Broad GDAC Analyses Status
analyses__2013_01_16__lihc Run for Tumor Type: LIHC
Tumor
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNAseq
miR
miRseq
RPPA
MAF
LIHC
99
62
97
0
98
0
17
0
96
0
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
TP-Aggregate_Clusters
0
0
0
1
0
2
TP-Aggregate_Gene_Status
0
0
0
1
0
3
TP-CoMut2.0
1
0
0
0
0
4
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
5
TP-CopyNumber_GeneBySample
0
0
0
1
0
6
TP-CopyNumber_Gistic2
0
0
0
1
0
7
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
8
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
9
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
10
TP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
11
TP-Correlate_Clinical_vs_miR
1
0
0
0
0
12
TP-Correlate_Clinical_vs_miRseq
0
0
0
1
0
13
TP-Correlate_Clinical_vs_Molecular_Signatures
0
0
0
1
0
14
TP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
15
TP-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
16
TP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
17
TP-Correlate_Clinical_vs_RPPA
1
0
0
0
0
18
TP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
19
TP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
20
TP-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
21
TP-Correlate_Methylation_vs_mRNA
1
0
0
0
0
22
TP-GenerateStickFigures2.0
1
0
0
0
0
23
TP-GenerateStickFiguresS2N
1
0
0
0
0
24
TP-Hotnet
1
0
0
0
0
25
TP-Hotnet_nozzleReport
1
0
0
0
0
26
TP-Hotnet_preprocess
1
0
0
0
0
27
TP-Methylation_Clustering_CNMF
0
0
0
1
0
28
TP-Methylation_Preprocess
0
0
0
1
0
29
TP-miRseq_Clustering_CNMF
0
0
0
1
0
30
TP-miRseq_Clustering_Consensus
0
0
0
1
0
31
TP-miRseq_Preprocess
0
0
0
1
0
32
TP-miR_Clustering_CNMF
1
0
0
0
0
33
TP-miR_Clustering_Consensus
1
0
0
0
0
34
TP-miR_FindDirectTargets
1
0
0
0
0
35
TP-miR_Preprocess
1
0
0
0
0
36
TP-mRNAseq_Clustering_CNMF
1
0
0
0
0
37
TP-mRNAseq_Clustering_Consensus
1
0
0
0
0
38
TP-mRNA_Clustering_CNMF
1
0
0
0
0
39
TP-mRNA_Clustering_Consensus
1
0
0
0
0
40
TP-mRNA_Preprocess_Median
1
0
0
0
0
41
TP-Mutation_Assessor
1
0
0
0
0
42
TP-MutSigNozzleReport2.0
1
0
0
0
0
43
TP-MutSigNozzleReportS2N
1
0
0
0
0
44
TP-MutSigPreprocess2.0
1
0
0
0
0
45
TP-MutSigRun2.0
1
0
0
0
0
46
TP-MutSigRunS2N
1
0
0
0
0
47
TP-Paradigm
1
0
0
0
0
48
TP-ParadigmPrepare
1
0
0
0
0
49
TP-ParadigmPrepareWithCopyNumber
1
0
0
0
0
50
TP-ParadigmPrepareWithRNASeq
1
0
0
0
0
51
TP-ParadigmPrepareWithRNASeqAndCopyNumber
1
0
0
0
0
52
TP-ParadigmPreprocess
1
0
0
0
0
53
TP-ParadigmPreprocessExpression
1
0
0
0
0
54
TP-ParadigmPreprocessRNASeq
1
0
0
0
0
55
TP-ParadigmPreprocessWithCopyNumber
1
0
0
0
0
56
TP-ParadigmPreprocessWithRNASeq
1
0
0
0
0
57
TP-ParadigmPreprocessWithRNASeqAndCopyNumber
1
0
0
0
0
58
TP-ParadigmReport
1
0
0
0
0
59
TP-ParadigmReportPreprocess
1
0
0
0
0
60
TP-ParadigmReportPreprocessWithCopyNumber
1
0
0
0
0
61
TP-ParadigmReportPreprocessWithRNASeq
1
0
0
0
0
62
TP-ParadigmReportPreprocessWithRNASeqAndCopyNumber
1
0
0
0
0
63
TP-ParadigmReportWithCopyNumber
1
0
0
0
0
64
TP-ParadigmReportWithRNASeq
1
0
0
0
0
65
TP-ParadigmReportWithRNASeqAndCopyNumber
1
0
0
0
0
66
TP-ParadigmWithCopyNumber
1
0
0
0
0
67
TP-ParadigmWithRNASeq
1
0
0
0
0
68
TP-ParadigmWithRNASeqAndCopyNumber
1
0
0
0
0
69
TP-Pathway_FindEnrichedGenes
1
0
0
0
0
70
TP-ProcessCoverageForMutSig2.0
1
0
0
0
0
71
TP-RPPA_Clustering_CNMF
1
0
0
0
0
72
TP-RPPA_Clustering_Consensus
1
0
0
0
0
Total
57
0
0
15
0
This table generated on Tue Feb 12 11:59:45 2013