		Clinical Features	Time to Death		AGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		HISTOLOGICAL.TYPE		PATHOLOGY.T		PATHOLOGY.N		PATHOLOGICSPREAD(M)		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NUMBERPACKYEARSSMOKED		STOPPEDSMOKINGYEAR		TOBACCOSMOKINGHISTORYINDICATOR		YEAROFTOBACCOSMOKINGONSET	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q
1p gain	43 (13%)	284	0.91925	1	0.00041974	0.443	1	1	0.49174	1	0.98387	1	0.78634	1	0.00098872	1	0.79771	1	0.00038247	0.404	0.49133	1	0.66627	1	0.712	1	0.38684	1	0.63211	1
1q gain	127 (39%)	200	0.79622	1	0.26265	1	0.57106	1	0.51202	1	0.52831	1	0.29941	1	0.026764	1	0.2868	1	0.026071	1	0.483	1	0.97387	1	0.72594	1	0.41615	1	0.70927	1
2p gain	41 (13%)	286	0.081649	1	0.054814	1	0.043131	1	0.85091	1	0.68282	1	0.10796	1	0.76646	1	0.092563	1	0.22013	1	1	1	0.56279	1	0.061662	1	0.073576	1	0.64505	1
2q gain	33 (10%)	294	0.18767	1	0.20883	1	0.27381	1	NA	NA	0.47188	1	0.41594	1	0.93172	1	0.066576	1	0.27763	1	0.70583	1	0.55303	1	0.99715	1	0.17353	1	0.85992	1
3p gain	10 (3%)	317	0.11677	1	0.60965	1	0.75971	1	NA	NA	0.96439	1	0.068995	1	0.33618	1	0.57655	1	0.25684	1	0.47285	1	0.75432	1	0.49531	1	0.4004	1	0.22827	1
3q gain	20 (6%)	307	0.1223	1	0.73048	1	1	1	NA	NA	0.93006	1	0.80422	1	0.21037	1	0.76213	1	0.52748	1	0.35008	1	0.84843	1	0.33612	1	0.42594	1	0.055875	1
4p gain	24 (7%)	303	0.6712	1	0.018298	1	0.20519	1	NA	NA	0.32837	1	0.56842	1	0.95318	1	0.073242	1	0.29654	1	1	1	0.039963	1	0.50393	1	0.3547	1	0.93509	1
4q gain	9 (3%)	318	0.57624	1	0.69151	1	0.30889	1	NA	NA	0.038635	1	0.26037	1	0.26589	1	0.43133	1	0.54826	1	0.43747	1	0.013812	1	0.42052	1	0.3426	1	0.19957	1
5p gain	124 (38%)	203	0.50275	1	0.16367	1	0.81964	1	0.78616	1	0.36715	1	0.75005	1	0.73081	1	0.61102	1	0.85545	1	0.15168	1	0.048441	1	0.029715	1	0.37288	1	0.88532	1
5q gain	39 (12%)	288	0.68654	1	0.75769	1	0.39557	1	NA	NA	0.79911	1	0.82169	1	0.79773	1	0.56653	1	0.78927	1	0.074594	1	0.3424	1	0.6385	1	0.31752	1	0.29328	1
6p gain	47 (14%)	280	0.81754	1	0.93103	1	0.52818	1	0.90175	1	0.58439	1	0.41261	1	0.22357	1	0.84667	1	0.92649	1	0.74996	1	0.96796	1	0.86093	1	0.41528	1	0.098837	1
6q gain	10 (3%)	317	0.44486	1	0.4338	1	0.025074	1	NA	NA	0.99281	1	0.93537	1	0.80828	1	0.57655	1	0.50008	1	1	1	0.97317	1	0.77412	1	0.14791	1	0.59117	1
7p gain	113 (35%)	214	0.23722	1	0.17568	1	0.64166	1	0.19258	1	0.53503	1	0.12673	1	0.015698	1	0.19909	1	0.063875	1	0.46907	1	0.67413	1	0.70193	1	0.47261	1	0.97649	1
7q gain	81 (25%)	246	0.87784	1	0.052494	1	0.44047	1	0.8196	1	0.61364	1	0.40187	1	0.25151	1	0.081968	1	0.056106	1	0.59548	1	0.96545	1	0.73132	1	0.89176	1	0.79672	1
8p gain	39 (12%)	288	0.2656	1	0.0013036	1	0.30418	1	NA	NA	0.81364	1	0.1704	1	0.77233	1	0.64368	1	1	1	0.71837	1	0.51514	1	0.085595	1	0.035718	1	0.024691	1
8q gain	101 (31%)	226	0.99973	1	0.003621	1	0.3367	1	0.32137	1	0.5387	1	0.52748	1	0.28781	1	0.42379	1	0.69621	1	0.62748	1	0.57751	1	0.20855	1	0.11123	1	0.039876	1
9p gain	9 (3%)	318	0.19892	1	0.27736	1	0.73651	1	NA	NA	0.55182	1	0.5415	1	0.3473	1	0.66955	1	0.93967	1	1	1	0.28874	1	0.03085	1	0.24827	1	0.51958	1
9q gain	4 (1%)	323	0.05908	1	0.28761	1	1	1	NA	NA	0.99562	1	1	1	1	1	1	1	0.85297	1	1	1	0.63359	1	0.27425	1	1	1	0.75834	1
10p gain	35 (11%)	292	0.9758	1	0.37076	1	0.1526	1	0.81966	1	0.56367	1	0.52969	1	0.19639	1	0.90087	1	0.44278	1	0.70792	1	0.0437	1	0.063552	1	0.002155	1	0.51156	1
10q gain	20 (6%)	307	0.8867	1	0.95735	1	0.2459	1	NA	NA	0.34859	1	0.16659	1	0.1755	1	0.32265	1	0.15492	1	1	1	0.13207	1	0.51305	1	0.059214	1	0.27532	1
11p gain	27 (8%)	300	0.51316	1	0.038291	1	0.31436	1	0.72028	1	0.75385	1	0.46392	1	0.32754	1	1	1	0.22465	1	0.67532	1	0.32817	1	0.40012	1	0.61244	1	0.68348	1
11q gain	38 (12%)	289	0.35506	1	0.0001178	0.125	0.11864	1	0.75146	1	0.74614	1	0.24034	1	0.48862	1	0.61984	1	0.12426	1	0.2691	1	0.16875	1	0.0016619	1	0.035742	1	0.12421	1
12p gain	41 (13%)	286	0.84557	1	0.0025391	1	0.40765	1	NA	NA	0.55823	1	0.28825	1	0.10569	1	1	1	0.078935	1	1	1	0.60841	1	0.087912	1	0.062552	1	0.10436	1
12q gain	36 (11%)	291	0.6941	1	0.0042788	1	0.47973	1	NA	NA	0.47975	1	0.30007	1	0.34398	1	0.7193	1	0.23385	1	0.7098	1	0.035579	1	0.10421	1	0.042066	1	0.0060049	1
13q gain	15 (5%)	312	0.58785	1	0.56372	1	1	1	NA	NA	0.98009	1	0.083365	1	0.41101	1	0.1113	1	0.45172	1	1	1	0.76678	1	0.39481	1	0.35448	1	0.75045	1
14q gain	36 (11%)	291	0.34779	1	0.34606	1	0.28843	1	0.90089	1	0.34813	1	0.52763	1	0.21811	1	0.68191	1	0.60732	1	0.14528	1	0.29224	1	0.75018	1	0.70182	1	0.51267	1
15q gain	10 (3%)	317	0.28353	1	0.40204	1	1	1	NA	NA	0.10808	1	0.62482	1	0.26589	1	0.43133	1	0.17591	1	1	1	0.80653	1	0.54951	1	0.13626	1	0.93148	1
16p gain	45 (14%)	282	0.47099	1	0.19422	1	0.87279	1	0.31425	1	0.68549	1	0.70037	1	0.44919	1	0.3263	1	0.49573	1	0.74543	1	0.31602	1	0.10685	1	0.019888	1	0.77923	1
16q gain	31 (9%)	296	0.63532	1	0.17012	1	0.34318	1	0.29227	1	0.26896	1	0.73985	1	0.29832	1	0.14773	1	0.35738	1	0.70623	1	0.047809	1	0.042301	1	0.39132	1	0.35341	1
17p gain	18 (6%)	309	0.74878	1	0.86135	1	0.22325	1	0.26453	1	0.38373	1	0.78137	1	0.69224	1	0.35305	1	0.501	1	0.017947	1	0.077479	1	0.38689	1	0.64136	1	0.92909	1
17q gain	56 (17%)	271	0.3188	1	0.98802	1	0.76861	1	0.43679	1	0.36485	1	0.014541	1	0.87016	1	0.15771	1	0.24184	1	0.057905	1	0.025859	1	0.15046	1	0.36034	1	0.51735	1
18p gain	30 (9%)	297	0.57912	1	0.33624	1	0.44196	1	NA	NA	0.12358	1	0.8779	1	0.60539	1	0.73108	1	0.81734	1	1	1	0.0617	1	0.17129	1	0.60283	1	0.934	1
18q gain	19 (6%)	308	0.41837	1	0.22423	1	1	1	NA	NA	0.64641	1	0.77311	1	0.58666	1	0.91311	1	0.92198	1	1	1	0.6657	1	0.11547	1	0.66978	1	0.22186	1
19p gain	6 (2%)	321	0.84137	1	0.47945	1	0.69313	1	NA	NA	0.99854	1	0.64663	1	0.16912	1	0.39294	1	0.33566	1	0.3173	1	0.92151	1	0.46365	1	1	1	0.3981	1
19q gain	16 (5%)	311	0.96335	1	0.57077	1	0.30821	1	NA	NA	0.94553	1	0.10821	1	0.81312	1	0.50114	1	0.80156	1	1	1	0.82351	1	0.014391	1	0.18261	1	0.26846	1
20p gain	47 (14%)	280	0.73809	1	0.71512	1	0.63608	1	0.56077	1	0.77813	1	0.84995	1	0.43602	1	0.67454	1	0.25205	1	1	1	0.6506	1	0.73091	1	0.02988	1	0.34131	1
20q gain	59 (18%)	268	0.64857	1	0.30264	1	0.14878	1	0.14077	1	0.56359	1	0.49706	1	0.76165	1	0.48805	1	0.59983	1	0.14249	1	0.055386	1	0.52445	1	0.016757	1	0.4464	1
21q gain	29 (9%)	298	0.52726	1	0.53174	1	0.24625	1	NA	NA	0.70067	1	0.52452	1	0.53486	1	0.52175	1	0.94137	1	1	1	0.78882	1	0.050224	1	0.0066372	1	0.8003	1
22q gain	15 (5%)	312	0.22146	1	0.28414	1	0.79341	1	NA	NA	0.3122	1	0.16425	1	0.10672	1	1	1	0.48316	1	1	1	0.51173	1	0.75708	1	0.81984	1	0.40042	1
Xq gain	16 (5%)	311	0.33232	1	0.071058	1	0.4433	1	NA	NA	0.63534	1	0.18758	1	1	1	0.70406	1	0.89643	1	1	1	0.12829	1	0.99066	1	0.15247	1	0.043066	1
1p loss	26 (8%)	301	0.095248	1	0.78137	1	0.10084	1	NA	NA	0.30735	1	0.30248	1	0.87549	1	0.15969	1	0.11597	1	0.20523	1	0.1956	1	0.25991	1	0.2645	1	0.82138	1
1q loss	11 (3%)	316	3.3059e-06	0.00351	0.48267	1	0.55379	1	NA	NA	0.0083137	1	0.71114	1	0.26733	1	1	1	0.19152	1	0.14027	1	0.41732	1	0.67461	1	0.93029	1	0.93372	1
2p loss	4 (1%)	323	0.187	1	0.31274	1	1	1	NA	NA	0.81021	1	1	1	1	1	1	1	0.60214	1	1	1	0.46004	1	NA	NA	0.26696	1	NA	NA
3p loss	67 (20%)	260	0.90782	1	0.74853	1	0.89098	1	0.013447	1	0.92122	1	0.86615	1	0.33583	1	0.26325	1	0.012264	1	1	1	0.90265	1	0.89494	1	0.023659	1	0.13416	1
3q loss	39 (12%)	288	0.94107	1	0.93998	1	0.73234	1	0.016026	1	0.8386	1	0.21112	1	0.40657	1	0.78014	1	0.22381	1	1	1	0.531	1	0.58914	1	0.49391	1	0.78198	1
4p loss	29 (9%)	298	0.44966	1	0.013611	1	0.32899	1	0.6462	1	0.5479	1	0.10997	1	0.23097	1	0.6737	1	0.69621	1	0.40352	1	0.82416	1	0.036927	1	0.068145	1	0.45066	1
4q loss	34 (10%)	293	0.52242	1	0.050869	1	0.018273	1	0.88029	1	0.77733	1	0.11052	1	0.0042937	1	0.50833	1	0.036396	1	0.14137	1	0.46028	1	0.35822	1	0.040548	1	0.88025	1
5p loss	10 (3%)	317	0.94349	1	0.39482	1	0.35725	1	NA	NA	0.057623	1	0.71676	1	0.33618	1	0.57655	1	0.62479	1	1	1	0.65027	1	0.0040639	1	0.41017	1	0.48947	1
5q loss	43 (13%)	284	0.55956	1	0.058188	1	0.014226	1	0.71536	1	0.03449	1	0.89677	1	0.073707	1	0.43513	1	0.41956	1	0.49133	1	0.52813	1	0.045863	1	0.098271	1	0.40553	1
6p loss	28 (9%)	299	0.93869	1	0.069251	1	0.23395	1	NA	NA	0.27748	1	0.85506	1	0.49237	1	0.45534	1	0.60035	1	0.39673	1	0.23229	1	0.34374	1	0.35321	1	0.3982	1
6q loss	73 (22%)	254	0.61634	1	0.20147	1	0.68919	1	0.030468	1	0.4348	1	0.23777	1	0.32226	1	0.5962	1	0.39732	1	0.40857	1	0.16239	1	0.89512	1	0.61937	1	0.35928	1
7p loss	11 (3%)	316	0.8268	1	0.25496	1	1	1	NA	NA	0.27028	1	0.89167	1	0.6785	1	0.47421	1	0.54163	1	0.50611	1	0.59337	1	0.81659	1	0.30989	1	0.31314	1
7q loss	12 (4%)	315	0.70453	1	0.2074	1	0.55728	1	NA	NA	9.8938e-05	0.105	0.90162	1	1	1	1	1	0.95971	1	0.53737	1	0.19219	1	0.11555	1	0.12346	1	NA	NA
8p loss	89 (27%)	238	0.71888	1	0.79562	1	1	1	0.18927	1	0.081878	1	0.21326	1	0.93594	1	0.73073	1	0.83349	1	0.60682	1	0.35134	1	0.15918	1	0.013398	1	0.23221	1
8q loss	12 (4%)	315	0.18097	1	0.80701	1	0.38903	1	NA	NA	0.016469	1	1	1	0.91388	1	0.2672	1	0.89036	1	1	1	0.097701	1	NA	NA	0.043412	1	NA	NA
9p loss	99 (30%)	228	0.0058528	1	0.23542	1	0.14769	1	0.97519	1	0.39819	1	0.1841	1	0.0074353	1	0.90516	1	0.038049	1	1	1	0.8813	1	0.15141	1	0.085511	1	0.60303	1
9q loss	83 (25%)	244	0.29874	1	0.89001	1	0.89917	1	0.88168	1	0.38257	1	0.19607	1	0.11018	1	0.73279	1	0.22406	1	0.42568	1	0.4479	1	0.95013	1	0.028499	1	0.7412	1
10p loss	26 (8%)	301	0.30107	1	0.29591	1	0.15151	1	NA	NA	0.22544	1	0.84214	1	0.37658	1	0.79627	1	0.92873	1	0.38621	1	0.66773	1	0.78121	1	0.092424	1	0.42476	1
10q loss	28 (9%)	299	0.33636	1	0.12362	1	0.84462	1	NA	NA	1.2309e-05	0.0131	0.26376	1	0.09208	1	0.87155	1	0.13109	1	0.23748	1	0.11616	1	0.4679	1	0.2244	1	0.96074	1
11p loss	24 (7%)	303	0.49381	1	0.0040904	1	0.67375	1	NA	NA	0.61261	1	0.93992	1	0.32769	1	0.039549	1	0.06287	1	1	1	0.17612	1	0.20779	1	0.024035	1	0.011221	1
11q loss	21 (6%)	306	0.24756	1	0.66783	1	0.82507	1	0.71536	1	0.32717	1	0.76517	1	0.37668	1	0.012352	1	0.56421	1	0.37346	1	0.033418	1	0.42571	1	0.51996	1	0.24109	1
12p loss	29 (9%)	298	0.35414	1	0.81605	1	1	1	0.5414	1	0.64139	1	0.32657	1	0.88693	1	0.28889	1	0.57846	1	0.69411	1	0.7329	1	0.62676	1	0.025004	1	0.073597	1
12q loss	19 (6%)	308	0.067876	1	0.75587	1	0.63607	1	NA	NA	0.53609	1	0.34424	1	0.43786	1	0.51167	1	0.38854	1	0.61743	1	0.78775	1	0.56851	1	0.15177	1	0.29846	1
13q loss	76 (23%)	251	0.12716	1	0.28693	1	0.89593	1	0.52451	1	0.17083	1	0.59679	1	0.13761	1	0.34047	1	0.25108	1	0.78961	1	0.60564	1	0.77267	1	0.18138	1	0.18548	1
14q loss	35 (11%)	292	0.5223	1	0.43695	1	0.72136	1	0.81415	1	0.14766	1	0.52029	1	0.90414	1	0.096721	1	0.86298	1	0.46015	1	0.04888	1	0.11241	1	0.63072	1	0.34763	1
15q loss	71 (22%)	256	0.80317	1	0.07071	1	0.17983	1	0.74551	1	0.14309	1	0.97865	1	0.85621	1	0.93998	1	0.90904	1	0.77941	1	0.50074	1	0.71068	1	0.24881	1	0.65517	1
16p loss	27 (8%)	300	0.71795	1	0.1321	1	0.31436	1	NA	NA	0.53858	1	0.74337	1	1	1	0.016075	1	0.084337	1	0.22198	1	0.74833	1	0.39374	1	0.095729	1	0.64319	1
16q loss	47 (14%)	280	0.16473	1	0.19097	1	0.63608	1	0.7461	1	0.063708	1	0.59102	1	0.43184	1	0.18774	1	0.18034	1	1	1	0.81468	1	0.76582	1	0.21846	1	0.38906	1
17p loss	82 (25%)	245	0.94437	1	0.37891	1	1	1	0.10018	1	0.86467	1	0.59312	1	0.81143	1	0.6087	1	0.58114	1	0.42485	1	0.365	1	0.10673	1	0.072105	1	0.11329	1
17q loss	14 (4%)	313	0.1601	1	0.61407	1	0.587	1	NA	NA	0.57927	1	0.31399	1	0.53525	1	0.78532	1	0.58138	1	1	1	0.033331	1	0.1236	1	0.23186	1	0.11821	1
18p loss	55 (17%)	272	0.54964	1	0.036296	1	0.29883	1	0.0053138	1	0.12965	1	0.030686	1	0.32392	1	0.043737	1	0.0093219	1	0.21756	1	0.00022588	0.239	0.50765	1	0.33669	1	0.016469	1
18q loss	83 (25%)	244	0.0096933	1	0.29789	1	0.70383	1	0.4522	1	0.17259	1	0.056795	1	0.27261	1	0.29665	1	0.0054873	1	0.11835	1	0.19357	1	0.41575	1	0.2079	1	0.31171	1
19p loss	89 (27%)	238	0.044089	1	0.39212	1	0.033997	1	0.64908	1	0.72267	1	0.32152	1	0.054477	1	0.11022	1	0.20207	1	1	1	0.46444	1	0.25869	1	0.10375	1	0.41533	1
19q loss	52 (16%)	275	0.14714	1	0.34672	1	1	1	0.0045599	1	0.1005	1	0.43771	1	0.52377	1	0.081143	1	0.39492	1	0.53765	1	0.17341	1	0.9539	1	0.38168	1	0.29863	1
20p loss	45 (14%)	282	0.1659	1	0.66603	1	1	1	NA	NA	0.69115	1	0.17153	1	0.050004	1	0.17948	1	0.094771	1	0.74543	1	0.81409	1	0.60937	1	0.49061	1	0.051922	1
20q loss	16 (5%)	311	0.37042	1	0.39092	1	1	1	NA	NA	0.4109	1	0.93387	1	0.66109	1	0.20317	1	0.55819	1	1	1	0.63356	1	0.21293	1	0.43101	1	0.10135	1
21q loss	47 (14%)	280	0.90535	1	0.99079	1	0.039499	1	0.1158	1	0.5848	1	0.64725	1	0.60374	1	0.57385	1	0.41621	1	0.50641	1	0.16015	1	0.025028	1	0.0098844	1	0.97405	1
22q loss	71 (22%)	256	0.793	1	0.2325	1	0.22535	1	0.58951	1	0.82897	1	0.91585	1	0.85621	1	0.27333	1	0.94183	1	0.16041	1	0.35986	1	0.86981	1	0.007187	1	0.251	1
Xq loss	7 (2%)	320	0.23233	1	0.1085	1	0.25122	1	NA	NA	0.0037784	1	0.17734	1	0.72224	1	0.3582	1	0.27068	1	0.062083	1	0.8912	1	0.26881	1	0.68016	1	0.86545	1
