Broad GDAC Analyses Status
analyses__2013_01_16__stad Run for Tumor Type: STAD

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
STAD308162237019404301340116

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Clusters00010
2TP-Aggregate_Gene_Status00010
3TP-CoMut2.000010
4TP-CopyNumber_Clustering_CNMF00010
5TP-CopyNumber_GeneBySample00010
6TP-CopyNumber_Gistic200010
7TP-CopyNumber_Gistic2_Postprocess_Focal00010
8TP-Correlate_Clinical_vs_CopyNumber_Arm00010
9TP-Correlate_Clinical_vs_CopyNumber_Focal00010
10TP-Correlate_Clinical_vs_Methylation10000
11TP-Correlate_Clinical_vs_miR10000
12TP-Correlate_Clinical_vs_miRseq00010
13TP-Correlate_Clinical_vs_Molecular_Signatures00010
14TP-Correlate_Clinical_vs_mRNA10000
15TP-Correlate_Clinical_vs_mRNAseq00010
16TP-Correlate_Clinical_vs_Mutation00010
17TP-Correlate_Clinical_vs_RPPA10000
18TP-Correlate_CopyNumber_vs_miR10000
19TP-Correlate_CopyNumber_vs_mRNA10000
20TP-Correlate_CopyNumber_vs_mRNAseq00010
21TP-Correlate_Methylation_vs_mRNA10000
22TP-GenerateStickFigures2.000010
23TP-GenerateStickFiguresS2N00010
24TP-Hotnet00010
25TP-Hotnet_nozzleReport00010
26TP-Hotnet_preprocess00010
27TP-Methylation_Clustering_CNMF00010
28TP-Methylation_Preprocess00010
29TP-miRseq_Clustering_CNMF00010
30TP-miRseq_Clustering_Consensus00010
31TP-miRseq_Preprocess00010
32TP-miR_Clustering_CNMF10000
33TP-miR_Clustering_Consensus10000
34TP-miR_FindDirectTargets10000
35TP-miR_Preprocess10000
36TP-mRNAseq_Clustering_CNMF00010
37TP-mRNAseq_Clustering_Consensus00010
38TP-mRNA_Clustering_CNMF10000
39TP-mRNA_Clustering_Consensus10000
40TP-mRNA_Preprocess_Median10000
41TP-Mutation_Assessor00010
42TP-MutSigNozzleReport2.000010
43TP-MutSigNozzleReportS2N00010
44TP-MutSigPreprocess2.000010
45TP-MutSigRun2.000010
46TP-MutSigRunS2N00010
47TP-Paradigm10000
48TP-ParadigmPrepare10000
49TP-ParadigmPrepareWithCopyNumber10000
50TP-ParadigmPrepareWithRNASeq00010
51TP-ParadigmPrepareWithRNASeqAndCopyNumber00010
52TP-ParadigmPreprocess10000
53TP-ParadigmPreprocessExpression10000
54TP-ParadigmPreprocessRNASeq00010
55TP-ParadigmPreprocessWithCopyNumber10000
56TP-ParadigmPreprocessWithRNASeq00010
57TP-ParadigmPreprocessWithRNASeqAndCopyNumber00010
58TP-ParadigmReport10000
59TP-ParadigmReportPreprocess10000
60TP-ParadigmReportPreprocessWithCopyNumber10000
61TP-ParadigmReportPreprocessWithRNASeq00010
62TP-ParadigmReportPreprocessWithRNASeqAndCopyNumber00010
63TP-ParadigmReportWithCopyNumber10000
64TP-ParadigmReportWithRNASeq00010
65TP-ParadigmReportWithRNASeqAndCopyNumber00010
66TP-ParadigmWithCopyNumber10000
67TP-ParadigmWithRNASeq00010
68TP-ParadigmWithRNASeqAndCopyNumber00010
69TP-Pathway_FindEnrichedGenes10000
70TP-ProcessCoverageForMutSig2.000010
71TP-RPPA_Clustering_CNMF10000
72TP-RPPA_Clustering_Consensus10000
Total2800440

This table generated on Tue Feb 12 11:59:53 2013