Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_12_21 analyses Run

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF

BLCA	153	108	137	100	138	0	96	0	124	54	28
BRCA	929	866	874	0	888	529	841	0	868	408	507
CESC	134	32	102	0	122	0	97	0	122	0	36
COAD	423	423	413	69	420	155	192	0	407	269	155
COADREAD	592	591	575	104	582	224	264	0	550	399	224
DLBC	28	0	18	0	17	0	0	0	16	0	0
ESCA	20	0	0	0	0	0	0	0	0	0	0
GBM	598	565	563	0	405	542	161	491	0	214	291
HNSC	343	315	306	96	310	0	303	0	309	212	306
KICH	66	0	65	0	65	0	65	0	0	0	0
KIRC	502	502	493	0	500	72	469	0	480	454	293
KIRP	149	103	103	0	103	16	63	0	103	0	100
LAML	202	200	0	0	194	0	179	0	187	0	199
LGG	222	208	180	0	176	27	110	0	180	0	34
LIHC	99	62	97	0	98	0	17	0	96	0	0
LUAD	508	333	356	0	430	32	353	0	365	237	229
LUSC	389	327	343	0	359	154	223	0	332	195	178
OV	592	580	566	0	584	574	297	570	454	412	316
PAAD	57	0	48	0	40	0	0	0	34	0	34
PANCAN12	5320	4838	4706	406	4890	2181	3303	1061	4154	2785	2819
PANCAN18	6851	5815	6071	601	6151	2224	4242	1061	5330	3173	3728
PRAD	180	148	171	0	172	0	140	0	170	0	83
READ	169	168	162	35	162	69	72	0	143	130	69
SARC	52	0	29	0	29	0	0	0	29	0	0
SKCM	288	138	273	101	253	0	247	0	240	164	253
STAD	257	162	237	0	145	0	43	0	134	0	116
THCA	435	218	401	94	412	0	379	0	349	224	323
UCEC	512	451	493	106	500	54	333	0	485	200	248
Totals	7307	5909	6430	601	6522	2224	4680	1061	5627	3173	3798