Broad GDAC Analyses Status
analyses__2013_01_16__kich Run for Tumor Type: KICH

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
KICH660660650650000

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Clusters00010
2TP-Aggregate_Gene_Status00010
3TP-CoMut2.010000
4TP-CopyNumber_Clustering_CNMF00010
5TP-CopyNumber_GeneBySample00010
6TP-CopyNumber_Gistic200010
7TP-CopyNumber_Gistic2_Postprocess_Focal00010
8TP-Correlate_Clinical_vs_CopyNumber_Arm10000
9TP-Correlate_Clinical_vs_CopyNumber_Focal10000
10TP-Correlate_Clinical_vs_Methylation10000
11TP-Correlate_Clinical_vs_miR10000
12TP-Correlate_Clinical_vs_miRseq10000
13TP-Correlate_Clinical_vs_Molecular_Signatures10000
14TP-Correlate_Clinical_vs_mRNA10000
15TP-Correlate_Clinical_vs_mRNAseq10000
16TP-Correlate_Clinical_vs_Mutation10000
17TP-Correlate_Clinical_vs_RPPA10000
18TP-Correlate_CopyNumber_vs_miR10000
19TP-Correlate_CopyNumber_vs_mRNA10000
20TP-Correlate_CopyNumber_vs_mRNAseq00010
21TP-Correlate_Methylation_vs_mRNA00010
22TP-GenerateStickFigures2.010000
23TP-GenerateStickFiguresS2N10000
24TP-Hotnet10000
25TP-Hotnet_nozzleReport10000
26TP-Hotnet_preprocess10000
27TP-Methylation_Clustering_CNMF00010
28TP-Methylation_Preprocess00010
29TP-miRseq_Clustering_CNMF10000
30TP-miRseq_Clustering_Consensus10000
31TP-miRseq_Preprocess10000
32TP-miR_Clustering_CNMF10000
33TP-miR_Clustering_Consensus10000
34TP-miR_FindDirectTargets10000
35TP-miR_Preprocess10000
36TP-mRNAseq_Clustering_CNMF00010
37TP-mRNAseq_Clustering_Consensus00010
38TP-mRNA_Clustering_CNMF10000
39TP-mRNA_Clustering_Consensus10000
40TP-mRNA_Preprocess_Median10000
41TP-Mutation_Assessor10000
42TP-MutSigNozzleReport2.010000
43TP-MutSigNozzleReportS2N10000
44TP-MutSigPreprocess2.010000
45TP-MutSigRun2.010000
46TP-MutSigRunS2N10000
47TP-Paradigm10000
48TP-ParadigmPrepare10000
49TP-ParadigmPrepareWithCopyNumber10000
50TP-ParadigmPrepareWithRNASeq00010
51TP-ParadigmPrepareWithRNASeqAndCopyNumber00010
52TP-ParadigmPreprocess10000
53TP-ParadigmPreprocessExpression10000
54TP-ParadigmPreprocessRNASeq00010
55TP-ParadigmPreprocessWithCopyNumber10000
56TP-ParadigmPreprocessWithRNASeq00010
57TP-ParadigmPreprocessWithRNASeqAndCopyNumber00010
58TP-ParadigmReport10000
59TP-ParadigmReportPreprocess10000
60TP-ParadigmReportPreprocessWithCopyNumber10000
61TP-ParadigmReportPreprocessWithRNASeq00010
62TP-ParadigmReportPreprocessWithRNASeqAndCopyNumber00010
63TP-ParadigmReportWithCopyNumber10000
64TP-ParadigmReportWithRNASeq00010
65TP-ParadigmReportWithRNASeqAndCopyNumber00010
66TP-ParadigmWithCopyNumber10000
67TP-ParadigmWithRNASeq00010
68TP-ParadigmWithRNASeqAndCopyNumber00010
69TP-Pathway_FindEnrichedGenes10000
70TP-ProcessCoverageForMutSig2.010000
71TP-RPPA_Clustering_CNMF10000
72TP-RPPA_Clustering_Consensus10000
Total4900230

This table generated on Tue Feb 12 11:59:40 2013