| Pipeline | NotRunnable | Runnable | InProcess | Successful | Unsuccessful |
|---|
| 1 | TB-Aggregate_Clusters | 0 | 0 | 0 | 1 | 0 |
| 2 | TB-Aggregate_Gene_Status | 0 | 0 | 0 | 1 | 0 |
| 3 | TB-CoMut2.0 | 0 | 0 | 0 | 1 | 0 |
| 4 | TB-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 5 | TB-CopyNumber_GeneBySample | 1 | 0 | 0 | 0 | 0 |
| 6 | TB-CopyNumber_Gistic2 | 1 | 0 | 0 | 0 | 0 |
| 7 | TB-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 8 | TB-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 9 | TB-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 10 | TB-Correlate_Clinical_vs_Methylation | 0 | 0 | 0 | 1 | 0 |
| 11 | TB-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 12 | TB-Correlate_Clinical_vs_miRseq | 0 | 0 | 0 | 1 | 0 |
| 13 | TB-Correlate_Clinical_vs_Molecular_Signatures | 0 | 0 | 0 | 1 | 0 |
| 14 | TB-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 15 | TB-Correlate_Clinical_vs_mRNAseq | 0 | 0 | 0 | 1 | 0 |
| 16 | TB-Correlate_Clinical_vs_Mutation | 0 | 0 | 0 | 1 | 0 |
| 17 | TB-Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
| 18 | TB-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 19 | TB-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 20 | TB-Correlate_CopyNumber_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 21 | TB-Correlate_Methylation_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 22 | TB-GenerateStickFigures2.0 | 0 | 0 | 0 | 1 | 0 |
| 23 | TB-GenerateStickFiguresS2N | 0 | 0 | 0 | 1 | 0 |
| 24 | TB-Hotnet | 1 | 0 | 0 | 0 | 0 |
| 25 | TB-Hotnet_nozzleReport | 1 | 0 | 0 | 0 | 0 |
| 26 | TB-Hotnet_preprocess | 1 | 0 | 0 | 0 | 0 |
| 27 | TB-Methylation_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 28 | TB-Methylation_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 29 | TB-miRseq_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 30 | TB-miRseq_Clustering_Consensus | 0 | 0 | 0 | 1 | 0 |
| 31 | TB-miRseq_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 32 | TB-miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 33 | TB-miR_Clustering_Consensus | 1 | 0 | 0 | 0 | 0 |
| 34 | TB-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 35 | TB-miR_Preprocess | 1 | 0 | 0 | 0 | 0 |
| 36 | TB-mRNAseq_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 37 | TB-mRNAseq_Clustering_Consensus | 0 | 0 | 0 | 1 | 0 |
| 38 | TB-mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 39 | TB-mRNA_Clustering_Consensus | 1 | 0 | 0 | 0 | 0 |
| 40 | TB-mRNA_Preprocess_Median | 1 | 0 | 0 | 0 | 0 |
| 41 | TB-Mutation_Assessor | 0 | 0 | 0 | 1 | 0 |
| 42 | TB-MutSigNozzleReport2.0 | 0 | 0 | 0 | 1 | 0 |
| 43 | TB-MutSigNozzleReportS2N | 0 | 0 | 0 | 1 | 0 |
| 44 | TB-MutSigPreprocess2.0 | 0 | 0 | 0 | 1 | 0 |
| 45 | TB-MutSigRun2.0 | 0 | 0 | 0 | 1 | 0 |
| 46 | TB-MutSigRunS2N | 0 | 0 | 0 | 1 | 0 |
| 47 | TB-Paradigm | 1 | 0 | 0 | 0 | 0 |
| 48 | TB-ParadigmPrepare | 1 | 0 | 0 | 0 | 0 |
| 49 | TB-ParadigmPrepareWithCopyNumber | 1 | 0 | 0 | 0 | 0 |
| 50 | TB-ParadigmPrepareWithRNASeq | 0 | 0 | 0 | 1 | 0 |
| 51 | TB-ParadigmPrepareWithRNASeqAndCopyNumber | 1 | 0 | 0 | 0 | 0 |
| 52 | TB-ParadigmPreprocess | 1 | 0 | 0 | 0 | 0 |
| 53 | TB-ParadigmPreprocessExpression | 1 | 0 | 0 | 0 | 0 |
| 54 | TB-ParadigmPreprocessRNASeq | 0 | 0 | 0 | 1 | 0 |
| 55 | TB-ParadigmPreprocessWithCopyNumber | 1 | 0 | 0 | 0 | 0 |
| 56 | TB-ParadigmPreprocessWithRNASeq | 0 | 0 | 0 | 1 | 0 |
| 57 | TB-ParadigmPreprocessWithRNASeqAndCopyNumber | 1 | 0 | 0 | 0 | 0 |
| 58 | TB-ParadigmReport | 1 | 0 | 0 | 0 | 0 |
| 59 | TB-ParadigmReportPreprocess | 1 | 0 | 0 | 0 | 0 |
| 60 | TB-ParadigmReportPreprocessWithCopyNumber | 1 | 0 | 0 | 0 | 0 |
| 61 | TB-ParadigmReportPreprocessWithRNASeq | 0 | 0 | 0 | 1 | 0 |
| 62 | TB-ParadigmReportPreprocessWithRNASeqAndCopyNumber | 1 | 0 | 0 | 0 | 0 |
| 63 | TB-ParadigmReportWithCopyNumber | 1 | 0 | 0 | 0 | 0 |
| 64 | TB-ParadigmReportWithRNASeq | 0 | 0 | 0 | 1 | 0 |
| 65 | TB-ParadigmReportWithRNASeqAndCopyNumber | 1 | 0 | 0 | 0 | 0 |
| 66 | TB-ParadigmWithCopyNumber | 1 | 0 | 0 | 0 | 0 |
| 67 | TB-ParadigmWithRNASeq | 0 | 0 | 0 | 1 | 0 |
| 68 | TB-ParadigmWithRNASeqAndCopyNumber | 1 | 0 | 0 | 0 | 0 |
| 69 | TB-Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
| 70 | TB-ProcessCoverageForMutSig2.0 | 0 | 0 | 0 | 1 | 0 |
| 71 | TB-RPPA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 72 | TB-RPPA_Clustering_Consensus | 1 | 0 | 0 | 0 | 0 |
| Total | 41 | 0 | 0 | 31 | 0 |