK  5(3P14.2) MUTATED"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK  5(3P14.2) WILD-TYPE" 
[1] "hr=" "4.8"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) MUTATED     22    7
  DEL PEAK  5(3P14.2) WILD-TYPE   66   67
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  FEMALE                           7                            67
  MALE                            22                            66
D30V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) MUTATED     23    3
  DEL PEAK  5(3P14.2) WILD-TYPE  120   10
                                clus
vv                               DEL PEAK  5(3P14.2) MUTATED
  RECTAL ADENOCARCINOMA                                   23
  RECTAL MUCINOUS ADENOCARCINOMA                           3
                                clus
vv                               DEL PEAK  5(3P14.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    120
  RECTAL MUCINOUS ADENOCARCINOMA                            10
D30V5, multiclass
    clus
vv   DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  T1                           4                             5
  T2                           6                            23
  T3                          17                            92
  T4                           2                            12
D30V6, multiclass
    clus
vv   DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  N0                          16                            67
  N1                           8                            37
  N2                           5                            27
D30V7, multiclass
     clus
vv    DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  M0                           19                           104
  M1                            7                            15
  M1A                           0                             2
  MX                            2                            11
D30V8, multiclass
     clus
vv    DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  I                             9                            21
  II                            8                            42
  III                           4                            46
  IV                            7                            18
D30V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) MUTATED      2   27
  DEL PEAK  5(3P14.2) WILD-TYPE    4  129
     clus
vv    DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  NO                            2                             4
  YES                          27                           129

Clustering(31) Variable = Del Peak  6(3q26.31) mutation analysis
D31V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK  6(3Q26.31) MUTATED"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK  6(3Q26.31) MUTATED"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK  6(3Q26.31) MUTATED"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK  6(3Q26.31) WILD-TYPE" 
[1] "hr=" "13" 
D31V2, continuous
D31V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q26.31) MUTATED     15    2
  DEL PEAK  6(3Q26.31) WILD-TYPE   73   72
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  FEMALE                            2                             72
  MALE                             15                             73
D31V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q26.31) MUTATED     12    4
  DEL PEAK  6(3Q26.31) WILD-TYPE  131    9
                                clus
vv                               DEL PEAK  6(3Q26.31) MUTATED
  RECTAL ADENOCARCINOMA                                    12
  RECTAL MUCINOUS ADENOCARCINOMA                            4
                                clus
vv                               DEL PEAK  6(3Q26.31) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     131
  RECTAL MUCINOUS ADENOCARCINOMA                              9
D31V5, multiclass
    clus
vv   DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  T1                            0                              9
  T2                            1                             28
  T3                           13                             96
  T4                            3                             11
D31V6, multiclass
    clus
vv   DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  N0                            8                             75
  N1                            4                             41
  N2                            5                             27
D31V7, multiclass
     clus
vv    DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  M0                            10                            113
  M1                             5                             17
  M1A                            0                              2
  MX                             1                             12
D31V8, multiclass
     clus
vv    DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  I                              0                             30
  II                             9                             41
  III                            2                             48
  IV                             6                             19
D31V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q26.31) MUTATED      2   15
  DEL PEAK  6(3Q26.31) WILD-TYPE    4  141
     clus
vv    DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  NO                             2                              4
  YES                           15                            141

Clustering(32) Variable = Del Peak  7(4p13) mutation analysis
D32V1, survival
                 TCGA-AF-2687                  TCGA-AF-2689 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-CI-6619                  TCGA-CI-6620 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6158                  TCGA-DC-6160 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-F5-6702                  TCGA-F5-6810 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6641 
  "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-2687                  TCGA-AF-2689 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-CI-6619                  TCGA-CI-6620 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6158                  TCGA-DC-6160 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-F5-6702                  TCGA-F5-6810 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6641 
  "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-2687                  TCGA-AF-2689 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-CI-6619                  TCGA-CI-6620 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6158                  TCGA-DC-6160 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-F5-6702                  TCGA-F5-6810 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6641 
  "DEL PEAK  7(4P13) MUTATED" 
[1] "hr=" "2.6"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4P13) MUTATED     37   21
  DEL PEAK  7(4P13) WILD-TYPE   51   53
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  FEMALE                        21                          53
  MALE                          37                          51
D32V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4P13) MUTATED     53    3
  DEL PEAK  7(4P13) WILD-TYPE   90   10
                                clus
vv                               DEL PEAK  7(4P13) MUTATED
  RECTAL ADENOCARCINOMA                                 53
  RECTAL MUCINOUS ADENOCARCINOMA                         3
                                clus
vv                               DEL PEAK  7(4P13) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   90
  RECTAL MUCINOUS ADENOCARCINOMA                          10
D32V5, multiclass
    clus
vv   DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  T1                         2                           7
  T2                        10                          19
  T3                        42                          67
  T4                         4                          10
D32V6, multiclass
    clus
vv   DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  N0                        26                          57
  N1                        20                          25
  N2                        12                          20
D32V7, multiclass
     clus
vv    DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  M0                         43                          80
  M1                          8                          14
  M1A                         1                           1
  MX                          5                           8
D32V8, multiclass
     clus
vv    DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  I                           9                          21
  II                         17                          33
  III                        20                          30
  IV                         11                          14
D32V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4P13) MUTATED      6   52
  DEL PEAK  7(4P13) WILD-TYPE    0  104
     clus
vv    DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  NO                          6                           0
  YES                        52                         104

Clustering(33) Variable = Del Peak  8(4q22.1) mutation analysis
D33V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6509                    TCGA-EI-6510 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6641 
  "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6509                    TCGA-EI-6510 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6641 
  "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6509                    TCGA-EI-6510 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6641 
  "DEL PEAK  8(4Q22.1) MUTATED" 
[1] "hr=" "3.3"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) MUTATED     44   28
  DEL PEAK  8(4Q22.1) WILD-TYPE   44   46
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  FEMALE                          28                            46
  MALE                            44                            44
D33V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) MUTATED     64    4
  DEL PEAK  8(4Q22.1) WILD-TYPE   79    9
                                clus
vv                               DEL PEAK  8(4Q22.1) MUTATED
  RECTAL ADENOCARCINOMA                                   64
  RECTAL MUCINOUS ADENOCARCINOMA                           4
                                clus
vv                               DEL PEAK  8(4Q22.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     79
  RECTAL MUCINOUS ADENOCARCINOMA                             9
D33V5, multiclass
    clus
vv   DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  T1                           2                             7
  T2                          10                            19
  T3                          53                            56
  T4                           7                             7
D33V6, multiclass
    clus
vv   DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  N0                          35                            48
  N1                          21                            24
  N2                          16                            16
D33V7, multiclass
     clus
vv    DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  M0                           56                            67
  M1                            8                            14
  M1A                           1                             1
  MX                            6                             7
D33V8, multiclass
     clus
vv    DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  I                            11                            19
  II                           25                            25
  III                          24                            26
  IV                           10                            15
D33V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) MUTATED      5   67
  DEL PEAK  8(4Q22.1) WILD-TYPE    1   89
     clus
vv    DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  NO                            5                             1
  YES                          67                            89

Clustering(34) Variable = Del Peak  9(4q35.1) mutation analysis
D34V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-G5-6641 
  "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-G5-6641 
  "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-G5-6641 
  "DEL PEAK  9(4Q35.1) MUTATED" 
[1] "hr=" "2"  
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q35.1) MUTATED     42   30
  DEL PEAK  9(4Q35.1) WILD-TYPE   46   44
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  FEMALE                          30                            44
  MALE                            42                            46
D34V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q35.1) MUTATED     65    3
  DEL PEAK  9(4Q35.1) WILD-TYPE   78   10
                                clus
vv                               DEL PEAK  9(4Q35.1) MUTATED
  RECTAL ADENOCARCINOMA                                   65
  RECTAL MUCINOUS ADENOCARCINOMA                           3
                                clus
vv                               DEL PEAK  9(4Q35.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     78
  RECTAL MUCINOUS ADENOCARCINOMA                            10
D34V5, multiclass
    clus
vv   DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  T1                           3                             6
  T2                          12                            17
  T3                          53                            56
  T4                           4                            10
D34V6, multiclass
    clus
vv   DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  N0                          35                            48
  N1                          20                            25
  N2                          17                            15
D34V7, multiclass
     clus
vv    DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  M0                           55                            68
  M1                            9                            13
  M1A                           1                             1
  MX                            6                             7
D34V8, multiclass
     clus
vv    DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  I                            13                            17
  II                           23                            27
  III                          24                            26
  IV                            9                            16
D34V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q35.1) MUTATED      5   67
  DEL PEAK  9(4Q35.1) WILD-TYPE    1   89
     clus
vv    DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  NO                            5                             1
  YES                          67                            89

Clustering(35) Variable = Del Peak 10(5q11.2) mutation analysis
D35V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-F5-6465                    TCGA-F5-6571 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6641 
  "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-F5-6465                    TCGA-F5-6571 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6641 
  "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-F5-6465                    TCGA-F5-6571 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6641 
  "DEL PEAK 10(5Q11.2) MUTATED" 
[1] "hr=" "1.3"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) MUTATED     23   26
  DEL PEAK 10(5Q11.2) WILD-TYPE   65   48
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  FEMALE                          26                            48
  MALE                            23                            65
D35V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) MUTATED     46    2
  DEL PEAK 10(5Q11.2) WILD-TYPE   97   11
                                clus
vv                               DEL PEAK 10(5Q11.2) MUTATED
  RECTAL ADENOCARCINOMA                                   46
  RECTAL MUCINOUS ADENOCARCINOMA                           2
                                clus
vv                               DEL PEAK 10(5Q11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     97
  RECTAL MUCINOUS ADENOCARCINOMA                            11
D35V5, multiclass
    clus
vv   DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  T1                           2                             7
  T2                           8                            21
  T3                          35                            74
  T4                           4                            10
D35V6, multiclass
    clus
vv   DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  N0                          24                            59
  N1                          15                            30
  N2                          10                            22
D35V7, multiclass
     clus
vv    DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  M0                           33                            90
  M1                            9                            13
  M1A                           1                             1
  MX                            5                             8
D35V8, multiclass
     clus
vv    DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  I                             7                            23
  II                           17                            33
  III                          12                            38
  IV                           11                            14
D35V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) MUTATED      5   44
  DEL PEAK 10(5Q11.2) WILD-TYPE    1  112
     clus
vv    DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  NO                            5                             1
  YES                          44                           112

Clustering(36) Variable = Del Peak 11(5q22.2) mutation analysis
D36V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6507                    TCGA-EI-6508 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 11(5Q22.2) WILD-TYPE" 
[1] "hr=" "1.4"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q22.2) MUTATED     27   28
  DEL PEAK 11(5Q22.2) WILD-TYPE   61   46
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  FEMALE                          28                            46
  MALE                            27                            61
D36V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q22.2) MUTATED     52    2
  DEL PEAK 11(5Q22.2) WILD-TYPE   91   11
                                clus
vv                               DEL PEAK 11(5Q22.2) MUTATED
  RECTAL ADENOCARCINOMA                                   52
  RECTAL MUCINOUS ADENOCARCINOMA                           2
                                clus
vv                               DEL PEAK 11(5Q22.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     91
  RECTAL MUCINOUS ADENOCARCINOMA                            11
D36V5, multiclass
    clus
vv   DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  T1                           1                             8
  T2                           9                            20
  T3                          40                            69
  T4                           5                             9
D36V6, multiclass
    clus
vv   DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  N0                          26                            57
  N1                          19                            26
  N2                          10                            22
D36V7, multiclass
     clus
vv    DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  M0                           41                            82
  M1                            7                            15
  M1A                           1                             1
  MX                            5                             8
D36V8, multiclass
     clus
vv    DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  I                             7                            23
  II                           18                            32
  III                          19                            31
  IV                            9                            16
D36V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q22.2) MUTATED      5   50
  DEL PEAK 11(5Q22.2) WILD-TYPE    1  106
     clus
vv    DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  NO                            5                             1
  YES                          50                           106

Clustering(37) Variable = Del Peak 12(6p25.3) mutation analysis
D37V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 12(6P25.3) WILD-TYPE" 
[1] "hr=" "2.6"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED     14   10
  DEL PEAK 12(6P25.3) WILD-TYPE   74   64
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  FEMALE                          10                            64
  MALE                            14                            74
D37V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED     18    3
  DEL PEAK 12(6P25.3) WILD-TYPE  125   10
                                clus
vv                               DEL PEAK 12(6P25.3) MUTATED
  RECTAL ADENOCARCINOMA                                   18
  RECTAL MUCINOUS ADENOCARCINOMA                           3
                                clus
vv                               DEL PEAK 12(6P25.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    125
  RECTAL MUCINOUS ADENOCARCINOMA                            10
D37V5, multiclass
    clus
vv   DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  T1                           0                             9
  T2                           2                            27
  T3                          21                            88
  T4                           1                            13
D37V6, multiclass
    clus
vv   DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  N0                          15                            68
  N1                           4                            41
  N2                           5                            27
D37V7, multiclass
     clus
vv    DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  M0                           18                           105
  M1                            2                            20
  M1A                           0                             2
  MX                            3                            10
D37V8, multiclass
     clus
vv    DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  I                             2                            28
  II                           13                            37
  III                           5                            45
  IV                            3                            22
D37V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED      2   22
  DEL PEAK 12(6P25.3) WILD-TYPE    4  134
     clus
vv    DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  NO                            2                             4
  YES                          22                           134

Clustering(38) Variable = Del Peak 13(6q26) mutation analysis
D38V1, survival
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-2692                  TCGA-AF-2693 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-3400                  TCGA-AF-3911 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4007                  TCGA-AG-4008 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A011                  TCGA-AG-A014 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6644                  TCGA-AH-6897 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6641 
  "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-2692                  TCGA-AF-2693 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-3400                  TCGA-AF-3911 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4007                  TCGA-AG-4008 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A011                  TCGA-AG-A014 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6644                  TCGA-AH-6897 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6641 
  "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-2692                  TCGA-AF-2693 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-3400                  TCGA-AF-3911 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4007                  TCGA-AG-4008 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A011                  TCGA-AG-A014 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6644                  TCGA-AH-6897 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6641 
  "DEL PEAK 13(6Q26) MUTATED" 
[1] "hr=" "2.7"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED     20   10
  DEL PEAK 13(6Q26) WILD-TYPE   68   64
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  FEMALE                        10                          64
  MALE                          20                          68
D38V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED     22    6
  DEL PEAK 13(6Q26) WILD-TYPE  121    7
                                clus
vv                               DEL PEAK 13(6Q26) MUTATED
  RECTAL ADENOCARCINOMA                                 22
  RECTAL MUCINOUS ADENOCARCINOMA                         6
                                clus
vv                               DEL PEAK 13(6Q26) WILD-TYPE
  RECTAL ADENOCARCINOMA                                  121
  RECTAL MUCINOUS ADENOCARCINOMA                           7
D38V5, multiclass
    clus
vv   DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  T1                         3                           6
  T2                         3                          26
  T3                        21                          88
  T4                         3                          11
D38V6, multiclass
    clus
vv   DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  N0                        16                          67
  N1                         4                          41
  N2                         9                          23
D38V7, multiclass
     clus
vv    DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  M0                         22                         101
  M1                          4                          18
  M1A                         0                           2
  MX                          4                           9
D38V8, multiclass
     clus
vv    DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  I                           5                          25
  II                         12                          38
  III                         7                          43
  IV                          3                          22
D38V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED      2   28
  DEL PEAK 13(6Q26) WILD-TYPE    4  128
     clus
vv    DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  NO                          2                           4
  YES                        28                         128

Clustering(39) Variable = Del Peak 14(7q31.1) mutation analysis
D39V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
[1] "Remove cluster labels:"      "DEL PEAK 14(7Q31.1) MUTATED"
clus
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                           123 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
D39V2, continuous
D39V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) MUTATED      2    2
  DEL PEAK 14(7Q31.1) WILD-TYPE   86   72
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  FEMALE                           2                            72
  MALE                             2                            86
D39V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) MUTATED      3    1
  DEL PEAK 14(7Q31.1) WILD-TYPE  140   12
                                clus
vv                               DEL PEAK 14(7Q31.1) MUTATED
  RECTAL ADENOCARCINOMA                                    3
  RECTAL MUCINOUS ADENOCARCINOMA                           1
                                clus
vv                               DEL PEAK 14(7Q31.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    140
  RECTAL MUCINOUS ADENOCARCINOMA                            12
D39V5, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  T1                           0                             9
  T2                           1                            28
  T3                           3                           106
  T4                           0                            14
D39V6, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  N0                           3                            80
  N1                           0                            45
  N2                           1                            31
D39V7, multiclass
     clus
vv    DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  M0                            4                           119
  M1                            0                            22
  M1A                           0                             2
  MX                            0                            13
D39V8, multiclass
     clus
vv    DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  I                             1                            29
  II                            2                            48
  III                           1                            49
  IV                            0                            25
D39V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) MUTATED      0    4
  DEL PEAK 14(7Q31.1) WILD-TYPE    6  152
     clus
vv    DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  NO                            0                             6
  YES                           4                           152

Clustering(40) Variable = Del Peak 15(8p23.2) mutation analysis
D40V1, survival
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3727                    TCGA-AG-3731 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A023                    TCGA-AG-A025 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-CL-5917                    TCGA-CL-5918 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EF-5831                    TCGA-EI-6506 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-G5-6641 
  "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3727                    TCGA-AG-3731 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A023                    TCGA-AG-A025 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-CL-5917                    TCGA-CL-5918 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EF-5831                    TCGA-EI-6506 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-G5-6641 
  "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3727                    TCGA-AG-3731 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-4007                    TCGA-AG-4008 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A023                    TCGA-AG-A025 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-CL-5917                    TCGA-CL-5918 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6156                    TCGA-DC-6157 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6158                    TCGA-DC-6160 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6683                    TCGA-DT-5265 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EF-5831                    TCGA-EI-6506 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6885                    TCGA-EI-6917 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6702                    TCGA-F5-6810 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6813                    TCGA-F5-6814 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6864                    TCGA-G5-6233 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-G5-6641 
  "DEL PEAK 15(8P23.2) MUTATED" 
[1] "hr=" "1.3"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P23.2) MUTATED     55   45
  DEL PEAK 15(8P23.2) WILD-TYPE   33   29
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  FEMALE                          45                            29
  MALE                            55                            33
D40V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P23.2) MUTATED     89    7
  DEL PEAK 15(8P23.2) WILD-TYPE   54    6
                                clus
vv                               DEL PEAK 15(8P23.2) MUTATED
  RECTAL ADENOCARCINOMA                                   89
  RECTAL MUCINOUS ADENOCARCINOMA                           7
                                clus
vv                               DEL PEAK 15(8P23.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     54
  RECTAL MUCINOUS ADENOCARCINOMA                             6
D40V5, multiclass
    clus
vv   DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  T1                           3                             6
  T2                          18                            11
  T3                          68                            41
  T4                          11                             3
D40V6, multiclass
    clus
vv   DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  N0                          48                            35
  N1                          29                            16
  N2                          22                            10
D40V7, multiclass
     clus
vv    DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  M0                           74                            49
  M1                           15                             7
  M1A                           1                             1
  MX                            9                             4
D40V8, multiclass
     clus
vv    DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  I                            16                            14
  II                           31                            19
  III                          32                            18
  IV                           16                             9
D40V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P23.2) MUTATED      6   94
  DEL PEAK 15(8P23.2) WILD-TYPE    0   62
     clus
vv    DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  NO                            6                             0
  YES                          94                            62

Clustering(41) Variable = Del Peak 16(8p11.21) mutation analysis
D41V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 16(8P11.21) WILD-TYPE" 
[1] "hr=" "1.2"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) MUTATED     15    9
  DEL PEAK 16(8P11.21) WILD-TYPE   73   65
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  FEMALE                            9                             65
  MALE                             15                             73
D41V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) MUTATED     20    2
  DEL PEAK 16(8P11.21) WILD-TYPE  123   11
                                clus
vv                               DEL PEAK 16(8P11.21) MUTATED
  RECTAL ADENOCARCINOMA                                    20
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               DEL PEAK 16(8P11.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     123
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D41V5, multiclass
    clus
vv   DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  T1                            1                              8
  T2                            3                             26
  T3                           19                             90
  T4                            1                             13
D41V6, multiclass
    clus
vv   DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  N0                           12                             71
  N1                            8                             37
  N2                            4                             28
D41V7, multiclass
     clus
vv    DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  M0                            15                            108
  M1                             6                             16
  M1A                            1                              1
  MX                             1                             12
D41V8, multiclass
     clus
vv    DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  I                              3                             27
  II                             9                             41
  III                            5                             45
  IV                             6                             19
D41V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) MUTATED      2   22
  DEL PEAK 16(8P11.21) WILD-TYPE    4  134
     clus
vv    DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  NO                             2                              4
  YES                           22                            134

Clustering(42) Variable = Del Peak 17(10q21.1) mutation analysis
D42V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 17(10Q21.1) MUTATED" 
[1] "hr=" "2"  
D42V2, continuous
D42V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10Q21.1) MUTATED     22   15
  DEL PEAK 17(10Q21.1) WILD-TYPE   66   59
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  FEMALE                           15                             59
  MALE                             22                             66
D42V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10Q21.1) MUTATED     31    5
  DEL PEAK 17(10Q21.1) WILD-TYPE  112    8
                                clus
vv                               DEL PEAK 17(10Q21.1) MUTATED
  RECTAL ADENOCARCINOMA                                    31
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               DEL PEAK 17(10Q21.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     112
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D42V5, multiclass
    clus
vv   DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  T1                            1                              8
  T2                            8                             21
  T3                           25                             84
  T4                            3                             11
D42V6, multiclass
    clus
vv   DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  N0                           21                             62
  N1                           11                             34
  N2                            5                             27
D42V7, multiclass
     clus
vv    DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  M0                            33                             90
  M1                             1                             21
  M1A                            0                              2
  MX                             3                             10
D42V8, multiclass
     clus
vv    DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  I                              7                             23
  II                            14                             36
  III                           14                             36
  IV                             2                             23
D42V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10Q21.1) MUTATED      4   33
  DEL PEAK 17(10Q21.1) WILD-TYPE    2  123
     clus
vv    DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  NO                             4                              2
  YES                           33                            123

Clustering(43) Variable = Del Peak 18(10q25.2) mutation analysis
D43V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-G5-6641 
  "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-G5-6641 
  "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-G5-6641 
  "DEL PEAK 18(10Q25.2) MUTATED" 
[1] "hr=" "1.9"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q25.2) MUTATED     25   22
  DEL PEAK 18(10Q25.2) WILD-TYPE   63   52
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  FEMALE                           22                             52
  MALE                             25                             63
D43V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q25.2) MUTATED     38    7
  DEL PEAK 18(10Q25.2) WILD-TYPE  105    6
                                clus
vv                               DEL PEAK 18(10Q25.2) MUTATED
  RECTAL ADENOCARCINOMA                                    38
  RECTAL MUCINOUS ADENOCARCINOMA                            7
                                clus
vv                               DEL PEAK 18(10Q25.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     105
  RECTAL MUCINOUS ADENOCARCINOMA                              6
D43V5, multiclass
    clus
vv   DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  T1                            1                              8
  T2                            8                             21
  T3                           36                             73
  T4                            1                             13
D43V6, multiclass
    clus
vv   DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  N0                           24                             59
  N1                           12                             33
  N2                           10                             22
D43V7, multiclass
     clus
vv    DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  M0                            38                             85
  M1                             4                             18
  M1A                            0                              2
  MX                             3                             10
D43V8, multiclass
     clus
vv    DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  I                              7                             23
  II                            17                             33
  III                           17                             33
  IV                             4                             21
D43V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q25.2) MUTATED      5   42
  DEL PEAK 18(10Q25.2) WILD-TYPE    1  114
     clus
vv    DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  NO                             5                              1
  YES                           42                            114

Clustering(44) Variable = Del Peak 19(11q22.3) mutation analysis
D44V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 19(11Q22.3) WILD-TYPE" 
[1] "hr=" "2.8"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) MUTATED     19   18
  DEL PEAK 19(11Q22.3) WILD-TYPE   69   56
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  FEMALE                           18                             56
  MALE                             19                             69
D44V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) MUTATED     27    6
  DEL PEAK 19(11Q22.3) WILD-TYPE  116    7
                                clus
vv                               DEL PEAK 19(11Q22.3) MUTATED
  RECTAL ADENOCARCINOMA                                    27
  RECTAL MUCINOUS ADENOCARCINOMA                            6
                                clus
vv                               DEL PEAK 19(11Q22.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     116
  RECTAL MUCINOUS ADENOCARCINOMA                              7
D44V5, multiclass
    clus
vv   DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  T1                            1                              8
  T2                            9                             20
  T3                           24                             85
  T4                            3                             11
D44V6, multiclass
    clus
vv   DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  N0                           18                             65
  N1                           11                             34
  N2                            7                             25
D44V7, multiclass
     clus
vv    DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  M0                            30                             93
  M1                             1                             21
  M1A                            0                              2
  MX                             5                              8
D44V8, multiclass
     clus
vv    DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  I                              9                             21
  II                             9                             41
  III                           14                             36
  IV                             3                             22
D44V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) MUTATED      3   34
  DEL PEAK 19(11Q22.3) WILD-TYPE    3  122
     clus
vv    DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  NO                             3                              3
  YES                           34                            122

Clustering(45) Variable = Del Peak 20(12p13.1) mutation analysis
D45V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 20(12P13.1) MUTATED" 
[1] "hr=" "2.8"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.1) MUTATED     17   16
  DEL PEAK 20(12P13.1) WILD-TYPE   71   58
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  FEMALE                           16                             58
  MALE                             17                             71
D45V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.1) MUTATED     29    1
  DEL PEAK 20(12P13.1) WILD-TYPE  114   12
                                clus
vv                               DEL PEAK 20(12P13.1) MUTATED
  RECTAL ADENOCARCINOMA                                    29
  RECTAL MUCINOUS ADENOCARCINOMA                            1
                                clus
vv                               DEL PEAK 20(12P13.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     114
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D45V5, multiclass
    clus
vv   DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  T1                            2                              7
  T2                            5                             24
  T3                           24                             85
  T4                            2                             12
D45V6, multiclass
    clus
vv   DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  N0                           14                             69
  N1                           14                             31
  N2                            5                             27
D45V7, multiclass
     clus
vv    DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  M0                            22                            101
  M1                             7                             15
  M1A                            0                              2
  MX                             4                              9
D45V8, multiclass
     clus
vv    DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  I                              4                             26
  II                            10                             40
  III                           11                             39
  IV                             6                             19
D45V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.1) MUTATED      1   32
  DEL PEAK 20(12P13.1) WILD-TYPE    5  124
     clus
vv    DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  NO                             1                              5
  YES                           32                            124

Clustering(46) Variable = Del Peak 21(12q21.33) mutation analysis
D46V1, survival
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3583                      TCGA-AG-3587 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "DEL PEAK 21(12Q21.33) MUTATED"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6683                      TCGA-DT-5265 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-G5-6641 
"DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3583                      TCGA-AG-3587 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "DEL PEAK 21(12Q21.33) MUTATED"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6683                      TCGA-DT-5265 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-G5-6641 
"DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3583                      TCGA-AG-3587 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "DEL PEAK 21(12Q21.33) MUTATED"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6683                      TCGA-DT-5265 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "DEL PEAK 21(12Q21.33) MUTATED" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"DEL PEAK 21(12Q21.33) WILD-TYPE"   "DEL PEAK 21(12Q21.33) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-G5-6641 
"DEL PEAK 21(12Q21.33) WILD-TYPE" 
[1] "hr=" "1.5"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(12Q21.33) MUTATED     15   13
  DEL PEAK 21(12Q21.33) WILD-TYPE   73   61
        clus
vv       DEL PEAK 21(12Q21.33) MUTATED DEL PEAK 21(12Q21.33) WILD-TYPE
  FEMALE                            13                              61
  MALE                              15                              73
D46V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(12Q21.33) MUTATED     26    1
  DEL PEAK 21(12Q21.33) WILD-TYPE  117   12
                                clus
vv                               DEL PEAK 21(12Q21.33) MUTATED
  RECTAL ADENOCARCINOMA                                     26
  RECTAL MUCINOUS ADENOCARCINOMA                             1
                                clus
vv                               DEL PEAK 21(12Q21.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      117
  RECTAL MUCINOUS ADENOCARCINOMA                              12
D46V5, multiclass
    clus
vv   DEL PEAK 21(12Q21.33) MUTATED DEL PEAK 21(12Q21.33) WILD-TYPE
  T1                             1                               8
  T2                             4                              25
  T3                            22                              87
  T4                             1                              13
D46V6, multiclass
    clus
vv   DEL PEAK 21(12Q21.33) MUTATED DEL PEAK 21(12Q21.33) WILD-TYPE
  N0                            16                              67
  N1                             7                              38
  N2                             5                              27
D46V7, multiclass
     clus
vv    DEL PEAK 21(12Q21.33) MUTATED DEL PEAK 21(12Q21.33) WILD-TYPE
  M0                             24                              99
  M1                              2                              20
  M1A                             0                               2
  MX                              2                              11
D46V8, multiclass
     clus
vv    DEL PEAK 21(12Q21.33) MUTATED DEL PEAK 21(12Q21.33) WILD-TYPE
  I                               4                              26
  II                             13                              37
  III                             8                              42
  IV                              2                              23
D46V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(12Q21.33) MUTATED      2   26
  DEL PEAK 21(12Q21.33) WILD-TYPE    4  130
     clus
vv    DEL PEAK 21(12Q21.33) MUTATED DEL PEAK 21(12Q21.33) WILD-TYPE
  NO                              2                               4
  YES                            26                             130

Clustering(47) Variable = Del Peak 22(14q11.2) mutation analysis
D47V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 22(14Q11.2) MUTATED" 
[1] "hr=" "2.1"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q11.2) MUTATED     39   28
  DEL PEAK 22(14Q11.2) WILD-TYPE   49   46
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  FEMALE                           28                             46
  MALE                             39                             49
D47V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q11.2) MUTATED     63    2
  DEL PEAK 22(14Q11.2) WILD-TYPE   80   11
                                clus
vv                               DEL PEAK 22(14Q11.2) MUTATED
  RECTAL ADENOCARCINOMA                                    63
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               DEL PEAK 22(14Q11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      80
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D47V5, multiclass
    clus
vv   DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  T1                            3                              6
  T2                           11                             18
  T3                           49                             60
  T4                            4                             10
D47V6, multiclass
    clus
vv   DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  N0                           33                             50
  N1                           23                             22
  N2                           11                             21
D47V7, multiclass
     clus
vv    DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  M0                            52                             71
  M1                             8                             14
  M1A                            0                              2
  MX                             6                              7
D47V8, multiclass
     clus
vv    DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  I                             11                             19
  II                            23                             27
  III                           24                             26
  IV                             7                             18
D47V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q11.2) MUTATED      4   63
  DEL PEAK 22(14Q11.2) WILD-TYPE    2   93
     clus
vv    DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  NO                             4                              2
  YES                           63                             93

Clustering(48) Variable = Del Peak 23(14q31.1) mutation analysis
D48V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 23(14Q31.1) MUTATED" 
[1] "hr=" "1.4"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q31.1) MUTATED     41   28
  DEL PEAK 23(14Q31.1) WILD-TYPE   47   46
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  FEMALE                           28                             46
  MALE                             41                             47
D48V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q31.1) MUTATED     65    1
  DEL PEAK 23(14Q31.1) WILD-TYPE   78   12
                                clus
vv                               DEL PEAK 23(14Q31.1) MUTATED
  RECTAL ADENOCARCINOMA                                    65
  RECTAL MUCINOUS ADENOCARCINOMA                            1
                                clus
vv                               DEL PEAK 23(14Q31.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      78
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D48V5, multiclass
    clus
vv   DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  T1                            3                              6
  T2                           10                             19
  T3                           53                             56
  T4                            3                             11
D48V6, multiclass
    clus
vv   DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  N0                           35                             48
  N1                           25                             20
  N2                            9                             23
D48V7, multiclass
     clus
vv    DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  M0                            54                             69
  M1                            10                             12
  M1A                            0                              2
  MX                             4                              9
D48V8, multiclass
     clus
vv    DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  I                             10                             20
  II                            26                             24
  III                           22                             28
  IV                             8                             17
D48V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q31.1) MUTATED      2   67
  DEL PEAK 23(14Q31.1) WILD-TYPE    4   89
     clus
vv    DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  NO                             2                              4
  YES                           67                             89

Clustering(49) Variable = Del Peak 24(15q22.33) mutation analysis
D49V1, survival
                     TCGA-AF-2687                      TCGA-AF-2689 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-G5-6641 
  "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-G5-6641 
  "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-CI-6624                      TCGA-CL-4957 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-6158                      TCGA-DC-6160 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6885                      TCGA-EI-6917 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-G5-6641 
  "DEL PEAK 24(15Q22.33) MUTATED" 
[1] "hr=" "1.4"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(15Q22.33) MUTATED     44   31
  DEL PEAK 24(15Q22.33) WILD-TYPE   44   43
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  FEMALE                            31                              43
  MALE                              44                              44
D49V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(15Q22.33) MUTATED     66    6
  DEL PEAK 24(15Q22.33) WILD-TYPE   77    7
                                clus
vv                               DEL PEAK 24(15Q22.33) MUTATED
  RECTAL ADENOCARCINOMA                                     66
  RECTAL MUCINOUS ADENOCARCINOMA                             6
                                clus
vv                               DEL PEAK 24(15Q22.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       77
  RECTAL MUCINOUS ADENOCARCINOMA                               7
D49V5, multiclass
    clus
vv   DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  T1                             4                               5
  T2                             7                              22
  T3                            60                              49
  T4                             4                              10
D49V6, multiclass
    clus
vv   DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  N0                            34                              49
  N1                            25                              20
  N2                            16                              16
D49V7, multiclass
     clus
vv    DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  M0                             57                              66
  M1                             11                              11
  M1A                             0                               2
  MX                              6                               7
D49V8, multiclass
     clus
vv    DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  I                               8                              22
  II                             27                              23
  III                            27                              23
  IV                             12                              13
D49V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(15Q22.33) MUTATED      5   70
  DEL PEAK 24(15Q22.33) WILD-TYPE    1   86
     clus
vv    DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  NO                              5                               1
  YES                            70                              86

Clustering(50) Variable = Del Peak 25(16p13.3) mutation analysis
D50V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 25(16P13.3) WILD-TYPE" 
[1] "hr=" "8.4"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) MUTATED      7    6
  DEL PEAK 25(16P13.3) WILD-TYPE   81   68
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  FEMALE                            6                             68
  MALE                              7                             81
D50V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) MUTATED     10    2
  DEL PEAK 25(16P13.3) WILD-TYPE  133   11
                                clus
vv                               DEL PEAK 25(16P13.3) MUTATED
  RECTAL ADENOCARCINOMA                                    10
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               DEL PEAK 25(16P13.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     133
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D50V5, multiclass
    clus
vv   DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  T1                            0                              9
  T2                            3                             26
  T3                           10                             99
  T4                            0                             14
D50V6, multiclass
    clus
vv   DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  N0                            8                             75
  N1                            1                             44
  N2                            4                             28
D50V7, multiclass
     clus
vv    DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  M0                            11                            112
  M1                             2                             20
  M1A                            0                              2
  MX                             0                             13
D50V8, multiclass
     clus
vv    DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  I                              1                             29
  II                             8                             42
  III                            2                             48
  IV                             2                             23
D50V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) MUTATED      0   13
  DEL PEAK 25(16P13.3) WILD-TYPE    6  143
     clus
vv    DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  NO                             0                              6
  YES                           13                            143

Clustering(51) Variable = Del Peak 26(16q23.1) mutation analysis
D51V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 26(16Q23.1) MUTATED"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 26(16Q23.1) MUTATED"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 26(16Q23.1) MUTATED"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 26(16Q23.1) WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) MUTATED     12   11
  DEL PEAK 26(16Q23.1) WILD-TYPE   76   63
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  FEMALE                           11                             63
  MALE                             12                             76
D51V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) MUTATED     20    2
  DEL PEAK 26(16Q23.1) WILD-TYPE  123   11
                                clus
vv                               DEL PEAK 26(16Q23.1) MUTATED
  RECTAL ADENOCARCINOMA                                    20
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               DEL PEAK 26(16Q23.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     123
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D51V5, multiclass
    clus
vv   DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  T1                            0                              9
  T2                            4                             25
  T3                           16                             93
  T4                            3                             11
D51V6, multiclass
    clus
vv   DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  N0                           11                             72
  N1                            2                             43
  N2                            9                             23
D51V7, multiclass
     clus
vv    DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  M0                            17                            106
  M1                             4                             18
  M1A                            0                              2
  MX                             2                             11
D51V8, multiclass
     clus
vv    DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  I                              3                             27
  II                             9                             41
  III                            4                             46
  IV                             5                             20
D51V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) MUTATED      1   22
  DEL PEAK 26(16Q23.1) WILD-TYPE    5  134
     clus
vv    DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  NO                             1                              5
  YES                           22                            134

Clustering(52) Variable = Del Peak 27(17p12) mutation analysis
D52V1, survival
                  TCGA-AF-2687                   TCGA-AF-2689 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-2690                   TCGA-AF-2691 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-2692                   TCGA-AF-2693 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-3400                   TCGA-AF-3911 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-6655                   TCGA-AF-6672 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3581                   TCGA-AG-3582 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-3583                   TCGA-AG-3587 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-3599                   TCGA-AG-3726 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-3727                   TCGA-AG-3731 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-3742                   TCGA-AG-3878 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3999                   TCGA-AG-4001 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-4007                   TCGA-AG-4008 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-4022                   TCGA-AG-A002 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A008                   TCGA-AG-A00C 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A00H                   TCGA-AG-A00Y 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A011                   TCGA-AG-A014 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A015                   TCGA-AG-A016 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A01J                   TCGA-AG-A01L 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A01N                   TCGA-AG-A01W 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A01Y                   TCGA-AG-A020 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A023                   TCGA-AG-A025 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A026                   TCGA-AG-A02G 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A02N                   TCGA-AG-A02X 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A032                   TCGA-AH-6544 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AH-6547                   TCGA-AH-6643 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AH-6644                   TCGA-AH-6897 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AH-6903                   TCGA-BM-6198 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-CI-6619                   TCGA-CI-6620 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-CI-6622                   TCGA-CI-6623 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CI-6624                   TCGA-CL-4957 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-CL-5917                   TCGA-CL-5918 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-4745                   TCGA-DC-4749 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-5337                   TCGA-DC-5869 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6154                   TCGA-DC-6155 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-6156                   TCGA-DC-6157 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6158                   TCGA-DC-6160 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-6681                   TCGA-DC-6682 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-6683                   TCGA-DT-5265 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DY-A0XA                   TCGA-DY-A1DC 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DY-A1DD                   TCGA-DY-A1DE 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DY-A1DF                   TCGA-DY-A1DG 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DY-A1H8                   TCGA-EF-5830 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EF-5831                   TCGA-EI-6506 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6507                   TCGA-EI-6508 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6509                   TCGA-EI-6510 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6511                   TCGA-EI-6512 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6513                   TCGA-EI-6514 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6881                   TCGA-EI-6882 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6883                   TCGA-EI-6884 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6885                   TCGA-EI-6917 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-7002                   TCGA-EI-7004 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6465                   TCGA-F5-6571 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6702                   TCGA-F5-6810 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6811                   TCGA-F5-6812 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6813                   TCGA-F5-6814 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6861                   TCGA-F5-6863 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6864                   TCGA-G5-6233 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G5-6235                   TCGA-G5-6572 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G5-6641 
"DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-2690                   TCGA-AF-2691 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-2692                   TCGA-AF-2693 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-3400                   TCGA-AF-3911 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-6655                   TCGA-AF-6672 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3581                   TCGA-AG-3582 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-3583                   TCGA-AG-3587 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-3599                   TCGA-AG-3726 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-3727                   TCGA-AG-3731 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-3742                   TCGA-AG-3878 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3999                   TCGA-AG-4001 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-4007                   TCGA-AG-4008 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-4022                   TCGA-AG-A002 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A008                   TCGA-AG-A00C 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A00H                   TCGA-AG-A00Y 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A011                   TCGA-AG-A014 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A015                   TCGA-AG-A016 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A01J                   TCGA-AG-A01L 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A01N                   TCGA-AG-A01W 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A01Y                   TCGA-AG-A020 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A023                   TCGA-AG-A025 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A026                   TCGA-AG-A02G 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A02N                   TCGA-AG-A02X 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A032                   TCGA-AH-6544 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AH-6547                   TCGA-AH-6643 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AH-6644                   TCGA-AH-6897 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AH-6903                   TCGA-BM-6198 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-CI-6619                   TCGA-CI-6620 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-CI-6622                   TCGA-CI-6623 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CI-6624                   TCGA-CL-4957 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-CL-5917                   TCGA-CL-5918 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-4745                   TCGA-DC-4749 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-5337                   TCGA-DC-5869 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6154                   TCGA-DC-6155 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-6156                   TCGA-DC-6157 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6158                   TCGA-DC-6160 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-6681                   TCGA-DC-6682 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-6683                   TCGA-DT-5265 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DY-A0XA                   TCGA-DY-A1DC 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DY-A1DD                   TCGA-DY-A1DE 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DY-A1DF                   TCGA-DY-A1DG 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DY-A1H8                   TCGA-EF-5830 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EF-5831                   TCGA-EI-6506 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6507                   TCGA-EI-6508 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6509                   TCGA-EI-6510 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6511                   TCGA-EI-6512 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6513                   TCGA-EI-6514 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6881                   TCGA-EI-6882 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6883                   TCGA-EI-6884 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6885                   TCGA-EI-6917 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-7002                   TCGA-EI-7004 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6465                   TCGA-F5-6571 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6702                   TCGA-F5-6810 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6811                   TCGA-F5-6812 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6813                   TCGA-F5-6814 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6861                   TCGA-F5-6863 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6864                   TCGA-G5-6233 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G5-6235                   TCGA-G5-6572 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G5-6641 
"DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-2690                   TCGA-AF-2691 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-2692                   TCGA-AF-2693 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-3400                   TCGA-AF-3911 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AF-6655                   TCGA-AF-6672 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3581                   TCGA-AG-3582 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-3583                   TCGA-AG-3587 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-3599                   TCGA-AG-3726 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-3727                   TCGA-AG-3731 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-3742                   TCGA-AG-3878 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3999                   TCGA-AG-4001 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-4007                   TCGA-AG-4008 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-4022                   TCGA-AG-A002 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A008                   TCGA-AG-A00C 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A00H                   TCGA-AG-A00Y 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A011                   TCGA-AG-A014 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A015                   TCGA-AG-A016 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A01J                   TCGA-AG-A01L 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A01N                   TCGA-AG-A01W 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A01Y                   TCGA-AG-A020 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A023                   TCGA-AG-A025 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A026                   TCGA-AG-A02G 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A02N                   TCGA-AG-A02X 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AG-A032                   TCGA-AH-6544 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AH-6547                   TCGA-AH-6643 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AH-6644                   TCGA-AH-6897 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-AH-6903                   TCGA-BM-6198 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-CI-6619                   TCGA-CI-6620 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-CI-6622                   TCGA-CI-6623 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CI-6624                   TCGA-CL-4957 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-CL-5917                   TCGA-CL-5918 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-4745                   TCGA-DC-4749 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-5337                   TCGA-DC-5869 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6154                   TCGA-DC-6155 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-6156                   TCGA-DC-6157 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6158                   TCGA-DC-6160 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-6681                   TCGA-DC-6682 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DC-6683                   TCGA-DT-5265 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DY-A0XA                   TCGA-DY-A1DC 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DY-A1DD                   TCGA-DY-A1DE 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DY-A1DF                   TCGA-DY-A1DG 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-DY-A1H8                   TCGA-EF-5830 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EF-5831                   TCGA-EI-6506 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6507                   TCGA-EI-6508 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6509                   TCGA-EI-6510 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6511                   TCGA-EI-6512 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6513                   TCGA-EI-6514 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6881                   TCGA-EI-6882 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6883                   TCGA-EI-6884 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-EI-6885                   TCGA-EI-6917 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-7002                   TCGA-EI-7004 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6465                   TCGA-F5-6571 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6702                   TCGA-F5-6810 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6811                   TCGA-F5-6812 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6813                   TCGA-F5-6814 
  "DEL PEAK 27(17P12) MUTATED"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6861                   TCGA-F5-6863 
"DEL PEAK 27(17P12) WILD-TYPE"   "DEL PEAK 27(17P12) MUTATED" 
                  TCGA-F5-6864                   TCGA-G5-6233 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G5-6235                   TCGA-G5-6572 
  "DEL PEAK 27(17P12) MUTATED" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G5-6641 
"DEL PEAK 27(17P12) WILD-TYPE" 
[1] "hr=" "1.7"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 27(17P12) MUTATED     59   51
  DEL PEAK 27(17P12) WILD-TYPE   29   23
        clus
vv       DEL PEAK 27(17P12) MUTATED DEL PEAK 27(17P12) WILD-TYPE
  FEMALE                         51                           23
  MALE                           59                           29
D52V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 27(17P12) MUTATED     99    6
  DEL PEAK 27(17P12) WILD-TYPE   44    7
                                clus
vv                               DEL PEAK 27(17P12) MUTATED
  RECTAL ADENOCARCINOMA                                  99
  RECTAL MUCINOUS ADENOCARCINOMA                          6
                                clus
vv                               DEL PEAK 27(17P12) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    44
  RECTAL MUCINOUS ADENOCARCINOMA                            7
D52V5, multiclass
    clus
vv   DEL PEAK 27(17P12) MUTATED DEL PEAK 27(17P12) WILD-TYPE
  T1                          2                            7
  T2                         19                           10
  T3                         77                           32
  T4                         12                            2
D52V6, multiclass
    clus
vv   DEL PEAK 27(17P12) MUTATED DEL PEAK 27(17P12) WILD-TYPE
  N0                         56                           27
  N1                         30                           15
  N2                         23                            9
D52V7, multiclass
     clus
vv    DEL PEAK 27(17P12) MUTATED DEL PEAK 27(17P12) WILD-TYPE
  M0                          83                           40
  M1                          16                            6
  M1A                          1                            1
  MX                           9                            4
D52V8, multiclass
     clus
vv    DEL PEAK 27(17P12) MUTATED DEL PEAK 27(17P12) WILD-TYPE
  I                           16                           14
  II                          38                           12
  III                         34                           16
  IV                          18                            7
D52V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 27(17P12) MUTATED      4  106
  DEL PEAK 27(17P12) WILD-TYPE    2   50
     clus
vv    DEL PEAK 27(17P12) MUTATED DEL PEAK 27(17P12) WILD-TYPE
  NO                           4                            2
  YES                        106                           50

Clustering(53) Variable = Del Peak 28(17p11.2) mutation analysis
D53V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "DEL PEAK 28(17P11.2) MUTATED"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 28(17P11.2) WILD-TYPE"   "DEL PEAK 28(17P11.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 28(17P11.2) MUTATED" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 28(17P11.2) WILD-TYPE" 
[1] "hr=" "1.2"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(17P11.2) MUTATED     53   49
  DEL PEAK 28(17P11.2) WILD-TYPE   35   25
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  FEMALE                           49                             25
  MALE                             53                             35
D53V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(17P11.2) MUTATED     92    5
  DEL PEAK 28(17P11.2) WILD-TYPE   51    8
                                clus
vv                               DEL PEAK 28(17P11.2) MUTATED
  RECTAL ADENOCARCINOMA                                    92
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               DEL PEAK 28(17P11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      51
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D53V5, multiclass
    clus
vv   DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  T1                            2                              7
  T2                           19                             10
  T3                           71                             38
  T4                           10                              4
D53V6, multiclass
    clus
vv   DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  N0                           51                             32
  N1                           31                             14
  N2                           20                             12
D53V7, multiclass
     clus
vv    DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  M0                            78                             45
  M1                            15                              7
  M1A                            0                              2
  MX                             8                              5
D53V8, multiclass
     clus
vv    DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  I                             16                             14
  II                            33                             17
  III                           34                             16
  IV                            16                              9
D53V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(17P11.2) MUTATED      3   99
  DEL PEAK 28(17P11.2) WILD-TYPE    3   57
     clus
vv    DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  NO                             3                              3
  YES                           99                             57

Clustering(54) Variable = Del Peak 29(17q25.3) mutation analysis
D54V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 29(17Q25.3) WILD-TYPE" 
[1] "hr=" "3.8"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(17Q25.3) MUTATED     17    7
  DEL PEAK 29(17Q25.3) WILD-TYPE   71   67
        clus
vv       DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  FEMALE                            7                             67
  MALE                             17                             71
D54V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(17Q25.3) MUTATED     21    2
  DEL PEAK 29(17Q25.3) WILD-TYPE  122   11
                                clus
vv                               DEL PEAK 29(17Q25.3) MUTATED
  RECTAL ADENOCARCINOMA                                    21
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               DEL PEAK 29(17Q25.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     122
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D54V5, multiclass
    clus
vv   DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  T1                            0                              9
  T2                            7                             22
  T3                           15                             94
  T4                            2                             12
D54V6, multiclass
    clus
vv   DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  N0                           14                             69
  N1                            6                             39
  N2                            4                             28
D54V7, multiclass
     clus
vv    DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  M0                            21                            102
  M1                             0                             22
  M1A                            0                              2
  MX                             2                             11
D54V8, multiclass
     clus
vv    DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  I                              5                             25
  II                             9                             41
  III                            9                             41
  IV                             1                             24
D54V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(17Q25.3) MUTATED      2   22
  DEL PEAK 29(17Q25.3) WILD-TYPE    4  134
     clus
vv    DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  NO                             2                              4
  YES                           22                            134

Clustering(55) Variable = Del Peak 30(18q21.2) mutation analysis
D55V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-G5-6641 
  "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-G5-6641 
  "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "DEL PEAK 30(18Q21.2) MUTATED" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 30(18Q21.2) WILD-TYPE"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 30(18Q21.2) MUTATED"   "DEL PEAK 30(18Q21.2) MUTATED" 
                    TCGA-G5-6641 
  "DEL PEAK 30(18Q21.2) MUTATED" 
[1] "hr=" "1.6"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(18Q21.2) MUTATED     78   65
  DEL PEAK 30(18Q21.2) WILD-TYPE   10    9
        clus
vv       DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  FEMALE                           65                              9
  MALE                             78                             10
D55V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(18Q21.2) MUTATED    126   12
  DEL PEAK 30(18Q21.2) WILD-TYPE   17    1
                                clus
vv                               DEL PEAK 30(18Q21.2) MUTATED
  RECTAL ADENOCARCINOMA                                   126
  RECTAL MUCINOUS ADENOCARCINOMA                           12
                                clus
vv                               DEL PEAK 30(18Q21.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      17
  RECTAL MUCINOUS ADENOCARCINOMA                              1
D55V5, multiclass
    clus
vv   DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  T1                            5                              4
  T2                           23                              6
  T3                          101                              8
  T4                           13                              1
D55V6, multiclass
    clus
vv   DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  N0                           68                             15
  N1                           43                              2
  N2                           30                              2
D55V7, multiclass
     clus
vv    DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  M0                           105                             18
  M1                            22                              0
  M1A                            2                              0
  MX                            12                              1
D55V8, multiclass
     clus
vv    DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  I                             22                              8
  II                            45                              5
  III                           45                              5
  IV                            25                              0
D55V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(18Q21.2) MUTATED      6  137
  DEL PEAK 30(18Q21.2) WILD-TYPE    0   19
     clus
vv    DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  NO                             6                              0
  YES                          137                             19

Clustering(56) Variable = Del Peak 31(18q22.1) mutation analysis
D56V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-G5-6641 
  "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-G5-6641 
  "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A011                     TCGA-AG-A014 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
  "DEL PEAK 31(18Q22.1) MUTATED" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 31(18Q22.1) WILD-TYPE"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
  "DEL PEAK 31(18Q22.1) MUTATED"   "DEL PEAK 31(18Q22.1) MUTATED" 
                    TCGA-G5-6641 
  "DEL PEAK 31(18Q22.1) MUTATED" 
[1] "hr=" "1.6"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(18Q22.1) MUTATED     74   64
  DEL PEAK 31(18Q22.1) WILD-TYPE   14   10
        clus
vv       DEL PEAK 31(18Q22.1) MUTATED DEL PEAK 31(18Q22.1) WILD-TYPE
  FEMALE                           64                             10
  MALE                             74                             14
D56V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(18Q22.1) MUTATED    124   10
  DEL PEAK 31(18Q22.1) WILD-TYPE   19    3
                                clus
vv                               DEL PEAK 31(18Q22.1) MUTATED
  RECTAL ADENOCARCINOMA                                   124
  RECTAL MUCINOUS ADENOCARCINOMA                           10
                                clus
vv                               DEL PEAK 31(18Q22.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      19
  RECTAL MUCINOUS ADENOCARCINOMA                              3
D56V5, multiclass
    clus
vv   DEL PEAK 31(18Q22.1) MUTATED DEL PEAK 31(18Q22.1) WILD-TYPE
  T1                            5                              4
  T2                           23                              6
  T3                           96                             13
  T4                           13                              1
D56V6, multiclass
    clus
vv   DEL PEAK 31(18Q22.1) MUTATED DEL PEAK 31(18Q22.1) WILD-TYPE
  N0                           67                             16
  N1                           40                              5
  N2                           29                              3
D56V7, multiclass
     clus
vv    DEL PEAK 31(18Q22.1) MUTATED DEL PEAK 31(18Q22.1) WILD-TYPE
  M0                           102                             21
  M1                            21                              1
  M1A                            2                              0
  MX                            11                              2
D56V8, multiclass
     clus
vv    DEL PEAK 31(18Q22.1) MUTATED DEL PEAK 31(18Q22.1) WILD-TYPE
  I                             22                              8
  II                            44                              6
  III                           42                              8
  IV                            24                              1
D56V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(18Q22.1) MUTATED      6  132
  DEL PEAK 31(18Q22.1) WILD-TYPE    0   24
     clus
vv    DEL PEAK 31(18Q22.1) MUTATED DEL PEAK 31(18Q22.1) WILD-TYPE
  NO                             6                              0
  YES                          132                             24

Clustering(57) Variable = Del Peak 32(19p13.3) mutation analysis
D57V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 32(19P13.3) WILD-TYPE" 
[1] "hr=" "1.2"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(19P13.3) MUTATED     21   17
  DEL PEAK 32(19P13.3) WILD-TYPE   67   57
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  FEMALE                           17                             57
  MALE                             21                             67
D57V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(19P13.3) MUTATED     34    2
  DEL PEAK 32(19P13.3) WILD-TYPE  109   11
                                clus
vv                               DEL PEAK 32(19P13.3) MUTATED
  RECTAL ADENOCARCINOMA                                    34
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               DEL PEAK 32(19P13.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     109
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D57V5, multiclass
    clus
vv   DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  T1                            0                              9
  T2                            7                             22
  T3                           29                             80
  T4                            2                             12
D57V6, multiclass
    clus
vv   DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  N0                           17                             66
  N1                           13                             32
  N2                            8                             24
D57V7, multiclass
     clus
vv    DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  M0                            29                             94
  M1                             8                             14
  M1A                            0                              2
  MX                             1                             12
D57V8, multiclass
     clus
vv    DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  I                              6                             24
  II                            12                             38
  III                           11                             39
  IV                             8                             17
D57V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(19P13.3) MUTATED      1   37
  DEL PEAK 32(19P13.3) WILD-TYPE    5  119
     clus
vv    DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  NO                             1                              5
  YES                           37                            119

Clustering(58) Variable = Del Peak 33(20p12.1) mutation analysis
D58V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 33(20P12.1) MUTATED"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 33(20P12.1) WILD-TYPE"   "DEL PEAK 33(20P12.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 33(20P12.1) MUTATED" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 33(20P12.1) MUTATED" 
[1] "hr=" "2.5"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(20P12.1) MUTATED     29   31
  DEL PEAK 33(20P12.1) WILD-TYPE   59   43
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  FEMALE                           31                             43
  MALE                             29                             59
D58V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(20P12.1) MUTATED     55    5
  DEL PEAK 33(20P12.1) WILD-TYPE   88    8
                                clus
vv                               DEL PEAK 33(20P12.1) MUTATED
  RECTAL ADENOCARCINOMA                                    55
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               DEL PEAK 33(20P12.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      88
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D58V5, multiclass
    clus
vv   DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  T1                            2                              7
  T2                           11                             18
  T3                           42                             67
  T4                            5                              9
D58V6, multiclass
    clus
vv   DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  N0                           30                             53
  N1                           17                             28
  N2                           13                             19
D58V7, multiclass
     clus
vv    DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  M0                            47                             76
  M1                            10                             12
  M1A                            0                              2
  MX                             3                             10
D58V8, multiclass
     clus
vv    DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  I                              9                             21
  II                            19                             31
  III                           20                             30
  IV                             9                             16
D58V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(20P12.1) MUTATED      0   60
  DEL PEAK 33(20P12.1) WILD-TYPE    6   96
     clus
vv    DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  NO                             0                              6
  YES                           60                             96

Clustering(59) Variable = Del Peak 34(20p12.1) mutation analysis
D59V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-3727                     TCGA-AG-3731 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 34(20P12.1) MUTATED" 
[1] "hr=" "2.5"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(20P12.1) MUTATED     29   31
  DEL PEAK 34(20P12.1) WILD-TYPE   59   43
        clus
vv       DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  FEMALE                           31                             43
  MALE                             29                             59
D59V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(20P12.1) MUTATED     55    5
  DEL PEAK 34(20P12.1) WILD-TYPE   88    8
                                clus
vv                               DEL PEAK 34(20P12.1) MUTATED
  RECTAL ADENOCARCINOMA                                    55
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               DEL PEAK 34(20P12.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      88
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D59V5, multiclass
    clus
vv   DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  T1                            2                              7
  T2                           11                             18
  T3                           42                             67
  T4                            5                              9
D59V6, multiclass
    clus
vv   DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  N0                           30                             53
  N1                           17                             28
  N2                           13                             19
D59V7, multiclass
     clus
vv    DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  M0                            47                             76
  M1                            10                             12
  M1A                            0                              2
  MX                             3                             10
D59V8, multiclass
     clus
vv    DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  I                              9                             21
  II                            19                             31
  III                           20                             30
  IV                             9                             16
D59V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(20P12.1) MUTATED      0   60
  DEL PEAK 34(20P12.1) WILD-TYPE    6   96
     clus
vv    DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE
  NO                             0                              6
  YES                           60                             96

Clustering(60) Variable = Del Peak 35(21q11.2) mutation analysis
D60V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-3581                     TCGA-AG-3582 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3726 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-DC-6158                     TCGA-DC-6160 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-DC-6683                     TCGA-DT-5265 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-EF-5831                     TCGA-EI-6506 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-EI-6513                     TCGA-EI-6514 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
  "DEL PEAK 35(21Q11.2) MUTATED" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
  "DEL PEAK 35(21Q11.2) MUTATED"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 35(21Q11.2) WILD-TYPE"   "DEL PEAK 35(21Q11.2) MUTATED" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6641 
  "DEL PEAK 35(21Q11.2) MUTATED" 
[1] "hr=" "1"  
D60V2, continuous
D60V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(21Q11.2) MUTATED     40   30
  DEL PEAK 35(21Q11.2) WILD-TYPE   48   44
        clus
vv       DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  FEMALE                           30                             44
  MALE                             40                             48
D60V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(21Q11.2) MUTATED     63    3
  DEL PEAK 35(21Q11.2) WILD-TYPE   80   10
                                clus
vv                               DEL PEAK 35(21Q11.2) MUTATED
  RECTAL ADENOCARCINOMA                                    63
  RECTAL MUCINOUS ADENOCARCINOMA                            3
                                clus
vv                               DEL PEAK 35(21Q11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      80
  RECTAL MUCINOUS ADENOCARCINOMA                             10
D60V5, multiclass
    clus
vv   DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  T1                            1                              8
  T2                           16                             13
  T3                           47                             62
  T4                            6                              8
D60V6, multiclass
    clus
vv   DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  N0                           33                             50
  N1                           24                             21
  N2                           13                             19
D60V7, multiclass
     clus
vv    DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  M0                            55                             68
  M1                             9                             13
  M1A                            0                              2
  MX                             6                              7
D60V8, multiclass
     clus
vv    DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  I                             10                             20
  II                            23                             27
  III                           24                             26
  IV                            10                             15
D60V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(21Q11.2) MUTATED      3   67
  DEL PEAK 35(21Q11.2) WILD-TYPE    3   89
     clus
vv    DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  NO                             3                              3
  YES                           67                             89

Clustering(61) Variable = Del Peak 36(22q13.31) mutation analysis
D61V1, survival
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6641 
  "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6641 
  "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-3581                      TCGA-AG-3582 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-3583                      TCGA-AG-3587 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AG-A032                      TCGA-AH-6544 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CI-6619                      TCGA-CI-6620 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DC-6683                      TCGA-DT-5265 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6881                      TCGA-EI-6882 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
  "DEL PEAK 36(22Q13.31) MUTATED" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
  "DEL PEAK 36(22Q13.31) MUTATED"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"DEL PEAK 36(22Q13.31) WILD-TYPE"   "DEL PEAK 36(22Q13.31) MUTATED" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6641 
  "DEL PEAK 36(22Q13.31) MUTATED" 
[1] "hr=" "3.2"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 36(22Q13.31) MUTATED     39   27
  DEL PEAK 36(22Q13.31) WILD-TYPE   49   47
        clus
vv       DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  FEMALE                            27                              47
  MALE                              39                              49
D61V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 36(22Q13.31) MUTATED     59    4
  DEL PEAK 36(22Q13.31) WILD-TYPE   84    9
                                clus
vv                               DEL PEAK 36(22Q13.31) MUTATED
  RECTAL ADENOCARCINOMA                                     59
  RECTAL MUCINOUS ADENOCARCINOMA                             4
                                clus
vv                               DEL PEAK 36(22Q13.31) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       84
  RECTAL MUCINOUS ADENOCARCINOMA                               9
D61V5, multiclass
    clus
vv   DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  T1                             1                               8
  T2                            12                              17
  T3                            48                              61
  T4                             5                               9
D61V6, multiclass
    clus
vv   DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  N0                            27                              56
  N1                            27                              18
  N2                            11                              21
D61V7, multiclass
     clus
vv    DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  M0                             46                              77
  M1                             12                              10
  M1A                             0                               2
  MX                              7                               6
D61V8, multiclass
     clus
vv    DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  I                               9                              21
  II                             19                              31
  III                            23                              27
  IV                             13                              12
D61V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 36(22Q13.31) MUTATED      3   63
  DEL PEAK 36(22Q13.31) WILD-TYPE    3   93
     clus
vv    DEL PEAK 36(22Q13.31) MUTATED DEL PEAK 36(22Q13.31) WILD-TYPE
  NO                              3                               3
  YES                            63                              93

Clustering(62) Variable = Del Peak 37(Xp22.33) mutation analysis
D62V1, survival
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 37(XP22.33) MUTATED"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 37(XP22.33) MUTATED"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "DEL PEAK 37(XP22.33) MUTATED"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 37(XP22.33) MUTATED"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 37(XP22.33) MUTATED"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "DEL PEAK 37(XP22.33) MUTATED"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 37(XP22.33) MUTATED"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
  "DEL PEAK 37(XP22.33) MUTATED"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-DC-6156                     TCGA-DC-6157 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
  "DEL PEAK 37(XP22.33) MUTATED" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
  "DEL PEAK 37(XP22.33) MUTATED"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 37(XP22.33) WILD-TYPE"   "DEL PEAK 37(XP22.33) MUTATED" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 37(XP22.33) WILD-TYPE" 
[1] "hr=" "1.5"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(XP22.33) MUTATED     17   16
  DEL PEAK 37(XP22.33) WILD-TYPE   71   58
        clus
vv       DEL PEAK 37(XP22.33) MUTATED DEL PEAK 37(XP22.33) WILD-TYPE
  FEMALE                           16                             58
  MALE                             17                             71
D62V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(XP22.33) MUTATED     27    3
  DEL PEAK 37(XP22.33) WILD-TYPE  116   10
                                clus
vv                               DEL PEAK 37(XP22.33) MUTATED
  RECTAL ADENOCARCINOMA                                    27
  RECTAL MUCINOUS ADENOCARCINOMA                            3
                                clus
vv                               DEL PEAK 37(XP22.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     116
  RECTAL MUCINOUS ADENOCARCINOMA                             10
D62V5, multiclass
    clus
vv   DEL PEAK 37(XP22.33) MUTATED DEL PEAK 37(XP22.33) WILD-TYPE
  T1                            1                              8
  T2                            8                             21
  T3                           22                             87
  T4                            2                             12
D62V6, multiclass
    clus
vv   DEL PEAK 37(XP22.33) MUTATED DEL PEAK 37(XP22.33) WILD-TYPE
  N0                           18                             65
  N1                            8                             37
  N2                            7                             25
D62V7, multiclass
     clus
vv    DEL PEAK 37(XP22.33) MUTATED DEL PEAK 37(XP22.33) WILD-TYPE
  M0                            24                             99
  M1                             5                             17
  M1A                            1                              1
  MX                             2                             11
D62V8, multiclass
     clus
vv    DEL PEAK 37(XP22.33) MUTATED DEL PEAK 37(XP22.33) WILD-TYPE
  I                              6                             24
  II                            12                             38
  III                            9                             41
  IV                             5                             20
D62V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(XP22.33) MUTATED      1   32
  DEL PEAK 37(XP22.33) WILD-TYPE    5  124
     clus
vv    DEL PEAK 37(XP22.33) MUTATED DEL PEAK 37(XP22.33) WILD-TYPE
  NO                             1                              5
  YES                           32                            124
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                     "HISTOLOGICAL.TYPE" 
                                      V5 
                           "PATHOLOGY.T" 
                                      V6 
                           "PATHOLOGY.N" 
                                      V7 
                   "PATHOLOGICSPREAD(M)" 
                                      V8 
                           "TUMOR.STAGE" 
                                      V9 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
> q(save="no")
