Broad GDAC analyses__2013_01_16__skcm Run Status : SKCM

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
SKCM	288	169	273	101	253	0	265	0	240	164	253

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful
1	TM-Aggregate_Clusters	0	1
2	TM-Aggregate_Gene_Status	0	1
3	TM-CoMut2.0	0	1
4	TM-CopyNumber_Clustering_CNMF	0	1
5	TM-CopyNumber_GeneBySample	0	1
6	TM-CopyNumber_Gistic2	0	1
7	TM-CopyNumber_Gistic2_Postprocess_Focal	0	1
8	TM-Correlate_Clinical_vs_CopyNumber_Arm	0	1
9	TM-Correlate_Clinical_vs_CopyNumber_Focal	0	1
10	TM-Correlate_Clinical_vs_Methylation	0	1
11	TM-Correlate_Clinical_vs_miR	1	0
12	TM-Correlate_Clinical_vs_miRseq	0	1
13	TM-Correlate_Clinical_vs_Molecular_Signatures	0	1
14	TM-Correlate_Clinical_vs_mRNA	1	0
15	TM-Correlate_Clinical_vs_mRNAseq	0	1
16	TM-Correlate_Clinical_vs_Mutation	0	1
17	TM-Correlate_Clinical_vs_RPPA	0	1
18	TM-Correlate_CopyNumber_vs_miR	1	0
19	TM-Correlate_CopyNumber_vs_mRNA	1	0
20	TM-Correlate_CopyNumber_vs_mRNAseq	0	1
21	TM-Correlate_Methylation_vs_mRNA	0	1
22	TM-GenerateStickFigures2.0	0	1
23	TM-GenerateStickFiguresS2N	0	1
24	TM-Hotnet	0	1
25	TM-Hotnet_nozzleReport	0	1
26	TM-Hotnet_preprocess	0	1
27	TM-Methylation_Clustering_CNMF	0	1
28	TM-Methylation_Preprocess	0	1
29	TM-miRseq_Clustering_CNMF	0	1
30	TM-miRseq_Clustering_Consensus	0	1
31	TM-miRseq_Preprocess	0	1
32	TM-miR_Clustering_CNMF	1	0
33	TM-miR_Clustering_Consensus	1	0
34	TM-miR_FindDirectTargets	1	0
35	TM-miR_Preprocess	1	0
36	TM-mRNAseq_Clustering_CNMF	0	1
37	TM-mRNAseq_Clustering_Consensus	0	1
38	TM-mRNA_Clustering_CNMF	1	0
39	TM-mRNA_Clustering_Consensus	1	0
40	TM-mRNA_Preprocess_Median	1	0
41	TM-Mutation_Assessor	0	1
42	TM-MutSigNozzleReport2.0	0	1
43	TM-MutSigNozzleReportS2N	0	1
44	TM-MutSigPreprocess2.0	0	1
45	TM-MutSigRun2.0	0	1
46	TM-MutSigRunS2N	0	1
47	TM-Paradigm	1	0
48	TM-ParadigmPrepare	1	0
49	TM-ParadigmPrepareWithCopyNumber	1	0
50	TM-ParadigmPrepareWithRNASeq	0	1
51	TM-ParadigmPrepareWithRNASeqAndCopyNumber	0	1
52	TM-ParadigmPreprocess	1	0
53	TM-ParadigmPreprocessExpression	1	0
54	TM-ParadigmPreprocessRNASeq	0	1
55	TM-ParadigmPreprocessWithCopyNumber	1	0
56	TM-ParadigmPreprocessWithRNASeq	0	1
57	TM-ParadigmPreprocessWithRNASeqAndCopyNumber	0	1
58	TM-ParadigmReport	1	0
59	TM-ParadigmReportPreprocess	1	0
60	TM-ParadigmReportPreprocessWithCopyNumber	1	0
61	TM-ParadigmReportPreprocessWithRNASeq	0	1
62	TM-ParadigmReportPreprocessWithRNASeqAndCopyNumber	0	1
63	TM-ParadigmReportWithCopyNumber	1	0
64	TM-ParadigmReportWithRNASeq	0	1
65	TM-ParadigmReportWithRNASeqAndCopyNumber	0	1
66	TM-ParadigmWithCopyNumber	1	0
67	TM-ParadigmWithRNASeq	0	1
68	TM-ParadigmWithRNASeqAndCopyNumber	0	1
69	TM-Pathway_FindEnrichedGenes	1	0
70	TM-ProcessCoverageForMutSig2.0	0	1
71	TM-RPPA_Clustering_CNMF	0	1
72	TM-RPPA_Clustering_Consensus	0	1
	Total	23	49

This table generated on Tue Feb 12 11:59:52 2013

Broad GDAC Analyses Status analyses__2013_01_16__skcm Run for Tumor Type: SKCM

Broad GDAC Analyses Status
analyses__2013_01_16__skcm Run for Tumor Type: SKCM