Clinical Features Time to Death AGE HISTOLOGICAL.TYPE RADIATIONS.RADIATION.REGIMENINDICATION nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 16 (4%) 427 0.038641 1 0.11067 1 0.083227 1 0.41231 1 1q gain 128 (29%) 315 0.56366 1 0.068889 1 0.014305 1 0.56886 1 2p gain 46 (10%) 397 0.09118 1 0.027978 1 0.20833 1 0.61265 1 2q gain 36 (8%) 407 0.10235 1 0.15828 1 0.17236 1 0.57262 1 3p gain 24 (5%) 419 0.49072 1 0.40265 1 0.72147 1 0.066079 1 3q gain 43 (10%) 400 0.048532 1 0.15552 1 0.0021679 0.561 0.60079 1 4p gain 5 (1%) 438 0.60032 1 0.02401 1 0.034453 1 0.63888 1 5p gain 29 (7%) 414 3.3048e-05 0.00955 0.09778 1 2.2146e-06 0.000656 0.53664 1 5q gain 8 (2%) 435 0.32885 1 0.93529 1 0.074633 1 1 1 6p gain 33 (7%) 410 0.69053 1 0.39152 1 0.035567 1 1 1 6q gain 28 (6%) 415 0.97816 1 0.39957 1 0.081335 1 0.52513 1 7p gain 39 (9%) 404 0.30315 1 0.62503 1 0.17009 1 0.10019 1 7q gain 37 (8%) 406 0.015998 1 0.6917 1 0.41388 1 0.13754 1 8p gain 78 (18%) 365 0.0011391 0.3 0.44408 1 0.41787 1 0.58687 1 8q gain 102 (23%) 341 0.0063907 1 0.95998 1 0.054487 1 0.71388 1 9p gain 11 (2%) 432 0.77561 1 0.79043 1 0.92263 1 0.039006 1 9q gain 3 (1%) 440 0.79557 1 0.78824 1 0.2689 1 0.55738 1 10p gain 82 (19%) 361 0.68102 1 0.49107 1 0.22429 1 0.89479 1 10q gain 77 (17%) 366 0.86957 1 0.657 1 0.23928 1 1 1 11p gain 5 (1%) 438 0.44404 1 0.64233 1 0.38211 1 0.63888 1 11q gain 6 (1%) 437 0.56296 1 0.69725 1 0.96474 1 1 1 12p gain 33 (7%) 410 0.58055 1 0.66659 1 0.042713 1 0.84448 1 12q gain 26 (6%) 417 0.72448 1 0.49576 1 0.8466 1 1 1 13q gain 19 (4%) 424 0.44945 1 0.00075814 0.203 5.6806e-05 0.0162 0.60914 1 14q gain 16 (4%) 427 0.19788 1 0.62079 1 0.19981 1 0.0477 1 15q gain 5 (1%) 438 0.010649 1 0.51034 1 0.99811 1 0.32834 1 16p gain 11 (2%) 432 0.31498 1 0.12259 1 0.090313 1 0.51749 1 16q gain 4 (1%) 439 0.66412 1 0.47603 1 0.99816 1 0.32132 1 17p gain 6 (1%) 437 0.00060885 0.165 0.78018 1 0.96474 1 0.37076 1 17q gain 10 (2%) 433 0.081239 1 0.15973 1 0.93795 1 0.49603 1 18p gain 31 (7%) 412 0.088695 1 0.00015693 0.0438 5.4733e-07 0.000164 0.68777 1 18q gain 15 (3%) 428 0.0036322 0.93 0.042467 1 0.1265 1 0.5685 1 19p gain 25 (6%) 418 0.052275 1 4.4687e-05 0.0128 0.00099723 0.265 0.1757 1 19q gain 22 (5%) 421 0.0079105 1 1.0586e-05 0.00308 2.7096e-07 8.18e-05 0.81533 1 20p gain 52 (12%) 391 0.012549 1 0.0049757 1 5.0442e-06 0.00148 0.015141 1 20q gain 60 (14%) 383 0.062917 1 0.0027708 0.712 3.9697e-10 1.22e-07 0.015199 1 21q gain 20 (5%) 423 0.84067 1 0.0081944 1 0.0020043 0.521 1 1 22q gain 6 (1%) 437 0.51886 1 0.017854 1 0.11702 1 1 1 Xq gain 7 (2%) 436 0.084176 1 0.33768 1 0.24949 1 1 1 1p loss 11 (2%) 432 0.27209 1 0.25523 1 0.14608 1 0.31794 1 1q loss 4 (1%) 439 0.013537 1 0.18044 1 0.22067 1 0.32132 1 2p loss 6 (1%) 437 0.52828 1 0.069646 1 0.11134 1 0.18501 1 2q loss 7 (2%) 436 0.35323 1 0.029785 1 0.16517 1 0.10835 1 3p loss 26 (6%) 417 0.12266 1 0.017136 1 0.0014641 0.384 0.82789 1 3q loss 12 (3%) 431 0.23653 1 0.14305 1 0.15452 1 0.52352 1 4p loss 48 (11%) 395 0.05093 1 0.0010426 0.276 8.2334e-11 2.56e-08 0.31763 1 4q loss 45 (10%) 398 0.032903 1 0.006035 1 4.4188e-07 0.000133 0.060878 1 5p loss 20 (5%) 423 0.44192 1 0.75767 1 7.0235e-05 0.0199 0.62249 1 5q loss 35 (8%) 408 0.93167 1 0.01871 1 4.4533e-10 1.37e-07 0.34142 1 6p loss 7 (2%) 436 0.20721 1 0.16738 1 0.24949 1 0.43342 1 6q loss 9 (2%) 434 0.66593 1 0.17848 1 0.15355 1 0.46205 1 7p loss 25 (6%) 418 0.37014 1 0.0099799 1 0.00112 0.296 1 1 7q loss 23 (5%) 420 0.82941 1 0.00087278 0.233 3.2707e-08 9.98e-06 1 1 8p loss 41 (9%) 402 0.52433 1 7.7075e-05 0.0217 7.2143e-19 2.27e-16 0.59227 1 8q loss 7 (2%) 436 0.70107 1 0.60205 1 9.2524e-06 0.0027 0.67993 1 9p loss 64 (14%) 379 0.8376 1 1.0681e-06 0.000319 4.1058e-14 1.29e-11 1 1 9q loss 81 (18%) 362 0.18068 1 1.2256e-10 3.8e-08 1.0772e-11 3.36e-09 0.42239 1 10p loss 17 (4%) 426 0.018275 1 0.062922 1 0.0044738 1 1 1 10q loss 16 (4%) 427 0.37114 1 0.029866 1 0.2396 1 0.78614 1 11p loss 46 (10%) 397 0.0005491 0.149 0.00021683 0.0601 1.0985e-06 0.000327 0.39798 1 11q loss 39 (9%) 404 0.00024443 0.0675 0.00010901 0.0305 1.8694e-05 0.00542 0.20329 1 12p loss 18 (4%) 425 0.18602 1 0.00152 0.397 0.00030264 0.0832 0.60328 1 12q loss 12 (3%) 431 0.45156 1 0.024708 1 0.016916 1 1 1 13q loss 51 (12%) 392 0.093609 1 0.0026923 0.695 0.00064088 0.173 0.51827 1 14q loss 36 (8%) 407 0.24122 1 0.00046932 0.129 6.9943e-09 2.14e-06 1 1 15q loss 63 (14%) 380 0.68189 1 3.8663e-05 0.0111 3.4181e-10 1.06e-07 0.29924 1 16p loss 56 (13%) 387 0.029084 1 5.7626e-05 0.0164 6.5595e-08 1.99e-05 0.64169 1 16q loss 92 (21%) 351 0.032988 1 4.549e-06 0.00134 6.9179e-14 2.17e-11 0.25297 1 17p loss 86 (19%) 357 0.17346 1 1.2317e-06 0.000366 2.2465e-20 7.1e-18 0.36009 1 17q loss 57 (13%) 386 0.99309 1 0.00053567 0.146 3.7234e-05 0.0107 0.12378 1 18p loss 28 (6%) 415 0.23436 1 0.1329 1 0.0057263 1 0.67218 1 18q loss 41 (9%) 402 0.52139 1 0.046356 1 0.00010138 0.0285 0.28516 1 19p loss 28 (6%) 415 0.31598 1 0.98529 1 5.4847e-06 0.00161 1 1 19q loss 21 (5%) 422 0.52897 1 0.78899 1 0.010237 1 0.80788 1 20p loss 13 (3%) 430 0.63894 1 0.077822 1 0.19575 1 0.22329 1 20q loss 6 (1%) 437 0.47629 1 0.23398 1 0.034828 1 0.37076 1 21q loss 25 (6%) 418 0.2273 1 0.34422 1 0.00069957 0.188 0.26752 1 22q loss 73 (16%) 370 0.0082873 1 0.00017798 0.0495 4.8902e-08 1.49e-05 0.32847 1 Xq loss 12 (3%) 431 0.51571 1 0.29283 1 0.11697 1 0.11854 1