Clinical Features	Time to Death		AGE		PRIMARY.SITE.OF.DISEASE		KARNOFSKY.PERFORMANCE.SCORE		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	101 (18%)	451	0.15348	1	0.67187	1	0.15463	1	0.12641	1	0.24039	1	0.087667	1
1q gain	153 (28%)	399	0.24899	1	0.022874	1	0.066762	1	0.033077	1	0.22069	1	1	1
2p gain	124 (22%)	428	0.029319	1	2.5942e-07	0.000123	1	1	0.95552	1	0.96583	1	0.5346	1
2q gain	98 (18%)	454	0.10441	1	0.00053593	0.251	1	1	0.68973	1	0.6644	1	0.082852	1
3p gain	106 (19%)	446	0.42617	1	0.035555	1	0.57493	1	0.73023	1	0.81426	1	1	1
3q gain	203 (37%)	349	0.75854	1	1.3579e-06	0.000642	0.12641	1	0.6712	1	0.50359	1	0.3012	1
4p gain	30 (5%)	522	0.27196	1	0.57883	1	1	1	0.9211	1	0.78177	1	1	1
4q gain	17 (3%)	535	0.52162	1	0.084459	1	1	1	0.9211	1	0.39125	1	1	1
5p gain	139 (25%)	413	0.4026	1	0.31283	1	0.12224	1	0.79052	1	0.87124	1	1	1
5q gain	31 (6%)	521	0.3145	1	0.93901	1	0.20693	1	0.13656	1	0.87389	1	1	1
6p gain	121 (22%)	431	0.40349	1	0.0061826	1	0.62947	1	0.033715	1	0.070276	1	1	1
6q gain	61 (11%)	491	0.51501	1	0.084027	1	1	1	0.19537	1	0.013755	1	1	1
7p gain	121 (22%)	431	0.16603	1	0.0010645	0.497	1	1	0.29183	1	0.41372	1	1	1
7q gain	144 (26%)	408	0.12895	1	0.0088748	1	0.70269	1	0.27589	1	0.29736	1	0.57117	1
8p gain	86 (16%)	466	0.077519	1	0.67786	1	1	1	0.89448	1	0.4286	1	0.39896	1
8q gain	202 (37%)	350	0.17478	1	0.54725	1	0.24939	1	0.88008	1	0.2241	1	1	1
9p gain	59 (11%)	493	0.7543	1	0.7695	1	1	1	0.95	1	0.69389	1	1	1
9q gain	26 (5%)	526	0.93684	1	0.72992	1	1	1	NA	NA	0.44617	1	1	1
10p gain	131 (24%)	421	0.21596	1	3.2385e-05	0.0152	0.10892	1	0.1523	1	0.84738	1	1	1
10q gain	67 (12%)	485	0.57332	1	0.050454	1	0.40495	1	0.32041	1	0.39259	1	1	1
11p gain	41 (7%)	511	0.62202	1	0.91759	1	1	1	0.85189	1	0.1511	1	1	1
11q gain	59 (11%)	493	0.36268	1	0.29357	1	1	1	0.56601	1	0.24923	1	1	1
12p gain	201 (36%)	351	0.26036	1	3.846e-08	1.83e-05	0.1248	1	0.030182	1	0.0044237	1	1	1
12q gain	116 (21%)	436	0.1305	1	3.7738e-06	0.00177	0.61191	1	0.031174	1	0.067367	1	0.50795	1
13q gain	39 (7%)	513	0.71851	1	0.019684	1	1	1	0.47649	1	0.32279	1	0.19767	1
14q gain	33 (6%)	519	0.30235	1	0.79194	1	1	1	0.49661	1	0.53845	1	0.16913	1
15q gain	24 (4%)	528	0.86532	1	0.3558	1	1	1	NA	NA	0.032033	1	1	1
16p gain	32 (6%)	520	0.62133	1	0.52107	1	1	1	0.23207	1	0.19583	1	1	1
16q gain	16 (3%)	536	0.67245	1	0.74816	1	1	1	NA	NA	0.35892	1	1	1
17p gain	10 (2%)	542	0.16219	1	0.078893	1	1	1	0.76749	1	0.56437	1	1	1
17q gain	23 (4%)	529	0.097091	1	0.17724	1	1	1	0.61433	1	0.57519	1	1	1
18p gain	73 (13%)	479	0.19308	1	0.16635	1	1	1	0.34056	1	0.0086035	1	1	1
18q gain	41 (7%)	511	0.25523	1	0.34112	1	1	1	0.25158	1	0.071698	1	0.20703	1
19p gain	98 (18%)	454	0.30938	1	0.021232	1	1	1	0.99553	1	0.25787	1	0.4443	1
19q gain	90 (16%)	462	0.13944	1	0.014959	1	1	1	0.64903	1	0.28576	1	0.41434	1
20p gain	230 (42%)	322	0.1122	1	1.441e-06	0.00068	1	1	0.10467	1	0.1901	1	0.57366	1
20q gain	267 (48%)	285	0.078702	1	4.3773e-07	0.000207	1	1	0.22886	1	0.081383	1	0.61244	1
21q gain	67 (12%)	485	0.0056853	1	0.013819	1	0.40495	1	0.56601	1	0.86753	1	1	1
22q gain	9 (2%)	543	0.59318	1	0.29412	1	1	1	NA	NA	0.39123	1	1	1
Xq gain	33 (6%)	519	0.092719	1	0.3577	1	1	1	0.13656	1	0.9745	1	1	1
1p loss	34 (6%)	518	0.85047	1	0.41803	1	1	1	0.29569	1	0.70874	1	0.17393	1
1q loss	22 (4%)	530	0.33757	1	0.089613	1	1	1	0.21989	1	0.3609	1	0.11506	1
2p loss	26 (5%)	526	0.5871	1	0.83541	1	1	1	0.073101	1	0.47426	1	1	1
2q loss	30 (5%)	522	0.72912	1	0.46101	1	0.2008	1	0.073101	1	0.34445	1	1	1
3p loss	58 (11%)	494	0.33983	1	0.10368	1	0.35939	1	0.32052	1	0.68287	1	0.28372	1
3q loss	23 (4%)	529	0.13949	1	0.83701	1	0.15694	1	0.60692	1	0.17274	1	0.12007	1
4p loss	251 (45%)	301	0.24797	1	0.32461	1	0.16559	1	0.10638	1	0.47236	1	0.59353	1
4q loss	292 (53%)	260	0.39354	1	0.18236	1	0.75078	1	0.95178	1	0.32296	1	1	1
5p loss	82 (15%)	470	0.22205	1	0.016411	1	0.47542	1	0.22689	1	0.33196	1	1	1
5q loss	167 (30%)	385	0.57909	1	0.092287	1	0.35263	1	0.41962	1	0.27931	1	1	1
6p loss	120 (22%)	432	0.10489	1	0.0028604	1	0.62601	1	0.64693	1	0.45312	1	0.5214	1
6q loss	188 (34%)	364	0.41996	1	0.0082979	1	0.11433	1	0.3094	1	0.37367	1	1	1
7p loss	90 (16%)	462	0.092107	1	0.97714	1	0.51035	1	0.033577	1	0.26764	1	1	1
7q loss	48 (9%)	504	0.036885	1	0.24403	1	0.30575	1	0.0033924	1	0.93884	1	0.23924	1
8p loss	226 (41%)	326	0.34635	1	0.025121	1	0.14498	1	0.03879	1	0.44198	1	1	1
8q loss	61 (11%)	491	0.62484	1	0.019675	1	1	1	0.33113	1	0.017928	1	1	1
9p loss	207 (38%)	345	0.6128	1	0.037123	1	0.12963	1	0.47871	1	0.48523	1	0.55943	1
9q loss	235 (43%)	317	0.49242	1	3.2803e-06	0.00155	0.15233	1	0.77928	1	0.24503	1	0.57784	1
10p loss	62 (11%)	490	0.76808	1	0.119	1	1	1	0.75299	1	0.91534	1	0.30101	1
10q loss	87 (16%)	465	0.75691	1	0.23595	1	1	1	0.72035	1	0.46008	1	0.0038017	1
11p loss	140 (25%)	412	0.63545	1	0.035768	1	1	1	0.74134	1	0.45836	1	1	1
11q loss	105 (19%)	447	0.91234	1	0.13645	1	0.5711	1	0.24298	1	0.3558	1	0.46967	1
12p loss	49 (9%)	503	0.8005	1	0.11513	1	1	1	0.11311	1	0.022329	1	1	1
12q loss	72 (13%)	480	0.30375	1	0.42899	1	1	1	0.69493	1	0.0058386	1	1	1
13q loss	251 (45%)	301	0.32639	1	0.86512	1	0.45804	1	0.68273	1	0.16699	1	1	1
14q loss	160 (29%)	392	0.39199	1	0.10542	1	1	1	0.70599	1	0.042429	1	0.5602	1
15q loss	214 (39%)	338	0.83438	1	0.046038	1	0.27753	1	0.64955	1	0.11042	1	0.56285	1
16p loss	260 (47%)	292	0.07944	1	0.99944	1	0.47173	1	0.29537	1	0.2386	1	0.6038	1
16q loss	346 (63%)	206	0.20796	1	0.0029662	1	0.78044	1	0.053564	1	0.37163	1	1	1
17p loss	415 (75%)	137	0.98807	1	0.014315	1	0.25827	1	0.88342	1	0.14861	1	0.57582	1
17q loss	319 (58%)	233	0.38622	1	0.052739	1	1	1	0.054666	1	0.67196	1	0.26688	1
18p loss	178 (32%)	374	0.51375	1	0.77183	1	0.79036	1	0.75229	1	0.10718	1	0.24446	1
18q loss	225 (41%)	327	0.54043	1	0.90603	1	0.76599	1	0.65021	1	0.39456	1	0.56985	1
19p loss	138 (25%)	414	0.94068	1	0.081954	1	0.68474	1	0.48502	1	0.51296	1	1	1
19q loss	138 (25%)	414	0.69859	1	0.61301	1	0.68474	1	0.40704	1	0.66239	1	0.57685	1
20p loss	36 (7%)	516	0.030658	1	0.2031	1	1	1	0.0033924	1	0.80574	1	0.18348	1
20q loss	21 (4%)	531	0.040559	1	0.78572	1	1	1	0.0033924	1	0.63189	1	1	1
21q loss	145 (26%)	407	0.6797	1	0.92135	1	1	1	0.50848	1	0.51946	1	1	1
22q loss	376 (68%)	176	0.24605	1	0.21135	1	0.38158	1	0.95388	1	0.17623	1	0.55496	1
Xq loss	101 (18%)	451	0.22841	1	0.75204	1	0.55548	1	0.48502	1	0.87911	1	1	1