Broad GDAC analyses__2013_01_16__thca Run Status : THCA

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
THCA	500	218	407	94	435	0	379	0	349	224	323

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful
1	TP-Aggregate_Clusters	0	1
2	TP-Aggregate_Gene_Status	0	1
3	TP-CoMut2.0	0	1
4	TP-CopyNumber_Clustering_CNMF	0	1
5	TP-CopyNumber_GeneBySample	0	1
6	TP-CopyNumber_Gistic2	0	1
7	TP-CopyNumber_Gistic2_Postprocess_Focal	0	1
8	TP-Correlate_Clinical_vs_CopyNumber_Arm	0	1
9	TP-Correlate_Clinical_vs_CopyNumber_Focal	0	1
10	TP-Correlate_Clinical_vs_Methylation	0	1
11	TP-Correlate_Clinical_vs_miR	1	0
12	TP-Correlate_Clinical_vs_miRseq	0	1
13	TP-Correlate_Clinical_vs_Molecular_Signatures	0	1
14	TP-Correlate_Clinical_vs_mRNA	1	0
15	TP-Correlate_Clinical_vs_mRNAseq	0	1
16	TP-Correlate_Clinical_vs_Mutation	0	1
17	TP-Correlate_Clinical_vs_RPPA	0	1
18	TP-Correlate_CopyNumber_vs_miR	1	0
19	TP-Correlate_CopyNumber_vs_mRNA	1	0
20	TP-Correlate_CopyNumber_vs_mRNAseq	0	1
21	TP-Correlate_Methylation_vs_mRNA	0	1
22	TP-GenerateStickFigures2.0	0	1
23	TP-GenerateStickFiguresS2N	0	1
24	TP-Hotnet	0	1
25	TP-Hotnet_nozzleReport	0	1
26	TP-Hotnet_preprocess	0	1
27	TP-Methylation_Clustering_CNMF	0	1
28	TP-Methylation_Preprocess	0	1
29	TP-miRseq_Clustering_CNMF	0	1
30	TP-miRseq_Clustering_Consensus	0	1
31	TP-miRseq_Preprocess	0	1
32	TP-miR_Clustering_CNMF	1	0
33	TP-miR_Clustering_Consensus	1	0
34	TP-miR_FindDirectTargets	1	0
35	TP-miR_Preprocess	1	0
36	TP-mRNAseq_Clustering_CNMF	0	1
37	TP-mRNAseq_Clustering_Consensus	0	1
38	TP-mRNA_Clustering_CNMF	1	0
39	TP-mRNA_Clustering_Consensus	1	0
40	TP-mRNA_Preprocess_Median	1	0
41	TP-Mutation_Assessor	0	1
42	TP-MutSigNozzleReport2.0	0	1
43	TP-MutSigNozzleReportS2N	0	1
44	TP-MutSigPreprocess2.0	0	1
45	TP-MutSigRun2.0	0	1
46	TP-MutSigRunS2N	0	1
47	TP-Paradigm	1	0
48	TP-ParadigmPrepare	1	0
49	TP-ParadigmPrepareWithCopyNumber	1	0
50	TP-ParadigmPrepareWithRNASeq	0	1
51	TP-ParadigmPrepareWithRNASeqAndCopyNumber	0	1
52	TP-ParadigmPreprocess	1	0
53	TP-ParadigmPreprocessExpression	1	0
54	TP-ParadigmPreprocessRNASeq	0	1
55	TP-ParadigmPreprocessWithCopyNumber	1	0
56	TP-ParadigmPreprocessWithRNASeq	0	1
57	TP-ParadigmPreprocessWithRNASeqAndCopyNumber	0	1
58	TP-ParadigmReport	1	0
59	TP-ParadigmReportPreprocess	1	0
60	TP-ParadigmReportPreprocessWithCopyNumber	1	0
61	TP-ParadigmReportPreprocessWithRNASeq	0	1
62	TP-ParadigmReportPreprocessWithRNASeqAndCopyNumber	0	1
63	TP-ParadigmReportWithCopyNumber	1	0
64	TP-ParadigmReportWithRNASeq	0	1
65	TP-ParadigmReportWithRNASeqAndCopyNumber	0	1
66	TP-ParadigmWithCopyNumber	1	0
67	TP-ParadigmWithRNASeq	0	1
68	TP-ParadigmWithRNASeqAndCopyNumber	0	1
69	TP-Pathway_FindEnrichedGenes	1	0
70	TP-ProcessCoverageForMutSig2.0	0	1
71	TP-RPPA_Clustering_CNMF	0	1
72	TP-RPPA_Clustering_Consensus	0	1
	Total	23	49

This table generated on Tue Feb 12 11:59:54 2013

Broad GDAC Analyses Status analyses__2013_01_16__thca Run for Tumor Type: THCA

Broad GDAC Analyses Status
analyses__2013_01_16__thca Run for Tumor Type: THCA